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PubMed1996

Choosing plants to be grown in a Controlled Environment Life Support System (CELSS) based upon attractive vegetarian diets.

Space explorers on the Moon, Mars, or even in a space craft might grow plants in a CELSS to remove CO2 and provide O2 and food. Selection of crops to be studied has been rather arbitrary but should be based on plants that can provide a balanced and attractive, mostly vegetarian diet. Additional selection criteria include ease of growth in artificial environments and sufficient variety provided over long intervals. This article is based on a workshop convened to study vegetarian diets for use in a CELSS. Participants included nutritional scientists, practicing vegetarians, and interested employees of the Johnson Space Center. It was concluded that diets meeting the criteria could be formulated, and a list of suitable crops was compiled.

Crops, Agricultural↗
PubMedDate not supplied

Beneficial reuse and sustainability: the fate of organic compounds in land-applied waste.

Land application systems, also referred to as beneficial reuse systems, are engineered systems that have defined and permitted application areas based on site and waste characteristics to determine the land area size requirement. These terrestrial systems have orders of magnitude greater microbial capability and residence time to achieve decomposition and assimilation compared with aquatic systems. In this paper we focus on current information and information needs related to terrestrial fate pathways in land treatment systems. Attention is given to conventional organic chemicals as well as new estrogenic and pharmaceutical chemicals of commerce. Specific terrestrial fate pathways addressed include: decomposition, bound residue formation, leaching, runoff, and crop uptake. Molecular decomposition and formation of bound residues provide the basis for the design and regulation of land treatment systems. These mechanisms allow for assimilation of wastes and nondegradation of the environment and accomplish the goal of sustainable land use. Bound residues that are biologically produced are relatively immobile, degrade at rates similar to natural soil materials, and should present a significantly reduced risk to the environment as opposed to parent contaminants. With regard to leaching and runoff pathways, no comprehensive summary or mathematical model of organic chemical migration from land treatment systems has been developed. For the crop uptake pathway, a critical need exists to develop information for nonagricultural chemicals and to address full-scale performance and monitoring at more land application sites. The limited technology choices for treatment of biosolids, liquids, and other wastes implies that acceptance of some risks and occurrence of some benefits will continue to characterize land application practices that contribute directly to the goal of beneficial reuse and sustainability.

Agriculture↗
PubMed2026

Discovery and Engineering of a Rat Endogenous Retrovirus Reverse Transcriptase for Efficient Prime Editing.

CRISPR-based prime editors (PEs) install precise edits into genomic DNA without generating double-strand breaks. Their editing efficiency is highly dependent on reverse transcriptases (RTs), but efficient RT candidates remain limited. Here, we identified 19 novel active RTs by screening 558 candidates. Among them, RERV-RT, derived from Rattus norvegicus, exhibited the highest activity. Through structure-guided engineering and deep mutational scanning, we developed an optimized variant, enRERV-RT, which outperforms conventional M-MLV-RT-based PE systems by 1.20-fold in mammalian and plant cells, and by 1.88-fold at hard-to-edit loci, while enabling precise multiplex editing of functionally relevant genes. Additionally, we developed a high-throughput platform, TRAP-seq-PE, to systematically evaluate prime editor performance. Across diverse mutation types, we found that PE systems based on enRERV-RT exhibited higher editing efficiencies than those based on M-MLV-RT. Collectively, our work establishes a versatile, high-efficiency PE system, thereby facilitating advances in clinical gene therapy and precise crop breeding.

Animals↗
PubMed2006

Soil organic carbon sequestration in cotton production systems of the southeastern United States: a review.

Past agricultural management practices have contributed to the loss of soil organic carbon (SOC) and emission of greenhouse gases (e.g., carbon dioxide and nitrous oxide). Fortunately, however, conservation-oriented agricultural management systems can be, and have been, developed to sequester SOC, improve soil quality, and increase crop productivity. Our objectives were to (i) review literature related to SOC sequestration in cotton (Gossypium hirsutum L.) production systems, (ii) recommend best management practices to sequester SOC, and (iii) outline the current political scenario and future probabilities for cotton producers to benefit from SOC sequestration. From a review of 20 studies in the region, SOC increased with no tillage compared with conventional tillage by 0.48 +/- 0.56 Mg C ha(-1) yr(-1) (H(0): no change, p < 0.001). More diverse rotations of cotton with high-residue-producing crops such as corn (Zea mays L.) and small grains would sequester greater quantities of SOC than continuous cotton. No-tillage cropping with a cover crop sequestered 0.67 +/- 0.63 Mg C ha(-1) yr(-1), while that of no-tillage cropping without a cover crop sequestered 0.34 +/- 47 Mg C ha(-1) yr(-1) (mean comparison, p = 0.04). Current government incentive programs recommend agricultural practices that would contribute to SOC sequestration. Participation in the Conservation Security Program could lead to government payments of up to Dollars 20 ha(-1). Current open-market trading of C credits would appear to yield less than Dollars 3 ha(-1), although prices would greatly increase should a government policy to limit greenhouse gas emissions be mandated.

