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At least 739 records · Page 41Linked to original sources
PubMed2000

Mutagenesis and functional characterization of the glnB, glnA, and nifA genes from the photosynthetic bacterium Rhodospirillum rubrum.

Nitrogen fixation is tightly regulated in Rhodospirillum rubrum at two different levels: transcriptional regulation of nif expression and posttranslational regulation of dinitrogenase reductase by reversible ADP-ribosylation catalyzed by the DRAT-DRAG (dinitrogenase reductase ADP-ribosyltransferase-dinitrogenase reductase-activating glycohydrolase) system. We report here the characterization of glnB, glnA, and nifA mutants and studies of their relationship to the regulation of nitrogen fixation. Two mutants which affect glnB (structural gene for P(II)) were constructed. While P(II)-Y51F showed a lower nitrogenase activity than that of wild type, a P(II) deletion mutant showed very little nif expression. This effect of P(II) on nif expression is apparently the result of a requirement of P(II) for NifA activation, whose activity is regulated by NH(4)(+) in R. rubrum. The modification of glutamine synthetase (GS) in these glnB mutants appears to be similar to that seen in wild type, suggesting that a paralog of P(II) might exist in R. rubrum and regulate the modification of GS. P(II) also appears to be involved in the regulation of DRAT activity, since an altered response to NH(4)(+) was found in a mutant expressing P(II)-Y51F. The adenylylation of GS plays no significant role in nif expression or the ADP-ribosylation of dinitrogenase reductase, since a mutant expressing GS-Y398F showed normal nitrogenase activity and normal modification of dinitrogenase reductase in response to NH(4)(+) and darkness treatments.

Amino Acid Sequence↗
PubMed2006

Function of ammonium transporter A in the initiation of culmination of development in Dictyostelium discoideum.

The histidine kinase DhkC controls a phosphorelay involved in regulating the slug versus culmination choice during the multicellular developmental program of Dictyostelium discoideum. When the relay is active, slug migration is favored due to the activation of a cyclic AMP (cAMP) phosphodiesterase and the resultant lowering of the intracellular and extracellular levels of cAMP. Ammonia signaling represents one input into the DhkC phosphorelay, and previous studies indicated that the ammonium transporter C inhibits the relay in response to low ammonia levels. Evidence is presented that another member of the family of ammonium transporters, AmtA, also regulates the slug/culmination choice. Under standard conditions of development, the wild-type strain requires a transitional period of 2 to 3 h to go from fingers to culminants, with some slugs forming and migrating briefly prior to culmination. In contrast, amtA null cells, like cells that lack DhkC, possessed a transitional period of only 1 to 2 h and rarely formed slugs. Disruption of amtA in an amtC null strain overcame the slugger phenotype of that strain and restored its ability to culminate. Strains lacking AmtA were insensitive to the ability of ammonia to promote and prolong slug migration. These findings lead to the proposal that AmtA functions in ammonia sensing as an activator of the DhkC phosphorelay in response to perceived high ammonia levels.

Active Transport, Cell Nucleus↗
PubMed1987

Utilization of nitrate or nitrite as single nitrogen source by Mycobacterium avium.

Twenty L-amino acids and several inorganic compounds were tested individually, as a sole nitrogen source, for ability to support the growth of Mycobacterium avium LM1 serovar 1. Of the amino acids tested, only L-glutamine provided nutritional support comparable to that of ammonium chloride at 1 mM. With either 1 mM potassium nitrate or nitrite substituted for ammonium chloride, similar numbers of CFU were produced. M. avium cells were grown in potassium nitrate or nitrite concentrations of 0.25, 0.5, 1.0, and 2.0 mM, and the medium was assayed for remaining nitrogen compound at several times during growth. Rates of utilization were of first-order kinetics, with nitrite removed more rapidly than nitrate. The rates were approximately 10 times as rapid at 0.25 mM than at 2 mM for either nitrogen source. Nine clinical isolates that included M. avium serovars 1, 4, and 8 and Mycobacterium scrofulaceum serovar 43 were tested for rate of utilization of ammonia, nitrate, or nitrite. Ammonia and nitrite were utilized with first-order kinetics by all strains. Nitrate utilization occurred but was not at the same level for all strains. Clinical tests indicate that M. avium is negative for nitrate reductase; this is because of the rapid reduction of nitrite produced from nitrate.

Amino Acids↗
PubMed1995

An apical permeability barrier to NH3/NH4+ in isolated, perfused colonic crypts.

