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PubMed2006

Oriented wavelet transform for image compression and denoising.

In this paper, we introduce a new transform for image processing, based on wavelets and the lifting paradigm. The lifting steps of a unidimensional wavelet are applied along a local orientation defined on a quincunx sampling grid. To maximize energy compaction, the orientation minimizing the prediction error is chosen adaptively. A fine-grained multiscale analysis is provided by iterating the decomposition on the low-frequency band. In the context of image compression, the multiresolution orientation map is coded using a quad tree. The rate allocation between the orientation map and wavelet coefficients is jointly optimized in a rate-distortion sense. For image denoising, a Markov model is used to extract the orientations from the noisy image. As long as the map is sufficiently homogeneous, interesting properties of the original wavelet are preserved such as regularity and orthogonality. Perfect reconstruction is ensured by the reversibility of the lifting scheme. The mutual information between the wavelet coefficients is studied and compared to the one observed with a separable wavelet transform. The rate-distortion performance of this new transform is evaluated for image coding using state-of-the-art subband coders. Its performance in a denoising application is also assessed against the performance obtained with other transforms or denoising methods.

Algorithms↗
PubMedDate not supplied

The neuropsychology of Down syndrome: evidence for hippocampal dysfunction.

This study tested prefrontal and hippocampal functions in a sample of 28 school-aged (M = 14.7 years, SD = 2.7) individuals with Down syndrome (DS) compared with 28 (M = 4.9 years, SD = .75) typically developing children individually matched on mental age (MA). Both neuropsychological domains were tested with multiple behavioral measures. Benchmark measures of verbal and spatial function demonstrated that this DS sample was similar to others in the literature. The main finding was a significant Group x Domain interaction effect indicating differential hippocampal dysfunction in the group with DS. However, there was a moderate partial correlation (r = .54, controlling for chronological age) between hippocampal and prefrontal composite scores in the DS group, and both composites contributed unique variance to the prediction of MA and adaptive behavior in that group. In sum, these results indicate a particular weakness in hippocampal functions in DS in the context of overall cognitive dysfunction. It is interesting that these results are similar to what has been found in a mouse model of DS. Such a model will make it easier to understand the neurobiological mechanisms that lead to the development of hippocampal dysfunction in DS.

Adolescent↗
PubMed1997

Host MHC class I gene control of NK-cell specificity in the mouse.

The missing self model predicts that NK cells adapt somatically to the type as well as levels of MHC class I products expressed by their host. Transgenic and gene knock-out mice have provided conclusive evidence that MHC class I genes control specificity and tolerance of NK cells. The article describes this control and discusses the possible mechanisms behind it, starting from a genetic model to study how natural resistance to tumors is influenced by MHC class I expression in the host as well as in the target cells. Data on host gene regulation of NK-cell functional specificity as well as Ly49 receptor expression are reviewed, leading up to the central question: how does the system develop and maintain "useful" NK cells, while avoiding "harmful" and "useless" ones? The available data can be fitted within each of two mutually none-exclusive models: cellular adaptation and clonal selection. Recent studies supporting cellular adaptation bring the focus on different possibilities within this general mechanism, such as anergy, receptor calibration and, most importantly, whether the specificity of each NK cell is permanently fixed or subject to continuous regulation.

Animals↗
PubMed2005

The biochemical architecture of an ancient adaptive landscape.

Molecular evolution is moving from statistical descriptions of adaptive molecular changes toward predicting the fitness effects of mutations. Here, we characterize the fitness landscape of the six amino acids controlling coenzyme use in isopropylmalate dehydrogenase (IMDH). Although all natural IMDHs use nicotinamide adenine dinucleotide (NAD) as a coenzyme, they can be engineered to use nicotinamide adenine dinucleotide phosphate (NADP) instead. Intermediates between these two phenotypic extremes show that each amino acid contributes additively to enzyme function, with epistatic contributions confined to fitness. The genotype-phenotype-fitness map shows that NAD use is a global optimum.

3-Isopropylmalate Dehydrogenase↗
PubMed2006

Campylobacter jejuni induces maturation and cytokine production in human dendritic cells.