Agriculture↗
PubMed1998

World Wide Web-based system for the calculation of substituent parameters and substituent similarity searches.

Easy to use, interactive, and platform-independent WWW-based tools are ideal for development of chemical applications. By using the newly emerging Web technologies such as Java applets and sophisticated scripting, it is possible to deliver powerful molecular processing capabilities directly to the desk of synthetic organic chemists. In Novartis Crop Protection in Basel, a Web-based molecular modelling system has been in use since 1995. In this article two new modules of this system are presented: a program for interactive calculation of important hydrophobic, electronic, and steric properties of organic substituents, and a module for substituent similarity searches enabling the identification of bioisosteric functional groups. Various possible applications of calculated substituent parameters are also discussed, including automatic design of molecules with the desired properties and creation of targeted virtual combinatorial libraries.

Chemistry, Organic↗
PubMed1996

Fruit harvesting robots in Japan.

We have developed harvesting robots for tomato, petty-tomato, cucumber and grape in Japan. These robots mainly consist of manipulators, end-effectors, visual sensors and traveling devices. These mechanisms of the robot components were developed based on the physical properties of the work objects. The robots must work automatically by themselves in greenhouses or fields, since we are considering for one operator to tend several robots in the production system. The system is modeled after Japanese agriculture which is commonly seen to produce many kinds of crops in greenhouses and in many small fields intensively. Bioproduction in space is somewhat similar to the agricultural system in Japan, because few operators have to work in a small space. Employing robots for bioproduction in space is considered desirable in near future. The following is a description of the harvesting robots.

Agriculture↗
PubMedDate not supplied

Engineering crops, a deserving venture.

Plant transformation has had a deep impact on several aspects of basic and applied research. Genetic transformation has offered new opportunities compared to traditional breeding practises since it allows the integration into a host genome of specific sequences leading to a strong reduction of the casualness of gene transfer. One of the first target areas was plant protection against pests, pathogens and environmental stresses while the recent plant engineering programs are aimed at increasing food quality, in particular at increasing nutritional characteristics of food crops. Moreover, transgenic plants, tissue or cell cultures represent an attractive biological system for producing heterologous proteins since they offer economic and qualitative benefits. High yield production can be obtained and large-scale commercial production will take advantage of the existing infrastructure for crop cultivation, processing and storage. There are also qualitative benefits since protein synthesis secretion and post-translational modifications are similar in plants and animal cells. There are no human viral pathogens harboured by plants: thus, especially for pharmaceuticals, plants represent the safer production system. Plant transformation has become an essential instrument also for basic research, in particular for the functional characterisation of genes identified by sequencing of whole genomes. Large collections of insertion mutants have been obtained in the model plant Arabidopsis to provide a high level of genome saturation that means 95% chance of inactivating any gene at least once. To instil greater public confidence in modern plant biotechnology recent advances have already been made to overcome the potential risks for human health and environment.

Agriculture↗
PubMed2000

Lek mating systems: a case study in the Little Bustard Tetrax tetrax.

Leks have recently been defined as male display aggregations that females attend primarily for the purpose of mating. This is an extended version of previous definitions, as a clear-cut definition of leks is difficult to obtain. Four criteria should be verified to identify a lekking species: (i) there is no male parental investment beyond the sperm; (ii) males aggregate at specific sites for display; (iii) the only resource females find on the lek is the male, i.e. the male genes; (iv) females can select her mate(s), although the necessity of this latter condition for lekking species has been highly debated. We applied these criteria to the endangered little bustard Tetrax tetrax, a species that is claimed to show an exploded lek mating system, but for which this has never been fully investigated. We monitored a population of little bustards in western France during 2 years to investigate the two central criteria in the assessment of their mating system: male aggregation in arenas and lack of consistent resources in male territories. We analysed the spatial distribution of little bustard male territories, the individual variation in size, and the land use characteristics of male territories, with particular attention to the habitats that may be considered as defensible resources. Displaying males showed an aggregated spatial distribution over the study area during the 2 years of survey. Male territories were rather large (19+/-16 ha), but a large among-male variability in territory size was observed. Land use within the territories included mainly permanent and semi-permanent crops. The variability in land use among territories suggests also that resources found within male territories were selected according to male needs (food and display) rather than to female needs (permanent crops that are more appropriate for reproduction). The mating system of the little bustard seems to match the general (and extended) definition of leks, at least in some populations. However, limits between resource defence polygyny and extreme exploded or resource-based leks are thin and unclear, and the little bustard is a good example of how lek definitions may be difficult to apply in non clear-cut empirical situations.

