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PubMed1996

Clusters of DNA induced by ionizing radiation: formation of short DNA fragments. I. Theoretical modeling.

We have developed a general theoretical model for the interaction of ionizing radiation with chromatin. Chromatin is modeled as a 30-nm-diameter solenoidal fiber comprised of 20 turns of nucleosomes, 6 nucleosomes per turn. Charged-particle tracks are modeled by partitioning the energy deposition between primary track core, resulting from glancing collisions with 100 eV or less per event, and delta rays due to knock-on collisions involving energy transfers >100 eV. A Monte Carlo simulation incorporates damages due to the following molecular mechanisms: (1) ionization of water molecules leading to the formation of OH, H, eaq, etc.; (2) OH attack on sugar molecules leading to strand breaks: (3) OH attack on bases; (4) direct ionization of the sugar molecules leading to strand breaks; (5) direct ionization of the bases. Our calculations predict significant clustering of damage both locally, over regions up to 40 bp and over regions extending to several kilobase pairs. A characteristic feature of the regional damage predicted by our model is the production of short fragments of DNA associated with multiple nearby strand breaks. The shapes of the spectra of DNA fragment lengths depend on the symmetries or approximate symmetries of the chromatin structure. Such fragments have subsequently been detected experimentally and are reported in an accompanying paper (B. Rydberg, Radiat, Res. 145, 200-209, 1996) after exposure to both high- and low-LET radiation. The overall measured yields agree well quantitatively with the theoretical predictions. Our theoretical results predict the existence of a strong peak at about 85 bp, which represents the revolution period about the nucleosome. Other peaks at multiples of about 1,000 bp correspond to the periodicity of the particular solenoid model of chromatin used in these calculations. Theoretical results in combination with experimental data on fragmentation spectra may help determine the consensus or average structure of the chromatin fibers in mammalian DNA.

Chromatin↗

PubMed2000

Characterization of the atmospheric pressure ionization mass spectrometric process obtained using a fused-silica emitter with the high voltage applied upstream

The atmospheric pressure ionization process obtained when a mixture of methanol and water (90:10, v/v) also containing 50 microM sodium hydroxide is dispersed from a fused-silica emitter was studied. A combination of a high electric field and a nebulizer gas with the high voltage applied upstream in the liquid flow was utilized to facilitate the spray process. By comparing the dependences of the spray current and ion signals on the spray potential, it was found that electrical corona discharges were obtained for potentials higher than about 2.6 kV, which resulted in a mixed electrospray and chemical ionization process. By introducing vapour from a solvent, such as benzene or toluene, with a low ionization energy into the nebulizing gas, it was found that the appearance of the corresponding molecular ion was correlated with a change in the slope of the spray current-potential curve. This indicates that the breakpoints in the spray current-potential curves observed were correlated with the onsets of corona discharges. It was shown that the mixed ionization process gives rise to increased amounts of protonated solvent molecules and assists in the formation of sodiated adduct ions from an uncharged fatty acid methyl ester.

Journal Article↗

PubMed1999

Interpretation of electrospray and atmospheric pressure chemical ionization mass spectra of 10-formyl-7,8-dihydrofolic acid and 5-formyl-5,6,7,8-tetrahydropteroic acid.

Interpretation of positive- and negative-ion electrospray ionization (ESI) and atmospheric pressure chemical ionization (APCI) mass spectra of 10-formyl-7,8-dihydrofolic acid (10-FDHFA) and 5-formyl-5, 6,7,8-tetrahydropteroic acid (5-FTHPA) is discussed. ESI mass spectra enable unambiguous molecular weight (MW) determination. In addition to the determination of MW, APCI mass spectra also make possible structure elucidation of 10-FDHFA and 5-FTHPA. ESI and APCI are complementary ionization techniques and appear to be useful alternatives to conventional electron ionization (EI) for the structure elucidation of non-volatile carboxylic acids. Prior to mass spectral analysis, the acids investigated were separated by reverse-phase high-performance liquid chromatography (HPLC).