Campylobacter jejuni is a leading bacterial cause of human diarrheal disease in both developed and developing nations. Colonic mucosal invasion and the resulting host inflammatory responses are thought to be the key contributing factors to the dysenteric form of this disease. Dendritic cells (DCs) play an important role in both the innate and adaptive immune responses to microbial infection. In this study, the interaction between human monocyte-derived dendritic cells and C. jejuni was studied. We found that C. jejuni was readily internalized by DCs over a 2-h period. However, after a prolonged infection period (24 or 48 h) with C. jejuni, only a few viable bacteria remained intracellularly. Minimal cytotoxicity of C. jejuni to dendritic cells was observed. C. jejuni induced the maturation of dendritic cells over 24 h, as indicated by up-regulation of cell surface marker proteins CD40, CD80, and CD86. In addition, Campylobacter-infected DCs triggered activation of NF-kappaB and significantly stimulated production of interleukin-1beta (IL-1beta), IL-6, IL-8, IL-10, IL-12, gamma interferon, and tumor necrosis factor alpha (TNF-alpha) compared to uninfected DCs. Active bacterial invasion of DCs was not necessary for the induction of these cytokines, as heat-killed C. jejuni stimulated similar levels of cytokine production as live bacteria. Purified lipooligosaccharide of C. jejuni appears to be the major stimulant for the increased production of cytokines by DCs. Taken together, these data indicate that during infection, Campylobacter triggers an innate inflammatory response through increased production of IL-1beta, IL-6, IL-8, and TNF-alpha and initiates a Th1-polarized adaptive immune response as predicted from the high level of production of IL-12.

Campylobacter jejuni↗
PubMed1997

Regulation of intestinal sugar transport.

The recent surge in knowledge of cellular and molecular mechanisms of intestinal sugar transport has fueled an enormous interest in adaptive mechanisms regulating sugar transport. We first review several functional considerations that help us interpret the different patterns of adaptation for different nutrients. We then distinguish nonspecific adaptive mechanisms leading to parallel changes in transport of different nutrients from specific adaptive mechanisms only affecting the transport of a single nutrient. Nonspecific adaptive mechanisms include changes in mucosal surface area and in the ratio of transporting to nontransporting cells; specific mechanisms include changes in site density of transporters and in affinity constants. We also enumerate the patterns of regulation and describe how sugar transport is affected by changes in diet, energy budgets, and environmental salinity as well as by intestinal resection, starvation, stress, and age. We relate the various signals linking these stimuli to adaptive mechanisms and make predictions about the nature of these signals. Finally, we describe the significance of the interactions among sugar, fluid, and electrolyte transport mechanisms and of the paracellular pathway to transepithelial transport of sugars. We close by drawing attention to promising directions for future research.

Animals↗
PubMed1984

Cardiopulmonary gas transport and aging.

Pulmonary mechanics, ventilatory drive, and blood-oxygen transport are modified with age, but quantification of these changes and evaluation of their physiologic implications have been seriously limited. During acute and chronic physiologic stress, the respiratory and hemoglobin oxygen transport systems respond to facilitate tissue oxygenation. While these adaptive responses have been well documented in young adults, the level of their retention in the elderly is uncertain. Studies conducted to date have provided conflicting information. Some of this may have been the result of the limited number of subjects studied in each decade of life. Pulmonary and blood-biochemical changes occur gradually over many decades, necessitating evaluation of an appropriate population in order to establish optimal approaches for therapeutic treatment of the elderly and to develop a foundation for subsequent studies of the role of the cardiorespiratory system in the normal aging process. More studies of a longitudinal rather than cross-sectional nature are required before an adequate assessment of age-related alterations in function, capacity, or adaptative potential can be predicted.

Adolescent↗
PubMed2006

The time course of variability effects in the perception of spoken language: changes across the lifespan.

Although spoken language is communicated via a rapidly varying signal, human listeners recognize spoken words both quickly and accurately. Nonetheless, variability in speech does have implications for both the processes and representations involved in spoken language perception. Moreover, variability effects have been observed across the lifespan, ranging from infants to older adults. Many factors could potentially modulate the degree to which variability affects spoken language perception. In particular, recent findings demonstrate that variability effects follow a time course, manifesting themselves at predictable points during perceptual processing. However, time course investigations are currently limited to young adults. Therefore, the current paper explores how the time course of variability effects might differ throughout the lifespan, based on predictions derived from an adaptive resonance framework.

Adult↗
PubMed2025

Reference genome bias in light of species-specific chromosomal reorganization and translocations.