Journal Article↗
PubMed2004

Mechanisms underlying plant resilience to water deficits: prospects for water-saving agriculture.

Drought is one of the greatest limitations to crop expansion outside the present-day agricultural areas. It will become increasingly important in regions of the globe where, in the past, the problem was negligible, due to the recognized changes in global climate. Today the concern is with improving cultural practices and crop genotypes for drought-prone areas; therefore, understanding the mechanisms behind drought resistance and the efficient use of water by the plants is fundamental for the achievement of those goals. In this paper, the major constraints to carbon assimilation and the metabolic regulations that play a role in plant responses to water deficits, acting in isolation or in conjunction with other stresses, is reviewed. The effects on carbon assimilation include increased resistance to diffusion by stomata and the mesophyll, as well as biochemical and photochemical adjustments. Oxidative stress is critical for crops that experience drought episodes. The role of detoxifying systems in preventing irreversible damage to photosynthetic machinery and of redox molecules as local or systemic signals is revised. Plant capacity to avoid or repair membrane damage during dehydration and rehydration processes is pivotal for the maintenance of membrane integrity, especially for those that embed functional proteins. Among such proteins are water transporters, whose role in the regulation of plant water status and transport of other metabolites is the subject of intense investigation. Long-distance chemical signalling, as an early response to drought, started to be unravelled more than a decade ago. The effects of those signals on carbon assimilation and partitioning of assimilates between reproductive and non-reproductive structures are revised and discussed in the context of novel management techniques. These applications are designed to combine increased crop water-use efficiency with sustained yield and improved quality of the products. Through an understanding of the mechanisms leading to successful adaptation to dehydration and rehydration, it has already been possible to identify key genes able to alter metabolism and increase plant tolerance to drought. An overview of the most important data on this topic, including engineering for osmotic adjustment or protection, water transporters, and C4 traits is presented in this paper. Emphasis is given to the most successful or promising cases of genetic engineering in crops, using functional or regulatory genes. as well as to promising technologies, such as the transfer of transcription factors.

Adaptation, Physiological↗
PubMed2006

Oligonucleotide-directed gene repair in wheat using a transient plasmid gene repair assay system.

Oligonucleotide-directed gene repair is a potential technique for agricultural trait modification in economically important crops. However, large variation in the repair frequencies among the scientific reports indicates that there are many factors influencing the repair process. We report here a transient assay system using GFP as a reporter for testing the efficiency of plasmid DNA repair in cultured wheat cells. This assay showed that osmotic medium supplemented with 2,4-D increased the oligo-targeting frequency, and that the repair of a point mutation was more efficient than repair of a single base deletion mutation in cultured scutellum cells of immature wheat embryos. This study provides the first evidence that oligonucleotide-directed mutagenesis is applicable to regenerable cultured wheat scutellum cells.

2,4-Dichlorophenoxyacetic Acid↗
PubMedDate not supplied

Tillage and crop residue effects on soil carbon and carbon dioxide emission in corn-soybean rotations.

Soil C change and CO2 emission due to different tillage systems need to be evaluated to encourage the adoption of conservation practices to sustain soil productivity and protect the environment. We hypothesize that soil C storage and CO2 emission respond to conservation tillage differently from conventional tillage because of their differential effects on soil properties. This study was conducted from 1998 through 2001 to evaluate tillage effects on soil C storage and CO2 emission in Clarion-Nicollet-Webster soil association in a corn [Zea mays L.]-soybean [Glycine max (L.) Merr.] rotation in Iowa. Treatments included no-tillage with and without residue, strip-tillage, deep rip, chisel plow, and moldboard plow. No-tillage with residue and strip-tillage significantly increased total soil organic C (TC) and mineral fraction C (MFC) at the 0- to 5- and 5- to 10-cm soil depths compared with chisel plow after 3 yr of tillage practices. Soil CO2 emission was lower for less intensive tillage treatments compared with moldboard plow, with the greatest differences occurring immediately after tillage operations. Cumulative soil CO2 emission was 19 to 41% lower for less intensive tillage treatments than moldboard plow, and it was 24% less for no-tillage with residue than without residue during the 480-h measurement period. Estimated soil mineralizable C pool was reduced by 22 to 66% with less intensive tillage treatments compared with moldboard plow. Adopting less intensive tillage systems such as no-tillage, strip-tillage, deep rip, and chisel plow and better crop residue cover are effective in reducing CO2 emission and thus improving soil C sequestration in a corn-soybean rotation.

