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Keratin transgenic and knockout mice: functional analysis and validation of disease-causing mutations.

The intermediate filament (IF) cytoskeleton of mammalian epithelia is generated from pairs of type I and type II keratins that are encoded by two large gene families, made up of 54 genes in humans and the mouse. These genes are expressed in a spatiotemporal and tissue-specific manner from the blastocyst stage onward. Since the discovery of keratin mutations leading to epidermolysis bullosa simplex, mutations in at least 18 keratin genes have been identified that result in keratinopathies of the epidermis and its appendages. Recently, noncanonical mutations in simple epithelial keratins were associated with pancreatic, liver, and intestinal disorders, demonstrating that keratins protect epithelia against mechanical and other forms of stress. In recent years, animal models provided novel insight and significantly improved understanding of IF function in tissue homeostasis and its role in disease. Pathological phenotypes detected in mutant mice generated so far range from embryonic lethality to tissue fragility to subtlety, which often depends on their genetic background. This range implies at least a partial influence of yet unidentified modifier genes on the phenotype after the ablation of the respective keratin. To date, nearly all available keratin mouse models were generated by taking advantage of conventional gene-targeting strategies. To reveal their cell type-specific functions and the mechanisms by which mutations lead to disease, it will be necessary to use conditional gene-targeting strategies and the introduction of point-mutated gene copies. Furthermore, conditional strategies offer the possibility to overcome embryonic or neonatal lethality in some of the keratin-deficient mice.

Animals↗

AKAP12 Regulates Perivascular OPC Accumulation in the Corpus Callosum During Cerebral Hypoperfusion.

Oligodendrocyte precursor cells (OPCs) have been reported to interact with cerebral microvessels, but the extent and spatiotemporal regulation of this relationship across maturation and hypoperfusion-induced stress remain incompletely defined. Here, we quantified OPC-vessel relationships in the mouse corpus callosum using PDGFR-α/OLIG2/CD31 immunohistochemistry and distance-based spatial analysis, classifying OPCs within 10 μm of CD31+ vessels as perivascular OPCs. We show that while total OPC density decreases from development to adulthood, the proportion of perivascular OPCs increases in the mature brain. Under cerebral hypoperfusion induced by bilateral common carotid artery stenosis (BCAS), OPC density and the enrichment of perivascular OPCs were increased by Day 7 and remained elevated through Days 14-28. Proliferative OPCs (Ki67-positive OPCs) were preferentially observed within the vessel-proximal domain, indicating that the perivascular compartment functions as a stress-responsive proliferative niche. To identify regulators of this response, we focused on A-kinase anchoring protein 12 (AKAP12), a scaffolding protein expressed in vascular cells. In middle-aged Akap12 global knockout mice subjected to BCAS, hypoperfusion-induced OPC increase was preserved, but perivascular accumulation was reduced. This defect was accompanied by increased IgG leakage without a corresponding reduction in vascular area density, suggesting that AKAP12 supports the integrity of the perivascular microenvironment required for OPC niche remodeling. Together, these findings reveal the perivascular niche as a hypoperfusion-responsive compartment for OPC activation and suggest that AKAP12-dependent vascular barrier integrity contributes to the maintenance of this oligovascular niche.

Animals↗

Cloning and expression analysis of a Parkinson's disease gene, uch-L1, and its promoter in zebrafish.

Three genes, alpha-synuclein, parkin, and ubiquitin C-terminal hydrolase L1 (UCH-L1), have been associated with inherited forms of Parkinson's disease (PD), although their in vivo functions have remained largely unknown. To develop an animal model for the molecular study of PD, we cloned zebrafish uch-L1 cDNA and its gene promoter. Sequence analysis revealed that the zebrafish Uch-L1 is highly homologous (79%) to the human UCH-L1, which is a member of the deubiquitinating enzymes. By whole-mount in situ hybridization, we examined the spatiotemporal expression of uch-L1 mRNA in developing zebrafish embryos. The uch-L1 mRNAs are detected in neuronal cells at the first day of embryo development. The expression domain of uch-L1 overlaps with that of tyrosine hydroxylase, a molecular marker for dopaminergic neurons, in the ventral diencephalon, an equivalent structure to the substantia nigra where PD progresses in human. To further analyze the tissue-specific regulation of uch-L1 gene expression, we also tested its gene promoter activity and showed a preferential neuronal expression in transient transgenic zebrafish embryos. These results suggest that uch-L1 may have an important role in the development of neuronal cells in early embryos as well as in the degeneration and disease of neuronal cells in late adult brain.