BACKGROUND: Whole-genome sequencing efforts, have during the past decade, unveiled the central role of genomic rearrangements-such as chromosomal inversions-in evolutionary processes, including local adaptation in a wide range of taxa. However, employment of reference genomes from distantly or even closely related species for mapping and the subsequent variant calling can lead to errors and/or biases in the datasets generated for downstream analyses. RESULTS: Here, we capitalize on the recently generated chromosome-anchored genome assemblies for Arctic cod (Arctogadus glacialis), polar cod (Boreogadus saida), and Atlantic cod (Gadus morhua) to evaluate the extent and consequences of reference bias on population sequencing datasets (approx. 15-20 × coverage) for both Arctic cod and polar cod. Our findings demonstrate that the choice of reference genome impacts the mapping statistics, including mapping depth and mapping quality, as well as core population genetic estimates, such as heterozygosity levels, nucleotide diversity (π), and cross-species genetic divergence (DXY). Furthermore, using a more distantly related reference genome can lead to inaccurate detection and characterization of chromosomal inversions, i.e., in terms of size (length) and location (position), due to inter-chromosomal reorganizations between species. Additionally, we observe that some of the verified species-specific inversions are split across multiple genomic regions when mapped against a heterospecific reference. CONCLUSIONS: Inaccurate identification of chromosomal rearrangements as well as biased population genetic measures could potentially lead to erroneous interpretation of species-specific genomic diversity, impede the resolution of local adaptation, and thus, impact predictions of their genomic potential to respond to climatic and other environmental perturbations.

Animals↗
PubMed2005

Flexible seasonal timing and migratory behavior: results from stonechat breeding programs.

Rigid schedules of long-distance migrants could be among candidate traits for adaptive migratory syndromes. This prediction was tested on stonechats, passerines that differ widely in migratory behavior and seasonal schedules. Stonechats in Europe are short-distance migrants and multiclutched, whereas African residents and Siberian long-distance migrants usually raise single broods. In captivity, all subspecies displayed endogenous cycles of reproductive development and molt. The subspecies differed in time afforded to life cycle stages. Under conducive aviary conditions, African stonechats were multibrooded, whereas Siberian stonechats did not add clutches. This difference in flexibility was exclusively related to the length of breeding windows. Stonechats also differed in premigratory preparations. Postjuvenile molt started early in Siberian stonechats, but in European and African stonechats, depended strongly on hatching date. In contrast, all subspecies shortened molt duration at the same rate when hatched from late broods. Plasticity of Zugunruhe timing was identical in Siberian and European subspecies and nearly compensated for hatching late. The stonechat data suggest a refined understanding of temporal plasticity in long-distance migrants. Overall, plasticity was not reduced, but was differently organized. Apparently rigid migrant schedules were related to short breeding cycles and inflexible molt onset. Short windows for breeding and juvenile development could provide safety measures for timely departure. Once molt was initiated, temporal plasticity of long-distance migrants matched that of less migratory conspecifics. In addition to adjusting endogenous programs, stonechats differed in implementing them in the field. Modifying the conditions under which programs are expressed may be an efficient way to enhance seasonal plasticity.

Africa↗
PubMed2006

Trabecular bone in the bird knee responds with high sensitivity to changes in load orientation.

Wolff's law of trajectorial orientation proposes that trabecular struts align with the orientation of dominant compressive loads within a joint. Although widely considered in skeletal biology, Wolff's law has never been experimentally tested while controlling for ontogenetic stage, activity level, and species differences, all factors that may affect trabecular bone growth. Here we report an experimental test of Wolff's law using a within-species design in age-matched subjects experiencing physiologically normal levels of bone strain. Two age-matched groups of juvenile guinea fowl Numida meleagris ran on a treadmill set at either 0 degrees (Level group) or 20 degrees (Incline group), for 10 min per day over a 45-day treatment period. Birds running on the 20 degrees inclined treadmill used more-flexed knees than those in the Level group at midstance (the point of peak ground reaction force). This difference in joint posture enabled us to test the sensitivity of trabecular alignment to altered load orientation in the knee. Using a new radon transform-based method for measuring trabecular orientation, our analysis shows that the fine trabecular bone in the distal femur has a high degree of correspondence between changes in joint angle and trabecular orientation. The sensitivity of this response supports the prediction that trabecular bone adapts dynamically to the orientation of peak compressive forces.

Age Factors↗
PubMed2005

The isolated working heart model in infarcted rat hearts.