Fermentation of nonabsorbed nutrients in the colon generates high concentrations of NH3/NH4+ in the colonic lumen. NH3 is a small, lipophilic neutral weak base that readily permeates almost all cell membranes, whereas its conjugate weak acid NH4+ generally crosses membranes much more slowly. It is not known how colonocytes maintain intracellular pH in the unusual acid-base environment of the colon, where permeant acid-base products of fermentation exist in high concentration. To address this issue, we hand dissected and perfused single, isolated crypts from rabbit proximal colon, adapting techniques from renal-tubule microperfusion. Crypt perfusion permits control of solutions at the apical (luminal) and basolateral (serosal) surfaces of crypt cells. We assessed apical- vs. basolateral-membrane transport of NH3/NH4+ by using fluorescent dyes and digital imaging to monitor intracellular pH of microvacuolated crypt cells as well as luminal pH. We found that, although the basolateral membranes have normal NH3/NH4+ permeability properties, there is no evidence for transport of either NH3 or NH4+ across the apical borders of these crypt cells. Disaggregating luminal mucus did not increase the transport of NH3/NH4+ across the apical border. We conclude that, compared to the basolateral membrane, the apical border of crypt colonocytes has a very low permeability-area product for NH3/NH4+. This barrier may represent an important adaptation for the survival of crypt cells in the environment of the colon.

Absorption↗
PubMed1993

Ammonium metabolism and protection from urease mediated destruction in Helicobacter pylori infection.

AIM: To investigate further the intracellular ammonium metabolism of Helicobacter pylori and the mechanism of its urease mediated destruction. METHODS: The mechanism of the in vitro destruction of H pylori was investigated by incubating it in buffer solutions, at pH 6.0, containing isocitrate or alpha ketoglutarate in addition to urea concentrations which had previously been shown to destroy H pylori. RESULTS: The median (range) 5 minute survival of H pylori in 0.2 mol/l citrate buffer (pH 6.0) in the absence of urea was 88% (18-184%) and was similar to its survival in 0.2 mol/l isocitrate buffer in the absence of urea, median 88% (15-274%). In the presence of 50 mmol/l urea the survival of H pylori in the citrate buffer was reduced, 9.9% (0-146%), compared with its survival in isocitrate buffer with the same concentration of urea 37% (0-274%) (p < 0.01). A 72 hour preincubation of the organism with 10 mmol/l alpha ketoglutarate also increased the 5 minute survival of the organism in 0.2 mol/l citrate buffer containing 50 mmol/l urea to 36% (9-145%) compared with its survival in the same buffer but without preincubation with alpha ketoglutarate 0% (0-62%). CONCLUSION: The protection of H pylori from rapid destruction by the supply of compounds used in the intracellular metabolism of the ammonium shows that the urease mediated destruction of H pylori can be explained by intracellular depletion of alpha ketoglutarate as a result of over production of ammonium by uncontrolled urease activity.

Ammonia↗
PubMed2001

Analysis of trace levels of sulfonamide and tetracycline antimicrobials in groundwater and surface water using solid-phase extraction and liquid chromatography/mass spectrometry.

A method has been developed for the trace analysis of two classes of antimicrobials consisting of six sulfonamides (SAs) and five tetracyclines (TCs), which commonly are used for veterinary purposes and agricultural feed additives and are suspected to leach into ground and surface water. The method used solid-phase extraction and liquid chromatography/mass spectrometry (LC/MS) with positive ion electrospray. The unique combination of a metal chelation agent (Na2EDTA) with a macroporous copolymer resulted in quantitative recoveries by solid-phase extraction (mean recovery, 98 +/- 12%) at submicrogramper-liter concentrations. An ammonium formate/formic acid buffer with a methanol/water gradient was used to separate the antimicrobials and to optimize the signal intensity. Mass spectral fragmentation and ionization characteristics were determined for each class of compounds for unequivocal identification. For all SAs, a characteristic m/z 156 ion representing the sulfanilyl fragment was identified. TCs exhibited neutral losses of 17 amu resulting from the loss of ammonia and 35 amu from the subsequent loss of water. Unusual matrix effects were seen only for TCs in this first survey of groundwater and surface water samples from sites around the United States, requiring that TCs be quantitated using the method of standard additions.

Chemistry Techniques, Analytical↗
PubMed2002

Livestock ammonia management and particulate-related health benefits.

Agricultural operations are the largest source of ammonia emissions in the United States and contribute to the formation of ammonium nitrate and ammonium sulfate, two prevalent forms of fine particulate matter. Researchers have found an association between fine particulate matter and a variety of adverse healths effects, including premature mortality, chronic bronchitis, hospital admissions, and asthma attacks. Management practices that reduce ammonia emissions may decrease adverse health effects, resulting in significant economic benefits. We estimated the impact of a variety of emission controls, including diet optimization, alum, and incorporation of manure into the land. The results suggest that relatively modest management policies can have a significant impact on fine particulate formation in the atmosphere. Because of the heterogeneous nature of particulate matter, a key question is the importance of particulate matter size and composition. To the extent that ammonium nitrate and ammonium sulfate contribute to adverse health effects, ammonia management may have significant health implications. Our results suggestthat a 10% reduction in livestock ammonia emissions can lead to over $4 billion annually in particulate-related health benefits.