Atmospheric Pressure↗

PubMed2000

Rapid identification of Mg-chelated chlorins by on-line high performance liquid chromatography/atmospheric pressure chemical ionization mass spectrometry.

On-line high performance liquid chromatography/atmospheric pressure chemical ionization mass spectrometry (HPLC/APCI-MS) has been applied to the identification of a number of tetrapyrrolic pigments as well as several magnesium-free analogs. Mass spectra, acquired both in positive (+) and negative (-) ionization mode, allow not only the determination of the structural features of the pigments, but also a very easy differentiation of the Mg-chelated pigments from the free bases. In the positive ionization mode, all pigments show mainly a [M + H]+ ion and a [M + H - C20H38]+ fragment ion corresponding to the loss of the phytyl chain via a hydrogen rearrangement. In the negative ionization mode, on the other hand, although all pigments give an abundant molecular anion [M]-*, only the Mg-chelated chlorin spectra show a prominent fragment [M - C20H39]- produced by a formal loss of the phytyl radical.

Bacteriochlorophylls↗

PubMed2000

Derivatization for electrospray ionization-mass spectrometry. 4. Alkenes and alkynes

A survey of derivatization strategies and prospective derivatization reactions for conversion of simple alkenes and alkynes to 'electrospray-active' species is presented. General synthetic strategies are discussed and illustrative examples of prospective derivatives prepared from model compounds are presented along with their electrospray ionization (ES) mass spectra. The identified derivatives of these neutral, nonpolar analytes are either ionic or are ionizable in solution through Bronsted acid/base chemistry, by Lewis acid/base chemistry, or by chemical or electrochemical electron-transfer chemistry. Once ionized, the derivatives are expected to be amenable to detection by electrospray ionization-mass spectrometry. Derivatives are identified for positive and negative ion analysis of both alkenes and alkynes. Copyright 2000 John Wiley & Sons, Ltd.

Journal Article↗

PubMedDate not supplied

Analysis of bile acids and bile alcohols in urine by capillary column liquid chromatography-mass spectrometry using fast atom bombardment or electrospray ionization and collision-induced dissociation.

Solid-phase extraction and group separation by anion exchange chromatography were combined with capillary column liquid chromatography-mass spectrometry (LC/MS) to permit a thorough characterization of bile acids and intact conjugates of bile alcohols in human urine. Groups of compounds were separated according to acid strength and were analysed on a capillary column, 0.25 x 500 mm, packed with 5 microns particles of Chromasil C18, and connected via a fused silica capillary to the continuous-flow fast atom bombardment (CF-FAB) or electrospray (ES) sources of an AutoSpec-TOFFPD hybrid mass spectrometer. Acetonitrile:water mixtures containing 30 mM ammonium acetate pH 7.2 were used as mobile phases, with 5% glycerol added for FAB Ionisation. Bile acids were analysed directly or after derivatization of carboxyl groups with 4-aminobenzenesulphonic acid. Negative-ion spectra (m/z 1000 or 800 to 300 or 100) were recorded using the point detector or, in the case of ES ionization, the focal plane array detector (FPD). Deprotonated molecules of bile acids containing a sulphonic acid group were detected with a spectral signal to noise ratio of 5:1 when about 90 fmol were injected onto the column of the LC/CF-FAB system. The corresponding peak in the reconstructed ion chromatogram gave a signal-to-noise ratio of about 25:1. The sensitivity could be increased 20-50 times by using ES ionization and the FPD. Bile acids without a sulphonic acid group gave about 70% of the signal of sulphonic acids using ES ionization. The capillary column LC/MS systems were evaluated by analyses of urine from an infant with cholestatic liver disease. More than 150 different bile acids and bile alcohol conjugates were detected, some of which were partially characterized using collision induced dissociation (CID) of the deprotonated molecules and B/E linked scans. A number of compounds were detected for the first time, e.g. di-, tri-, and tetra-hydroxycholestanoic acids conjugated with N-acetylhexosamine and cholestenediol, cholestenetriol and cholestanetriol doubly conjugated with sulphuric acid and glucuronic acid. The relative merits of ES and FAB ionization are discussed.