Congestive heart failure (CHF) is one of the most common causes of death in western countries. The aim of this study was to establish and validate the working heart model in rat hearts with CHF. In the rat model the animals show parameters and symptoms that can be extrapolated to the clinical situation of patients with end-stage heart failure. The focus of attention was the evaluation of cardiodynamics (e.g.contractility) in the isolated 'working heart' model. The geometric properties of the left ventricle were measured by planimetry (stereology). Formulae available in the past for determining certain parameters in the working heart model (e.g.external heart work) have to be fitted to the circumstances of the infarcted rat hearts with its different organ properties.CHF was induced in Wistar Kyoto (WKY/NHsd) and spontaneously hypertensive rats (SHR/NHsd) by creating a permanent (8 week) occlusion of the left coronary artery, 2 mm distal to the origin from the aorta, by a modified technique (Itter et al. 2004). This resulted in a large infarction of the free left ventricular wall. We were able to establish and adapt a new and predictive working heart model in spontaneously hypertensive rat hearts with myocardial infarction (MI) 8-12 weeks after coronary artery ligation. At this stage the WKY rat did not show any symptoms of CHF. The SHR rat represented characteristic parameters and symptoms that could be extrapolated to the clinical situation of patients with end-stage heart failure (NYHA III-IV). Upon inspection, severe clinical symptoms of CHF such as dyspnoea, subcutaneous oedema, palebluish limbs and impaired motion were prominent. On necropsy the SHR showed lung oedema, hydrothorax, large dilated left and right ventricular chambers and hypertrophy of the septum. In the working heart model the infarcted animals showed reduced heart power, diminished contractility and enhanced heart work, much more so in the SHR/NHsd than in the Wistar Kyoto rat (WKY/NHsd). The aim for the future is to find a causal therapy of heart failure treatment. At present, only palliative therapy is possible for patients with heart failure. For this reason the working heart model in CHF rat hearts should provide a valuable method for early testing of new therapeutic approaches for patients with CHF.

Animals↗
PubMed2000

Low-level exposure to methylmercury modifies muscarinic cholinergic receptor binding characteristics in rat brain and lymphocytes: physiologic implications and new opportunities in biologic monitoring.

Methylmercury (MeHg) affects several parameters of cholinergic function. These alterations are thought to play a role in MeHg neurotoxicity. In vitro experiments have indicated that MeHg acts as a strong competitive inhibitor of radioligand binding to muscarinic cholinergic receptors (mAChRs) in rat brain. Furthermore, rat brain mAChRs share several pharmacologic characteristics of similar receptors present on lymphocytes. Using the muscarinic antagonist [(3)H]quinuclidinyl benzilate (QNB) to label receptors, we investigated the in vivo interactions of MeHg with rat brain mAChRs. We also investigated whether MeHg-induced central mAChR changes are reflected by similar alterations in splenic lymphocytes. Exposure to low doses of MeHg--0.5 or 2 mg/kg/day in drinking water--for 16 days significantly increased (20-44% of control) mAChRs density (B(max)) in the hippocampus and cerebellum without affecting receptor affinity (K(d)). The effect of MeHg did not occur immediately; it was not apparent until 2 weeks after the termination of treatment. No significant changes in [(3)H]QNB binding were observed in the cerebral cortex. In splenic lymphocytes, mAChR density was remarkably increased (95-198% of control) by day 14 of MeHg exposure and remained enhanced 14 days after the cessation of treatment. These results suggest up-regulation of mAChRs in selected brain regions (hippocampus and cerebellum) after prolonged low-level ingestion of MeHg in rats. These cerebral effects are delayed in onset and are preceded by a marked increase in density of mAChRs on lymphocytes. In chronic MeHg exposure, peripheral lymphocytes may represent a sensitive target for the interaction of MeHg with mAChRs and, therefore, may be predictive indicators of later adaptive response involving cerebral mAChRs. Additionally, the effect of MeHg on lymphocyte mAChRs in vivo indicates that this receptor system should be investigated further as a possible target for MeHg immunotoxicity.

Administration, Oral↗
PubMed1985

Postadaptation orientation discrimination.

An orientational difference of only 0.3-0.5 deg can be discriminated between two gratings or two lines, although psychophysical channels and cortical cells both have comparatively broad orientation bandwidths of 10-25 deg. One proposed explanation for the fineness of orientation discrimination is that, while detection is determined by the most excited orientation-tuned neural elements, superthreshold orientation discrimination is determined by difference signals between these elements [Westheimer et al., J. Opt. Soc. Am. 66, 332 (1976)]. This implies that, if stimulus orientation is changed slightly, the most important elements for discriminating this change will be those whose relative activity changes most, even though the excitation of these elements may be comparatively weak. In accord with this prediction, we found that adapting to a high-contrast grating degraded discrimination for test gratings inclined at about 10-20 deg to the adapting grating while having little effect on the detection of these inclined gratings. For test gratings parallel to the adapting grating, discrimination was improved, but detection was degraded. Either an opponent-process or a line-element model can account for these effects of adaptation. An opponent model can also explain our findings that subjects do not confound orientation change with contrast change and that suprathreshold orientation discrimination is almost independent of contrast, varying by only +/- 10% from about 3 to about 25 times contrast threshold. A discrimination model must incorporate reliable storage of spatial frequency, because discrimination was not affected by increasing the interval between grating presentations from 1 to 10 sec.(ABSTRACT TRUNCATED AT 250 WORDS)

Adaptation, Ocular↗
PubMed1995

Trigeminal structure-function relationships: a reevaluation based on long-range staining of a large sample of brainstem a beta fibers.