Agriculture↗
PubMed2001

Enhanced effect of in-situ generated ammonium salts aerosols on the removal of NOx from simulated flue gas.

The combined removal of sulfur dioxide (SO2, up to 3,000 ppm) and nitrogen oxides (NO and NO2, up to 1,200 ppm) has been investigated in a bench-scale pulsed-corona enhanced wet electrostatic precipitator (wESP) with the optional injection of ammonia and/or ozone. The reaction of ammonia with SO2 produces submicron aerosols under certain conditions. Experiments have shown the feasibility of combined SO2 and NOx removal from simulated flue gases by the action of these in-situ generated aerosols. The mechanisms for NOx removal include oxidation of NO to NO2 and subsequent absorption of NO2 into the water wall of the wESP. The results have shown that injecting NH3 (NH3/NOx molar ratio 1) resulted in NOx removal of approximately 13% in a simulated combustion flue gas. Injecting 200 ppm ozone (no ammonia) increased NO conversion to 35% by oxidation, but total NOx removal increased to only 17%. Without the formation of ammonium salts aerosols (e.g., without SO2 in the gas), co-injection of ammonia and ozone increased NO conversion to 60% and NOx removal to 40%. However, high NOx removals were measured in simulated flue gas that contained NH3, SO2, and ozone. The total NOx removal efficiency was 79% when the ammonium salts aerosols were formed in the presence of 2400 ppm SO2, 312 ppm O3, and 2,900 ppm NH3. The energy efficiency of collection improved by approximately 250% for SO2 removal and more than 4700% for NOx removal under these conditions. It was determined that the ammonium salts aerosols produced from the reaction of ammonia and sulfur dioxide substantially enhanced total NOx removal.

Absorption↗
PubMed2006

Acid-sensitive ionic channels in midbrain dopamine neurons are sensitive to ammonium, which may contribute to hyperammonemia damage.

Acid-sensitive ion channels (ASICs) are proton-gated and belong to the family of degenerin channels. In the mammalian nervous system, ASICs are most well known in sensory neurons, where they are involved in nociception, occurring when injury or inflammation causes acidification. ASICs also are widely expressed in the CNS, and some synaptic roles have been revealed. Because neuronal activity can produce pH changes, ASICs may respond to local acidic transients and alter the excitability of neuronal circuits more widely than is presently appreciated. Furthermore, ASICs have been found to underlie calcium transients that contribute to neuronal death. Degeneration of midbrain dopamine neurons is characteristic of advanced idiopathic Parkinson's disease. Therefore, we tested for functional ASICs in midbrain dopamine neurons of the ventral tegmental area and substantia nigra compacta. Patch-clamp electrophysiology applied to murine midbrain slices revealed abundant acid-sensitive channels. The ASICs were gated and desensitized by extracellular application of millimolar concentrations of NH(4)Cl. Although the NH(4)Cl solution contains micromolar concentrations of NH(3) at pH 7.4, our evidence indicates that NH(4)(+) gates the ASICs. The proton-gated and the ammonium-gated currents were inhibited by tarantula venom (psalmotoxin), which is specific for the ASIC1a subtype. The results show that acid-sensitive channels are expressed in midbrain dopamine neurons and suggest that ammonium sensitivity is a widely distributed ASIC characteristic in the CNS, including the hippocampus. The ammonium sensitivity suggests a role for ASIC1s in hepatic encephalopathy, cirrhosis, and other neuronal disorders that are associated with hyperammonemia.

Acid Sensing Ion Channels↗
PubMed1974

Immobilized aspartase-containing microbial cells: preparation and enzymatic properties.

The immobilization of asparatase-containing Escherichia coli was investigated by various methods, and the most active immobilized cells were obtained by entrapment in a polyacrylamide gel lattice. Other asparatase-containing bacteria were also entrapped by the same method, and the enzymatically active immobilized cells were obtained. The aspartase activity of the immobilized E. coli cells was increased nine- to tenfold by autolysis of the cells entrapped in the gel lattice. Enzymatic properties of the immobilized E. coli cells were investigated and compared with those of the intact cells. The optimal pH was 8.5 for the immobilized cells and 10.5 for the intact cells. The aspartase activities of immobilized and intact cells were not activated by Mn(2+), which can activate the immobilized and native aspartases. The heat stability of the immobilized cells was somewhat higher than that of the intact cells. Bivalent metal ions such as Mn(2+), Mg(2+), Ca(2+) protected against thermal inactivation of the aspartase activity of the immobilized and intact cells.

Acrylamides↗