Alcohols↗

PubMed2000

Dissolution of ionizable water-insoluble drugs: the combined effect of pH and surfactant.

This study reports the results of the combined effect of pH and surfactant on the dissolution of piroxicam (PX), an ionizable water-insoluble drug in physiological pH. The intrinsic dissolution rate (J(total)) of PX was measured in the pH range from 4.0 to 7.8 with 0%, 0.5%, and 2.0% sodium lauryl sulfate (SLS) using the rotating disk apparatus. Solubility (c(total)) was also measured in the same pH and SLS concentration ranges. A simple additive model including an ionization (PX <--> H(+) + PX(-)) and two micellar solubilization equilibria (PX + micelle <--> [PX](micelle), PX(-) + micelle <--> [PX(-)](micelle)) were considered in the convective diffusion reaction model. J(total) and c(total) of PX increased with increasing pH and SLS concentration in an approximately additive manner. Nonlinear regression analysis showed that observed experimental data were well described with the proposed model (r(2) = 0.86, P < 0.001 for J(total) and r(2) = 0.98, P < 0.001 for c(total)). The pK(a) value of 5.63 +/- 0.02 estimated from c(total) agreed well with the reported value. The micellar solubilization equilibrium coefficient for the unionized drug was estimated to be 348 +/- 77 L/mol, while the value for the ionized drug was nearly equal to zero. The diffusion coefficients of the species PX, PX(-), and [PX](micelle) were estimated from the experimental results as (0. 93 +/- 0.35) x 10(-5), (1.4 +/- 0.30) x 10(-5), and (0.59 +/- 0.21) x 10(-5) cm(2)/s, respectively. The total flux enhancement is less than the total solubility enhancement due to the smaller diffusion coefficients of the micellar species. This model may be useful in predicting the dissolution of an ionizable water insoluble drug as a function of pH and surfactant and for establishing in vitro-in vivo correlations, IVIVC, for maintaining bioequivalence of drug products.

Anti-Inflammatory Agents, Non-Steroidal↗

PubMed1993

Synergistic effects of ionizing radiation and 60 Hz magnetic fields.

Experiments designed to evaluate the synergistic production of clastogenic effects by ionizing radiation and 60 Hz magnetic fields were performed using human lymphocytes from peripheral blood. Following exposure to ionizing radiation, cells were cultured in 60 Hz magnetic fields having field strengths up to 1.4 mT. Cells exposed to both ionizing radiation and 60 Hz magnetic fields demonstrated an enhanced frequency of near tetraploid chromosome complements, a feature not observed following exposure to only ionizing radiation. The results are discussed in the context of a multiple-stage model of cellular transformation, employing both initiating and promoting agents.

Electromagnetic Fields↗

PubMed1978

Identification of amino sugars from bacterial lipopolysaccharides by gas chromatography electron impact and chemical ionization mass spectrometry.

Amino sugars isolated from lipopolysaccharides of Brucella suis, Brucella abortus and Neisseria gonorrhoeae colony types 1 and 4 were identified using gas chromatography electron impact and chemical ionization mass spectrometry. Lipopolysaccharides were obtained by aqueous ether or aqueous phenol extraction. Isolated lipopolysaccharides were hydrolyzed in 1% acetic acid followed by hydrolysis of the polysaccharide moiety in 2 NHCl for 6 h at 100 degrees C. Amino sugars were first isolated by elution from Dowex 50 H+ and then N-acetylated, followed by trimethylsilylation. Trimethylsilyl ethers of 2-acetamido-2-deoxysugars; N-acetylglucosamine, N-acetylmannosamine, N-acetylgalactosamine, and a 2-acetamido-2.6-dideoxysugar, N-acetylquinovosamine, were identified by their fragmentation patterns. In the electron impact mode, N-acetylglucosamine and N-acetyl-galactosamine were distinguished from one another by comparing peak intensities at m/e 233 and 305. However, N-acetylglucosamine and N-acetylmannosamine could not be differentiated by electron impact mass spectrometry. In the chemical ionization mode, N-acetylglucosamine and N-acetylmannosamine both with base peaks at m/e 494, could be distinguished from N-acetylgalactosamine and N-acetylquinovosamine by their base peaks at m/e 420 and 332, respectively. N-Acetylglucosamine and N-acetylmannosamine were differentiated from one another by comparing peak intensities at m/e 330, 404, 420, and 510 [MH]+. This is the first report of chemical ionization mass spectrometry applied to the identification of amino sugars in bacterial lipopolysaccharides and shows that some 2-amino-2-deoxysugars can be differentiated by both electron impact and chemical ionization mass spectrometry.