Amino Acid Sequence↗

Temporal diversity in the lateral geniculate nucleus of cat.

Reverse correlation was used in conjunction with ternary white noise to estimate the first-order spatiotemporal receptive-field structure of LGN cells in the anesthetized, paralyzed cat. Based on a singular-value decomposition of these data, we conclude that most LGN cells are approximately space-time separable. An analysis of the timecourses of the first singular values revealed a strongly bimodal but continuous distribution of rise times and waveforms. The two modes represented cells generally associated with the lagged and nonlagged classes of Mastronarde (1987a,b), and this was confirmed by their responses to step and sine-modulated spots in their field centers. The intermediate cells, rather than appearing to constitute a separate group, smoothly filled the region between the obviously lagged and nonlagged cells in every respect. These conclusions are limited to X-cells although the data from a much smaller population of Y-cells conform to the same scheme. We conclude that lagged and nonlagged cells represent the modes of a continuous and very broad distribution of temporal responses in the cat LGN.

Animals↗

Patterns of gene expression in the core of Spemann's organizer and activin-treated ectoderm in Cynops pyrrhogaster.

The presumptive pharyngeal endoderm region of the Cynops early gastrula induces head or trunk-tail structures in sandwich culture. Activin-treated ectoderm can mimic this phenomenon at least at the histological level. The patterns of expression of organizer-specific genes were examined to compare these two inductive materials at the molecular level. A chordin cDNA clone from Cynops pyrrhogaster (Cychd) was isolated by reverse transcription-polymerase chain reaction (RT-PCR). Cychd mRNA was first detected in the presumptive pharyngeal endoderm and prechordal plate regions of stage 11 embryos, and was expressed continuously until stage 20. The spatiotemporal expression pattern of Cychd was similar to that of Xenopus chordin. The patterns of expression of organizer-related genes in the pharyngeal endoderm and activin-treated ectoderm were compared by RT-PCR analysis. Expression of Cychd in these two materials peaked at the time when they can induce head structures in sandwich culture. Expression of fork head and goosecoid did not change in the presumptive pharyngeal endoderm over this period. Cychd may play a key role in head formation in the Cynops embryo.

Activins↗

Temporal frequency and velocity-like tuning in the pigeon accessory optic system.

Neurons in the accessory optic system (AOS) and pretectum are involved in the analysis of optic flow and the generation of the optokinetic response. Previous studies found that neurons in the pretectum and AOS exhibit direction selectivity in response to large-field motion and are tuned in the spatiotemporal domain. Furthermore, it has been emphasized that pretectal and AOS neurons are tuned to a particular temporal frequency, consistent with the "correlation" model of motion detection. We examined the responses of neurons in the nucleus of the basal optic root (nBOR) of the AOS in pigeons to large-field drifting sine wave gratings of varying spatial (SF) and temporal frequencies (TF). nBOR neurons clustered into two categories: "Fast" neurons preferred low SFs and high TFs, and "Slow" neurons preferred high SFs and low TFs. The fast neurons were tuned for TF, but the slow nBOR neurons had spatiotemporally oriented peaks that suggested velocity tuning (TF/SF). However, the peak response was not independent of SF; thus we refer to the tuning as "apparent velocity tuning" or "velocity-like tuning." Some neurons showed peaks in both the fast and slow regions. These neurons were TF-tuned at low SFs, and showed velocity-like tuning at high SFs. We used computer simulations of the response of an elaborated Reichardt detector to show that both the TF-tuning and velocity-like tuning shown by the fast and slow neurons, respectively, may be explained by modified versions of the correlation model of motion detection.

Action Potentials↗

Role of knowledge in human visual temporal integration in spatiotemporal noise.

