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Origin and Phylogeny of Microbes Living in Permanent Antarctic Lake Ice.

A BSTRACTThe phylogenetic diversity of bacteria and cyanobacteria colonizing sediment particles in the permanent ice cover of an Antarctic lake was characterized by analyses of 16S rRNA genes amplified from environmental DNA. Samples of mineral particles were collected from a depth of 2.5 m in the 4-m-thick ice cover of Lake Bonney, McMurdo Dry Valleys, Antarctica. A rRNA gene clone library of 198 clones was made and characterized by sequencing and oligonucleotide probe hybridization. The library was dominated by representatives of the cyanobacteria, proteobacteria, and Planctomycetales, but also contained diverse clones representing many other microbial groups, including the Acidobacterium/Holophaga division, the Green Non-Sulfur division, and the Actinobacteria. Six oligonucleotide probes were made for the most abundant clades recovered in the library. To determine whether the ice microbial community might originate from wind dispersal of the algal mats found elsewhere in Taylor Valley, the probes were hybridized to 16S rDNAs amplified from three samples of terrestrial cyanobacterial mats collected at nearby sites, as well as to bacterial 16S rDNAs from the lake ice community. The results demonstrate the presence of a diverse microbial community dominated by cyanobacteria in the lake ice, and also show that the dominant members of the lake ice microbial community are found in terrestrial mats elsewhere in the area. The lake ice microbial community appears to be dominated by organisms that are not uniquely adapted to the lake ice ecosystem, but instead are species that originate elsewhere in the surrounding region and opportunistically colonize the unusual habitat provided by the sediments suspended in lake ice.

Journal Article↗

Greenhouse gases in non-oxygenated and artificially oxygenated eutrophied lakes during winter stratification.

Concentrations of dissolved methane (CH4), carbon dioxide (CO2), and nitrous oxide (N2O) were measured in the water columns of non-oxygenated and artificially oxygenated, ice-covered eutrophied lakes in the mid-boreal zone in Finland during late winter 1997 and 1999. Sampling was conducted during winter stratification, the critical period for oxygen (O2) deficiency in seasonally ice-covered, thermally stratified lakes. Oxygen concentrations were maintained at least at a moderate level throughout the oxygenated water columns, whereas the non-oxygenated columns suffered anoxic hypolimnia. The mean concentrations of dissolved CH4 exceeding the atmospheric equilibrium were greater in the non-oxygenated water columns (20.6-154 microM) than in the oxygenated ones (0.01-1.41 microM). In contrast, the mean excess CO2 concentrations varied less between the non-oxygenated and oxygenated sites (0.28-0.47 and 0.25-0.31 mM, respectively). Oxygenated water columns had greater mean excess concentrations of N2O (0.018-0.032 microM) than the non-oxygenated ones (0.005-0.024 microM). If the accumulated greenhouse gas stores in the water columns during winter are assumed to be released to the atmosphere during the spring overturn, the global warming potentials (GWP, time horizon 100 yr) of these potential emissions at the non-oxygenated, eutrophic study sites ranged from 177 to 654 g CO2 equivalent (CO2-e) m-2 compared with 144 to 173 g CO2-e m-2 at the oxygenated sites. The increase in the accumulation of CH4 was the main reason for the higher GWP of the non-oxygenated sites. Anthropogenic eutrophication of lake ecosystems can generate increased CH4 emissions due to associated O2 depletion of their sediment and water column.

Carbon Dioxide↗

[Bacterial processes of photosynthesis and dark assimilation of carbon dioxide in the lakes of Bunger Hills Oasis in Eastern Antarctica].

Photosynthetic and dark assimilation of carbon dioxide was studied in both perennially and temporarily ice-covered lakes of the antarctic oasis Bunger Hills. The intensity of these processes in the lakes studied varied from 0.08 to 326 mg C/(m3 day) and correlated with water mineralization. Irrespective of the character of ice-cover, a chemical composition of water in antarctic water ecosystems affected the organic matter photo-production to a greater extent than the intensity of photosynthetically available radiation. With the method of polymerase chain reaction, the predominance of oxygenic phototrophic microorganisms carrying RuBisCo genes was revealed in all the lakes examined. The results obtained and the literature data unambiguously point to the photosynthetic production of organic matter by cyanobacteria as the main biogeochemical process that determines all the other metabolic strategies in antarctic water ecosystems studied hitherto.