Amino Sugars↗

PubMed1979

Cardenolide analogues: 10--characterization of cardiac glycosides by chemical ionization mass spectrometry.

The potential of chemical ionization mass spectrometry for the characterization of naturally occurring and semi-synthetic cardiac glycosides has been investigated. Methane, isobutane and ammonia were used as reactant gases. With the exception of ouabain, the ammonia chemical ionization mass spectra of the cardiac glycosides examined in this work contained abundant [M + NH4]+ions and abundant fragment ions formed by cleavage of glycoside bonds. Ammonia chemical ionization mass spectrometry was found to provide a rapid and sensitive method for the characterization of the products of glycosidation reactions. In contrast, the methane and isobutane chemical ionization mass spectra of the cardiac glycosides, with the exception of ouabain, did not contain protonated molecular ions and did not contain abundant fragment ions above m/z 400.

Ammonia↗

PubMed1979

Chemical ionization mass spectrometry of trimethylsilylated carbohydrates and organic acids retained in uremic serum.

After appropriate sample pretreatment and derivatization, uremic serum was investigated by combined high resolution gas chromatography and mass spectrometry, using both electron impact and chemical ionization methods. Electron impact and chemical ionization spectra of a number of identified (trimethylsilylated) carbohydrates and organic acids are compared. The utilization of chemical ionization mass spectrometry, with isobutane as the reagent gas, is discussed in detail. The influence of the reagent gas pressure on the total ion current and on the spectral appearance was studied. The identification of compounds, based on electron impact mass spectral data, was confirmed and often aided appreciably by using this technique. The chemical ionization spectra of trimethylsilyated alditols and aldonic acids, as well as of other organic acids showed protonated molecular ions, whereas aldoses did not. Differences with electron impact spectra are found mainly in the high mass region. The loss of one or more trimethylsilanol groups becomes the predominating fragmentation route at higher reagent gas pressures.

Carbohydrates↗

PubMed1981

Electron impact, chemical ionization and field desorption mass spectrometry of substituted dihydroxyphenyl-benzodioxins isolated from insect cuticle. Occurrence of thermal decomposition and oligomerization reactions in the mass spectrometer.

The electron impact, field desorption and chemical ionization mass spectra of seven dihydroxyphenyl-benzodioxins isolated from insect cuticle are discussed. Reproducible electron impact and chemical ionization spectra are obtained as a result of thermal decomposition and either electron impact or chemical ionization. In some of the chemical ionization spectra dimerization of the thermal degradation products is observed. Structure determination is possible based upon the electron impact and field desorption spectra.

Catechols↗

PubMed1986

Mass spectral investigations on trichothecene mycotoxins. I. Application of negative ion chemical ionization techniques for the simultaneous and accurate analysis of simple trichothecenes in picogram levels.