Agriculture↗
PubMedDate not supplied

Relationships between phosphorus levels in soil and in runoff from corn production systems.

Phosphorus-enriched runoff from cropland can hasten eutrophication of surface waters. A soil P level exceeding crop needs due to long-term fertilizer and/or manure applications is one of several potential sources of increased P losses in runoff from agricultural systems. Field experiments were conducted at locations representative of three major soil regions in Wisconsin in corn (Zea mays L.) production systems to determine the effect of tillage, recent manure additions, soil P extraction method, and soil sampling depth (0-2, 0-5, and 0-15 cm) on the relationship between soil test P level and P concentrations in runoff. Runoff from simulated rainfall (75 mm h(-1)) was collected from 0.83-m2 areas for 1 h after rainfall initiation and analyzed for dissolved phosphorus (DP), total phosphorus (TP), and sediment. The DP fraction of the TP concentration in runoff ranged from 5 to 17% among sites with most of the variation in TP due to varying sediment concentration on the well-drained silt loam soils and to soil test P level on the poorly drained silty clay loam soil. In 213 observations across a range of soils and managements, good relationships occurred between soil test P level and DP concentration in runoff for most of the tests and sampling depths used. Recent manure additions and high levels of surface cover from corn residue sometimes masked this relationship. The slope of DP relative to soil test P level was markedly higher on the silty clay loam soil than on the silt loam soils possibly due to soil permeability-infiltration rate differences. Agronomic soil P tests were as effective as environmentally oriented soil P tests for predicting DP concentrations in runoff.

Agriculture↗
PubMed2003

Carbon dioxide effects on stomatal responses to the environment and water use by crops under field conditions.

Reductions in leaf stomatal conductance with rising atmospheric carbon dioxide concentration ([CO2]) could reduce water use by vegetation and potentially alter climate. Crop plants have among the largest reductions in stomatal conductance at elevated [CO2]. The relative reduction in stomatal conductance caused by a given increase in [CO2] is often not constant within a day nor between days, but may vary considerably with light, temperature and humidity. Species also differ in response, with a doubling of [CO2] reducing mean midday conductances by <15% in some crop species to >50% in others. Elevated [CO2] increases leaf area index throughout the growing season in some species. Simulations, and measurements in free air carbon dioxide enrichment systems both indicate that the relatively large reductions in stomatal conductance in crops would translate into reductions of <10% in evapotranspiration, partly because of increases in temperature and decreases in humidity in the air around crop leaves. The reduction in evapotranspiration in crops is similar to that in other types of vegetation which have smaller relative reductions in stomatal conductance, because of the poorer aerodynamic coupling of the canopy to the atmosphere in crops. The small decreases in evapotranspiration at elevated [CO2] may themselves be important to crop production in dry environments, but changes in climate and microclimate caused by reduced stomatal conductance could also be important to crop production.

Air↗
PubMed2005

Estimating the potato leafhopper Empoasca fabae (Homoptera: Cicadellidae) overwintering range and spring premigrant development by using geographic information system.

The potato leafhopper, Empoasca fabae (Harris), is a circular migratory pest of many crops in the United States that overwinters in the southern states. Northward migrant population arrival to the northern states occurs earlier in the north central states compared with northeastern states. Migrant leafhopper arrival to the north varies from year to year depending on factors influencing the development of spring migrants in the overwintering areas and on timing of weather systems capable of transporting the migrants northward. An estimate of the potato leafhopper minimum temperature survival, the geographic limits of the potato leafhopper overwintering range, leafhopper spring development in the overwintering areas, and the identification of the spring migration initiation northwards can help to predict the leafhopper arrival time in the northern states. In the current study, geographic information system (GIS) was used to estimate the potato leafhopper minimum temperature survival and premigrant development. The minimum winter temperature was estimated by overlaying minimum temperature isolines with potato leafhopper collection data taken during the winter, The geographic limits of the overwintering range were estimated using the minimum temperature survival to create a condition-based model by using ArcMap-GIS 8.2. The estimated overwintering range was larger and covered areas further north than previously estimated and included Missouri, Kansas, Kentucky, Virginia, and Maryland. The use of degree-day accumulation to estimate days of first adult emergence in the overwintering areas resulted in earliest adult emergence in the south central region. First adult emergence in south central and southeastern areas occurred before the detection of potato leafhoppers in the north central United States. These data suggested that the difference in population arrival between the north central states and the northeastern states was more dependent on factors affecting the migration and weather conditions encountered along the migration pathway.