Antarctic Regions↗

Viruses in Antarctic lakes.

Water samples collected from four perennially ice-covered Antarctic lakes during the austral summer of 1996-1997 contained high densities of extracellular viruses. Many of these viruses were found to be morphologically similar to double-stranded DNA viruses that are known to infect algae and protozoa. These constitute the first observations of viruses in perennially ice-covered polar lakes. The abundance of planktonic viruses and data suggesting substantial production potential (relative to bacteria] secondary and photosynthetic primary production) indicate that viral lysis may be a major factor in the regulation of microbial populations in these extreme environments. Furthermore, we suggest that Antarctic lakes may be a reservoir of previously undescribed viruses that possess novel biological and biochemical characteristics.

Antarctic Regions↗

Dark Dune Spots: possible biomarkers on Mars?

Dark Dune Spots (DDSs) are transitional geomorphologic formations in the frost-covered polar regions of Mars. Our analysis of the transformations and arrangements of subsequent stages of DDSs into time sequence revealed their: (i) hole-like characteristics, (ii) development and formation from the bottom of the frosted layer till the disapperance of the latter, (iii) repeated (seasonal and annual) appearance in a pattern of multiple DDSs on the surface, and (iv) probable origin. We focused our studies on a model in which DDSs were interpreted as objects triggered by biological activity involved in the frosting and melting processes. We discuss two competing interpretations of DDSs: development by defrosting alone, and by defrosting and melting enhanced by the activity of Martian Surface Organisms (MSOs). MSOs are hypothetical Martian photosynthetic surface organisms thought to absorb sunlight. As a result they warm up by late winter and melt the ice around them, whereby their growth and reproduction become possible. The ice cover above the liquid water lens harbouring the MSOs provides excellent heat and UV insulation, prevents fast evaporation, and sustains basic living conditions until the ice cover exists. When the frost cover disappears MSOs go to a dormant, desiccated state. We propose further studies to be carried out by orbiters and landers travelling to Mars and by analysis of partial analogues on earth.

Cold Climate↗

Trace metals in Antarctica related to climate change and increasing human impact.

Metals are natural constituents of the abiotic and biotic components of all ecosystems, and under natural conditions they are cycled within and between the geochemical spheres--the atmosphere, lithosphere, hydrosphere, and biosphere--at quite steady fluxes. In the second half of the twentieth century, the huge increase in energy and mineral consumption determined anthropogenic emissions of several metals exceeding those from natural sources, e.g., volcanoes and windborne soil particles. In the Northern Hemisphere, the biogeochemical cycles of Pb, Cd, Zn, Cu, and other metals were significantly altered, even in Arctic regions. On the contrary, available data on trace metal concentrations in abiotic matrices from continental Antarctica, summarized in this review, suggest that the biogeochemical cycle of Pb is probably the only one that has been significantly altered by anthropogenic emissions in Antarctica and elsewhere in the Southern Hemisphere, especially in the period 1950-1975. Environmental contamination by other metals from anthropogenic sources in Antarctica itself can generally only be detected in snow samples taken within a range of a few kilometers or several hundred meters from scientific stations. Local metal pollution from human activities in Antarctica may compromise studies aimed at assessing the biogeochemical cycle of trace elements and the effects of global climate change. Thus, this review focuses on concentrations of metals in atmospheric particulate, snow, surface soils, and freshwater from the Antarctic continent and surface sediments and seawater from the Southern Ocean, which can plausibly be regarded as global background values of trace elements. These baselines are also necessary in view of the construction of new stations, the expansion of existing facilities to support research, and the growth of tourism and fisheries. Despite difficulties in making comparisons with data from other remote areas of the world, concentrations of trace metals in most samples of atmospheric particulates, snow, ice, soils, and marine sediments from Antarctica can be taken as global background levels. Comparison between the results of trace element surveys in marine waters of the Southern Ocean and in other seas is practically impossible. The upwelling or subduction of water masses, the seasonality in ice cover and in phytoplankton biomass, the low fallout of atmospheric dust, and many other peculiar characteristics of the Southern Ocean make concentrations of trace metals in surface waters quite variable in space and time. The depletion of nutrients in surface waters, which is a regular feature of many marine environments, rarely occurs in the Southern Ocean. Waters in some regions are characterized by very low concentrations of Fe and Mn, whereas in others the content of Cd is relatively high at the beginning of summer and may decrease about one order of magnitude during the phytoplankton bloom. Although in most Antarctic coastal ecosystems the input of metals from geochemical and anthropogenic sources and from long-range transport is negligible, concentrations of Cd in the waters and biota may be higher than in waters and related species of organisms from polluted coastal areas. Like the Southern Ocean, Antarctic lakes have many peculiar characteristics. They are often perennially ice covered and without outlet, and their water, which is gained only from short-term melting of snow and glaciers in summer, is lost mainly by sublimation of surface ice. Several lakes are distinctly stratified: the water under the ice may be cool, rich in oxygen, and among the cleanest and clearest of natural waters, whereas water near the bottom becomes anoxic, tepid, and richer in major and trace elements. Considering the specificity of Antarctic environments, to evaluate the extent and consequences of global changes and increasing human activities in Antarctica itself, research on the biogeochemistry of trace metals and monitoring programs