A fast and sensitive gas chromatographic/negative ion chemical ionization mass spectrometric method for the simultaneous detection and quantification of several simple trichothecene mycotoxins and related molecules with good precision has been developed. The method consists of the conversion of the polar trichothecenes into their volatile and stable heptafluorobutyryl esters, followed by gas chromatographic/mass spectrometric analysis of the derivatives. The derivatives were ionized under chemical ionization conditions and the negative ions were monitored. The samples were screened for the presence of trichothecenes by monitoring one characteristic ion by selected ion monitoring for each analyte. The detected compounds were confirmed by monitoring 5-6 characteristic ions by selected ion monitoring whenever the amount of analyte present was insufficient to obtain a full scan negative ion chemical ionization mass spectrum. Two semi-synthetic trichothecenes, 4-deoxyverrucarol and 16-hydroxyverrucarol, were investigated and found to be adequate internal standards both for detection and quantification of these toxic compounds. Femtogram and low picogram (1-5 pg) quantities of these compounds could be detected and confirmed, respectively, by this procedure. A short clean-up procedure using Sep-Pak (silica gel) cartridges was developed and found to be applicable for the analysis of some real samples. Several spiked and real samples were analysed by this method, with excellent sensitivity and precision.

Chemical Phenomena↗

PubMed1986

Quantification of nitrendipine by stable isotope dilution and electron-capture negative ion chemical ionization.

The electron-capture properties of nitrendipine, a 1,4-dihydro-pyridine derivative with antihypertensive activity, have been applied to develop a sensitive and specific assay in biological fluids using capillary column gas chromatography and measurement in negative ion chemical ionization mode. The synthesis of a 13C4-labelled analogue suitable as a biological internal standard for bioavailability studies and of a 2H8-labelled analogue, which serves as internal standard, is described. The electron-capture positive ion chemical ionization and electron-capture negative ion chemical ionization mass spectra of nitrendipine and its isotope-labelled analogues are compared. The assay has a detection limit of 100 pg ml-1 plasma with a coefficient of variation of 10.2% using the selected ion monitoring mode and electron-capture negative ion chemical ionization. The method is specific, sensitive and accurate to determine terminal half-life times after intravenous and oral administration of nitrendipine and its 13C-analogue. From the nearly identical plasma concentration-time profile of nitrendipine and its 13C-labelled analogue, an isotopic effect can be excluded. Thus, the synthesized 13C4-analogue should be well suited as a biological standard for bioavailability studies.

Adult↗

PubMed2006

Slater-like model for carbon 1s core ionization energies of halomethanes.

Based on the atomic electron affinity EA, the average energy of the valence-shell electrons EI and the polarizability alpha, the charge effect and the relaxation effect were evaluated for the carbon 1s core ionization energies of halomethanes CHnY4-n-mZm (Y, Z=F, Cl, Br, I). The charge effect was scaled by the electronegativity discrepancy (the discrepancy of EA and the discrepancy of EI between the C and H or halogen atom in the C-H or C-halogen chemical bond). The relaxation effect (induced dipole) was scaled by the charge on the carbon atom together with the polarizability of the H and halogen atoms. Further, the electrostatic relaxation shielding DeltaSi of the carbon 1s electron in the halomethane was expressed by the charge effect together with the relaxation effect. By introducing DeltaSi into the Slater model, a Slater-like model was obtained for calculating the carbon 1s core ionization energy E1,C of halomethane, whose correlation coefficient r is 0.99985 and the average absolute error is only 0.041 eV between the calculated and the experimental carbon 1s core ionization energies for 27 halomethanes. Also the cross-correlation was tested by the leave-one-out (LOO) cross-validation method, and the obtained model has good predictive ability and stability (the correlation coefficient rcv is 0.99976, the average absolute error between the predicted and the experimental values is only 0.052 eV). The proposed model perhaps lays a good foundation for computing the core ionization energies of various atoms in more complex molecules.

Journal Article↗

PubMedDate not supplied

The ionization behavior of fatty acids and bile acids in micelles and membranes.