Prior studies suggest that some classes of thickly myelinated (A beta) afferents have distinct morphologies in the trigeminal (V) brainstem complex, and that single fibers have collaterals with different shapes in the four V subnuclei. However, these conclusions are based upon relatively few and incompletely stained fibers and limited statistical rigor. In the present study, 104 fibers were stained more completely with neurobiotin in rats to provide within-fiber intersubnucleus comparisons, and between-fiber intrasubnucleus comparisons, of collaterals associated with a vibrissa, guard hairs, hairy skin, glabrous skin, or oral structures. Collaterals from all functional categories had similar qualitative features and were distributed somatotopically in the transverse plane according to known maps. Fiber categories were not disproportionately represented at particular sites along the brainstem's rostrocaudal axis, although most fibers adhered to an onion-leaf topography in caudalis. Surprisingly few structure-function relationships were revealed by multivariate analysis of variance and post hoc group comparisons, as follows: Arbors were larger in caudalis than in any other subnucleus; collaterals were most numerous in interpolaris; vibrissa afferents had more collaterals than oral and guard hair afferents; and oral fibers had larger arbors than vibrissa or guard hair afferents in subnucleus oralis. Peripheral receptor association and response adaptation rate failed to predict arbor shapes and terminal bouton numbers in any V subnucleus. These data confirm that the locations of V primary afferent arbors are predicted by their receptive fields. However, collateral number and morphology are predicted only to a very limited extent by the V subnucleus and peripheral receptor affiliation--a conclusion that contrasts with those of most prior studies of somatosensory primary afferents.

Afferent Pathways↗
PubMed1999

The nonresilient hybrid removable prosthesis: treatment of choice for the atrophic maxilla.

This article presents the ments of the nonresilient hybrid removable prosthesis, which is the treatment of choice for the atrophic maxilla. The technique described may be adapted to yield a predictable outcome that provides functional and biomechanical stability that are superior to a resilient over-denture, along with a cosmetic and phonetic result that often proves superior to that of the fixed prosthesis.

Alveolar Bone Loss↗
PubMed1991

Liquid fluidized bed adsorption of protein in the presence of cells.

The adsorption, in a liquid fluidized bed, of Bovine Serum Albumin (BSA), onto an ion-exchange absorbent, Q-Sepharose Fast Flow, in the presence of Alcaligenes eutrophus cells, has been studied. The expansion of the fluidized bed is greater in the presence than in the absence of cells and obeys the laws of Richardson and Zaki. The effect of cell concentration on the equilibrium adsorption characteristics of the adsorbent has been assessed. The rate of adsorption of BSA onto the adsorbent has been studied in a batch stirred tank, and a fluidized bed system both in the presence and absence of cells. Comparisons have been made with the adsorption of human immunoglobulin G (human IgG), onto an affinity adsorbent, Protein A Sepharose CL-4B. The data from the fluidized bed breakthrough tests have been used to assess the validity of a theoretical model adapted from one that predicts the performance of the adsorption phase in the absence of cells in fixed bed systems. Tests have been done on the washing phase in the fluidized bed adsorption system to establish the most efficient method of washing cells and unadsorbed protein out of the bed.

Adsorption↗
PubMed2004

[Role of impedance measurement in nutritional screening].

Nutritional status has a prognostic value in the clinical evolution of patients who are malnourished, are becoming malnourished or are in process of being rehabilitated. The evaluation of nutritional status is based on a comprehensive approach, and includes body composition measurement by bio-impedance analysis (BIA). BIA determines the quantity of body fat-free and fat mass and has a precision around 4%. The reliability of BIA depends on the use of body composition prediction equations that are adapted to the subjects studied and on the inclusion of various anthropometric parameters (weight, height, sex, age, race, etc). BIA remains imprecise in the presence of abnormal distribution of body compartments (ascites, dialysis, lipodystrophy) or of extreme weights (cachexia, severe obesity). Multi-frequency or segmental BIA were developed to overcome hydration abnormalities and variations in body geometry. However, these techniques require further validation. This review discusses the indications and limitations of BIA.

Anthropometry↗