Animals↗

Detection of acetylene in the infrared spectrum of comet Hyakutake.

Comets are rich in volatile materials, of which roughly 80% (by number) are water molecules. Considerable progress is being made in identifying the other volatile species, the abundances of which should enable us to determine whether comets formed primarily from ice-covered interstellar grains, or from material that was chemically processed in the early solar nebula. Here we report the detection of acetylene (C2H2) in the infrared spectrum of comet C/1996 B2 (Hyakutake). The estimated abundance is 0.3-0.9%, relative to water, which is comparable to the predicted solid-phase abundance in cold interstellar clouds. This suggests that the volatiles in comet Hyakotake may have come from ice-covered interstellar grains, rather than material processed in the accretion disk out of which the Solar System formed.

Acetylene↗

Effects of climate warming, North Atlantic Oscillation, and El Niño-Southern Oscillation on thermal conditions and plankton dynamics in northern hemispheric lakes.

Impacts of climate warming on freshwater ecosystems have been documented recently for a variety of sites around the globe. Here we provide a review of studies that report long-term (multidecadal) effects of warming trends on thermal properties and plankton dynamics in northern hemispheric lakes. We show that higher lake temperatures, shorter periods with ice cover, and shorter stagnation periods were common trends for lakes across the hemisphere in response to the warmer conditions. Only for shallow dimictic lakes was it observed that deep-water temperatures decreased. Moreover, it became evident that phytoplankton dynamics and primary productivity altered in conjunction with changes in lake physics. Algal spring blooms developed early and were more pronounced in several European lakes after mild winters with short ice cover periods, and primary productivity increased in North American lakes. Effects of elevated temperatures on zooplankton communities were seen in an early development of various species and groups, as is documented for cladocerans, copepods, and rotifers in European lakes. Furthermore, thermophile species reached higher abundance in warmer years. Obviously, the nature of responses is species specific, and depends on the detailed seasonal patterning of warming. Complex responses such as effects propagating across trophic levels are likely, indicating that observed climate-ecosystem relationships are not generally applicable. Nonetheless, the picture emerges that climate-driven changes in freshwater ecosystems may be synchronised to a certain extent among lakes even over great distances if climatic influences are not masked by anthropogenic impacts or differences in lake morphology. Macro-scale climatic fluctuations--such as the North Atlantic Oscillation or the El Niño-Southern Oscillation--were identified as the most important candidates responsible for such coherence, with the former predominating in Europe and the latter in North America. We emphasise, however, that the driving mechanisms and the future behaviour of these oscillations are rather uncertain, which complicates extrapolation of observed effects into the future. Thus, it is necessary to quantify the most important climate-ecosystem relationships in models of appropriate complexity. Such models will help elucidate the multiple pathways climate affects freshwater ecosystems, and will indicate possible adverse effects of a warmer future climate.

Animals↗

Protactinium-231 and thorium-230 abundances and high scavenging rates in the western arctic ocean

The Canadian Basin of the Arctic Ocean, largely ice covered and isolated from deep contact with the more dynamic Eurasian Basin by the Lomonosov Ridge, has historically been considered an area of low productivity and particle flux and sluggish circulation. High-sensitivity mass-spectrometric measurements of the naturally occurring radionuclides protactinium-231 and thorium-230 in the deep Canada Basin and on the adjacent shelf indicate high particle fluxes and scavenging rates in this region. The thorium-232 data suggest that offshore advection of particulate material from the shelves contributes to scavenging of reactive materials in areas of permanent ice cover.