The ionization behavior of carboxylic acids including aliphatic chain fatty acids and bile acids in solutions, micelles, membranes and proteins is of considerable biological interest. The 13C nuclear magnetic resonance chemical shift of carboxyl carbon of a variety of acids has been shown to be a linear function of the state of ionization of the carboxyl group. Thus, by measuring the chemical shift as a function of the amount of acid or base added to a solution, the state of ionization and the apparent pKa of the carboxyl group may be determined. The method is illustrated in this paper using butyric acid, and results (given as apparent pKa values) are tabulated for a variety of fatty acids and cholic acid in different environments such as monomeric solutions, micelles, membranes and bound to albumin. The apparent pKa varies greatly depending upon the environment. For instance, the apparent pKa of oleic acid is about 4.2 when bound to albumin whereas it is about 7.5 when incorporated in the bilayer of a phospholipid vesicle. Cholic acid shows similar changes in the apparent pKa, being approximately 5.2 in sodium taurocholate micelles and at least 6.8 in phospholipid vesicles. The use of 13C nuclear magnetic resonance (NMR) and, in particular, 13C NMR of 13C-enriched carboxyl groups provides a method for direct observation of the state of ionization of the carboxyl group in biologically interesting acids. Such techniques may be adapted for use in biological systems, such as cells or tissues.

Albumins↗

PubMed2001

Analysis of ethoxylated nonionic surfactants and their metabolites by liquid chromatography/atmospheric pressure ionization mass spectrometry.

The widespread use and questionable environmental acceptability of nonionic surfactants make the alkylphenol ethoxylates (APEOs) and their neutral and acidic degradation products a focus of interest in environmental analytical chemistry. The characterization and especially quantification of polyethoxylate mixtures in environmental matrices is a challenge, because of the complexity of the mixtures. A review on trace analysis of APEOs using atmospheric pressure ionization mass spectrometry, including sample preparation and liquid chromatographic separation, is presented. In this Special Feature, the performances of two ionization methods, atmospheric pressure chemical ionization and electrospray ionization, is discussed in terms of selectivity and sensitivity toward oligomeric mixtures of APEOs. Capabilities and limitations associated with the liquid chromatographic/mass spectrometric detection of APEOs, their main degradation products and their halogenated metabolites, and also specific issues related to the sample preparation, formation of fragments, adducts and cluster ions, quantification of oligomeric mixtures and signal suppression effects in complex matrices, are discussed. Conclusions and future perspectives are outlined.

Chromatography, High Pressure Liquid↗

PubMed2005

Electrolytic electrospray ionization mass spectrometry of quaterthiophene-bridged bisporphyrins: beyond the identification tool.

Several quaterthiophene-bridged bisporphyrins were analyzed by electrospray ionization mass spectrometry (ESI-MS). The active centers of these molecular assemblies are two porphyrins moieties complexed (Z) or not (H) with a metal ion, typically Zn(2+), and the spacer is a quaterthiophene. The two end-groups were chemically linked to the quaterthiophene spacers by (i) a C--C single bond, (ii) a trans double bond or (iii) a triple bond. The formation of charged species either by protonation ([M + H](+) and [M + 2H](2+)) or electron(s) loss (M(+) and M(2+)), account for the occurrence of electrochemical processes in the basic operation of an electrospray source acting in a non-aqueous solvent. The nature of the observed charged species is correlated with the electro-oxidation properties and proton production by electro-oxidation of residual water. The occurence of these electrochemical reaction is proposed when the electroactivity of the electrosprayed substrates is not sufficient to support the current demand of the ESI source. In this way, the results obtained from the analysed series suggest the occurrence of such a process when the interfacial potential of the metal capillary reaches a value of 0.75 V vs Ag/AgCl. The results of theoretical calculations confirm the importance of the ionization energy with regard to the protonation energy in the course of the ionization reaction. The structural differences at the porphyrin-linker junctions lead to significantly smaller ionization energy in the case of the trans double bond. The MS observation of discharged dimers from molecular assemblies, including two complexed porphyrins ZZ or two free bases HH as end-group and a triple bond as the quaterthiophene-bisporphyrin junction, indicates together with molecular modelling (carried out at the semi-empirical PM3 level), that the planar and symmetric structures favour stacking.

Journal Article↗