Animal Migration↗
PubMed1997

Differential expression of chitinases in Vitis vinifera L. responding to systemic acquired resistance activators or fungal challenge.

The concept of systemic acquired resistance (SAR) enables a novel approach to crop protection, and particular pathogenesis-related proteins, i.e. an acidic chitinase, have been classified as markers of the SAR response. Basic class I (VCHIT1b) and a class III (VCH3) chitinase cDNAs were cloned from cultured Vitis vinifera L. cv Pinot Noir cells and used to probe the induction response of grapevine cells to salicylic acid or yeast elicitor. Furthermore, the cells were treated with the commercial SAR activators 2,6-dichloroiso-nicotinic acid or benzo(1,2,3)-thiadiazole-7-carbothioic acid S-methyl ester. Elicitor or salicylic acid induced both VCHIT1b and VCH3 transcript abundances, whereas 2,6-dichloroiso-nicotinic acid or benzo(1,2,3)-thiadiazole-7-carbothioic acid S-methyl ester enhanced exclusively the expression of VCH3. To assess the systemic sensation of chitinase expression, single leaves of Vitis vinifera L. cv Pinot Noir or Vitis rupestris plants were inoculated with Plasmopara viticola spore suspensions, and the VCH3 and VCHIT1b mRNA amounts in the infected versus the adjacent, healthy leaf were monitored. Two VCH3 mRNA maxima were observed 2 and 6 d postinoculation in the infected, susceptible V. vinifera tissue, whereas in the healthy leaf the transcript increased from low levels d 2 postinoculation to prominent levels d 6 to 8 postinoculation. The level of VCH3 mRNA increased also over 4 d in the inoculated, resistant V. rupestris tissue. However, necrotic spots rapidly limited the infection, and the VCH3 transcript was undetectable in the upper-stage, healthy leaf. The expression of VCHIT1b remained negligible under either experimental condition. Overall, the results suggest that the selective expression of VCH3 might be a reliable indicator of the SAR response in V. vinifera L.

Amino Acid Sequence↗
PubMedDate not supplied

Gas exchange in NASA's biomass production chamber: a preprototype closed human life support system.

An important aspect of environmental control in a life-support system is the monitoring and regulation of atmospheric gases (Sager et al. 1988) at concentrations required for the maintenance of all life forms. It will be necessary to know the rates of CO2 use, oxygen evolution, and water flux through evapotranspiration by a crop stand under various environmental conditions, so that appropriate designs and control systems for maintaining mass balances of those gases can be achieved for a full range of environmental regimes. Mass budgets of gases will also enable evaluation of crop health by monitoring directly the rates of gas exchange and indirectly the rate of accumulation of dry matter, based on rates of carbon dioxide use. This article focuses on the unique capabilities of the NASA biomass production chamber for monitoring and evaluating gas exchange rates, with special emphasis on results with wheat and soybean, two candidate species identified by NASA for CELSS.

Biomass↗
PubMed1999

Dissipation of propiconazole and tebuconazole in peppermint crops (Mentha piperita (Labiatae)) and their residues in distilled oils.

The broad-spectrum, systemic fungicides propiconazole (1) and tebuconazole (2) are used to control rust in peppermint (Mentha piperita L.). An analytical method, using gas chromatography combined with detection by high-resolution mass spectrometry, was developed to allow for the simultaneous monitoring of both pesticides in peppermint leaves and oil. Field trials were established to determine the rate of dissipation of tebuconazole and propiconazole in peppermint crops. Three applications of each fungicide were trialed at two rates (125 and 250 g of active ingredient (ai)/ha). At harvest, 64 days after the final application, propiconazole was detected at levels of 0.06 mg/kg and 0.09 mg/kg of dry weight, and tebuconazole was detected at 0.26 and 0.80 mg/kg dry weight, in identical trials. Rates of dissipation of propiconazole and tebuconazole were lower at a second trial site, where three applications of 125 g/ha ai for each fungicide resulted in residue levels of 0.21 mg/kg for both pesticides, detected 89 days after the last application. Propiconazole and tebuconazole were detected in the distilled oil at levels between 0.02 and 0.05 mg/kg and between 0.011 and 0.041 mg/kg, respectively. Propiconazole had a higher tendency to co-distill with the peppermint oil, with 0.7% of that present in the vegetative material ending up in the oil, compared to 0.09% of tebuconazole.

Fungicides, Industrial↗