Journal Article↗

Seasonal community and population dynamics of pelagic bacteria and archaea in a high mountain lake

The seasonal variations in community structure and cell morphology of pelagic procaryotes from a high mountain lake (Gossenkollesee, Austria) were studied by in situ hybridization with rRNA-targeted fluorescently labeled oligonucleotide probes (FISH) and image-analyzed microscopy. Compositional changes and biomass fluctuations within the assemblage were observed both in summer and beneath the winter ice cover and are discussed in the context of physicochemical and biotic parameters. Proteobacteria of the beta subclass (beta-proteobacteria) formed a dominant fraction of the bacterioplankton (annual mean, 24% of the total counts), whereas alpha-proteobacteria were of similar relative importance only during spring (mean, 11%). Bacteria of the Cytophaga-Flavobacterium cluster, although less abundant, constituted the largest fraction of the filamentous morphotypes during most of the year, thus contributing significantly to the total microbial biomass. Successive peaks of threadlike and rod-shaped archaea were observed during autumn thermal mixing and the period of ice cover formation, respectively. A set of oligonucleotide probes targeted to single phylotypes was constructed from 16S rRNA-encoding gene clone sequences. Three distinct populations of uncultivated microbes, affiliated with the alpha- and beta-proteobacteria, were subsequently monitored by FISH. About one-quarter of all of the beta-proteobacteria (range, 6 to 53%) could be assigned to only two phylotypes. The bacterial populations studied were annually recurrent, seasonally variable, and vertically stratified, except during the periods of lake overturn. Their variability clearly exceeded the fluctuations of the total microbial assemblage, suggesting that the apparent stability of total bacterioplankton abundances may mask highly dynamic community fluctuations.

Journal Article↗

Radiative habitable zones in martian polar environments.

The biologically damaging solar ultraviolet (UV) radiation (quantified by the DNA-weighted dose) reaches the martian surface in extremely high levels. Searching for potentially habitable UV-protected environments on Mars, we considered the polar ice caps that consist of a seasonally varying CO2 ice cover and a permanent H2O ice layer. It was found that, though the CO2 ice is insufficient by itself to screen the UV radiation, at approximately 1 m depth within the perennial H2O ice the DNA-weighted dose is reduced to terrestrial levels. This depth depends strongly on the optical properties of the H2O ice layers (for instance snow-like layers). The Earth-like DNA-weighted dose and Photosynthetically Active Radiation (PAR) requirements were used to define the upper and lower limits of the northern and southern polar Radiative Habitable Zone (RHZ) for which a temporal and spatial mapping was performed. Based on these studies we conclude that photosynthetic life might be possible within the ice layers of the polar regions. The thickness varies along each martian polar spring and summer between approximately 1.5 and 2.4 m for H2O ice-like layers, and a few centimeters for snow-like covers. These martian Earth-like radiative habitable environments may be primary targets for future martian astrobiological missions. Special attention should be paid to planetary protection, since the polar RHZ may also be subject to terrestrial contamination by probes.

Arctic Regions↗

Gas hydrates of argon and methane synthesized at high pressures: composition, thermal expansion, and self-preservation.

For the first time, the compositions of argon and methane high-pressure gas hydrates have been directly determined. The studied samples of the gas hydrates were prepared under high-pressure conditions and quenched at 77 K. The composition of the argon hydrate (structure H, stable at 460-770 MPa) was found to be Ar.(3.27 +/- 0.17)H(2)O. This result shows a good agreement with the refinement of the argon hydrate structure using neutron powder diffraction data and helps to rationalize the evolution of hydrate structures in the Ar-H(2)O system at high pressures. The quenched argon hydrate was found to dissociate in two steps. The first step (170-190 K) corresponds to a partial dissociation of the hydrate and the self-preservation of a residual part of the hydrate with an ice cover. Presumably, significant amounts of ice Ic form at this stage. The second step (210-230 K) corresponds to the dissociation of the residual part of the hydrate. The composition of the methane hydrate (cubic structure I, stable up to 620 MPa) was found to be CH(4).5.76H(2)O. Temperature dependence of the unit cell parameters for both hydrates has been also studied. Calculated from these results, the thermal expansivities for the structure H argon hydrate are alpha(a) = 76.6 K(-1) and alpha(c) = 77.4 K(-1) (in the 100-250 K temperature range) and for the cubic structure I methane hydrate are alpha(a) = 32.2 K(-1), alpha(a) = 53.0 K(-1), and alpha(a) = 73.5 K(-1) at 100, 150, and 200 K, respectively.

Journal Article↗

[Dynamics of ecological-biochemical characteristics of the sea ice in the coastal zone of the White sea].

The distribution of salinity, silicon and phosphorus contents, and hydrolytic enzyme activities along a sea-coast transect was studied in melted ice cores and water samples taken from under the ice cover in the periods of active ice formation and melting in the Kandalaksha Bay, White Sea. The species list of identified algae was compiled, which included 170 species and varieties (90% of them belonged to diatoms). Strong correlations were revealed between the salinity of water samples and the content of silicon, protease activity, and the species composition of algae. Preliminary estimations of the rate of photosynthetic processes in individual cells of algae belonging to the mass species of the ice flora are discussed.

Amylases↗

RESEARCH: Projected Climate Change Effects on Winterkill in Shallow Lakes in the Northern United States.

/ Each winter, hundreds of ice-covered, shallow lakes in the northern United States are aerated to prevent winterkill, the death of fish due to oxygen depletion under the ice. How will the projected climate warming influence winterkill and the need to artificially aerate lakes? To answer this question, a deterministic, one-dimensional year-round water quality model, which simulates daily dissolved oxygen (DO) profiles and associated water temperatures as well as ice/snow covers on lakes, was applied. Past and projected climate scenarios were investigated. The lake parameters required as model input are surface area, maximum depth, and Secchi depth as a measure of radiation attenuation and trophic state. The model is driven by daily weather data. Weather records from 209 stations in the contiguous United States for the period 1961-1979 were used to represent past climate conditions. The projected climate change due to a doubling of atmospheric CO(2) was obtained from the output of the Canadian Climate Center General Circulation Model. To illustrate the effect of projected climate change on lake DO characteristics, we present herein DO information simulated, respectively, with inputs of past climate conditions (1961-1979) and with a projected 2 x CO(2) climate scenario, as well as differences of those values. Specific parameters obtained were minimum under-ice and lake bottom DO concentration in winter, duration of under-ice anoxic conditions (<0.1 mg/liter) and low DO conditions (<3 mg/liter), and percentage of anoxic and low DO lake volumes during the ice cover period. Under current climate conditions winterkill occurs typically in shallow eutrophic lakes of the northern contiguous United States. Climate warming is projected to eliminate winterkill in these lakes. This would be a positive effect of climate warming. Fish species under ice may still experience periods of stress and zero growth due to low DO (<3 mg/liter) conditions under projected climate warming.

Journal Article↗

Local orbital forcing of antarctic climate change during the last interglacial

During the last interglacial, Antarctic climate changed before that of the Northern Hemisphere. Large local changes in precession forcing could have produced this pattern if there were a rectified response in sea ice cover. Results from a coupled sea ice-ocean general circulation model supported this hypothesis when it was tested for three intervals around the last interglacial. Such a mechanism may play an important role in contributing to phase offsets between Northern and Southern Hemisphere climate change for other time intervals.

Journal Article↗

Influence of crude oil on changes of bacterial communities in Arctic sea-ice.

The danger of a petroleum hydrocarbon spillage in the polar, ice-covered regions is increasing due to oil exploration in Arctic offshore areas and a growing interest in using the Northern Sea Route (NSR) as an alternative transportation route for Arctic oil and gas. However, little is known about the potential impact of accidental oil spills on this environment. We investigated the impact of crude oil on microbial community composition in six different Arctic sea-ice samples incubated with crude oil at 1 degrees C in microcosms for one year. Alterations in the composition of bacterial communities were analyzed with the culture-independent molecular methods DGGE (denaturing gradient gel electrophoresis) and FISH (fluorescence in situ hybridization). DGGE, FISH and cultivation methods revealed a strong shift in community composition toward the gamma-proteobacteria in sea-ice and melt pool samples incubated with crude oil. Marinobacter spp., Shewanella spp. and Pseudomonas spp. were the predominant phylotypes in the oil-treated microcosms. The ability of indigenous sea-ice bacteria to degrade hydrocarbons at low temperature (1 degrees C) was tested using four representative strains cultivated from sea-ice enriched with crude oil. [14C]Hexadecane was degraded by the sea-ice isolates at 20-50% capacity of the mesophilic type strain Marinobacter hydrocarbonoclasticus, a known hydrocarbon degrader, incubated at 22 degrees C.

Alkanes↗