Previous studies have shown how human observers' knowledge about the signal's spatial frequency, spatial phase, and spatial locations affects human performance in detecting and identifying signals in spatial noise. These results have led to the idea that human observers can be modeled as suboptimal Bayesian observers that use a priori information to generate probabilities or likelihoods for hypothesis. This approach has also been applied more recently to object recognition. We investigate whether human observers have the ability to use information about the temporal profile of a temporally modulated signal in temporal information processing. We measure human performance in detecting a time-varying signal embedded in spatiotemporal (dynamic) noise with and without a cue that contains information about the temporal phase of the signal. Results show improvement in performance in the phase-cued condition, suggesting that human observers act as if they have the ability to use knowledge about the temporal shape of the signal when performing temporal information processing. Human performance is consistent with a suboptimal Bayesian observer and a newly proposed Max-Min observer. The results also suggest that models based solely on the integration of the early temporal filters in the human visual system and/or any further integration (e.g., probability summation), which do not make use of knowledge about the signals' temporal profile, are incomplete models of human visual detection in spatiotemporal noise.

Adult↗

Understanding intracellular transport processes pertinent to synthetic gene delivery via stochastic simulations and sensitivity analyses.

A major challenge in synthetic gene delivery is to quantitatively predict the optimal design of polymer-based gene carriers (polyplexes). Here, we report a consistent, integrated, and fundamentally grounded computational methodology to address this challenge. This is achieved by accurately representing the spatio-temporal dynamics of intracellular structures and by describing the interactions between gene carriers and cellular components at a discrete, nanoscale level. This enables the applications of systems tools such as optimization and sensitivity analysis to search for the best combination of systems parameters. We validate the approach using DNA delivery by polyethylenimine as an example. We show that the cell topology (e.g., size, circularity, and dimensionality) strongly influences the spatiotemporal distribution of gene carriers, and consequently, their optimal intracellular pathways. The model shows that there exists an upper limit on polyplexes' intracellular delivery efficiency due to their inability to protect DNA until nuclear entry. The model predicts that even for optimally designed polyethylenimine vectors, only approximately 1% of total DNA is delivered to the nucleus. Based on comparison with gene delivery by viruses, the model suggests possible strategies to significantly improve transfection efficiencies of synthetic gene vectors.

Biological Transport, Active↗

Weakly nonlinear analysis of impulsively-forced Faraday waves.

Parametrically-excited surface waves, forced by a repeating sequence of delta-function impulses, are considered within the framework of the Zhang-Viñals model [W. Zhang and J. Viñals, J. Fluid Mech. 336, 301 (1997)]. With impulsive forcing, the linear stability analysis can be carried out exactly and leads to an implicit equation for the neutral stability curves. As noted previously [J. Bechhoefer and B. Johnson, Am. J. Phys. 64, 1482 (1996)], in the simplest case of N=2 equally-spaced impulses per period (which alternate up and down) there are only subharmonic modes of instability. The familiar situation of alternating subharmonic and harmonic resonance tongues emerges only if an asymmetry in the spacing between the impulses is introduced. We extend the linear analysis for N=2 impulses per period to the weakly nonlinear regime, where we determine the leading order nonlinear saturation of one-dimensional standing waves as a function of forcing strength. Specifically, an analytic expression for the cubic Landau coefficient in the bifurcation equation is derived as a function of the dimensionless spacing between the two impulses and the fluid parameters that appear in the Zhang-Viñals model. As the capillary parameter is varied, one finds a parameter regime of wave amplitude suppression, which is due to a familiar 1:2 spatiotemporal resonance between the subharmonic mode of instability and a damped harmonic mode. This resonance occurs for impulsive forcing even when harmonic resonance tongues are absent from the neutral stability curves. The strength of this resonance feature can be tuned by varying the spacing between the impulses. This finding is interpreted in terms of a recent symmetry-based analysis of multifrequency forced Faraday waves [J. Porter, C. M. Topaz, and M. Silber, Phys. Lett. 93, 034502 (2004); C. M. Topaz, J. Porter, and M. Silber, Phys. Rev. E 70, 066206 (2004)].

Journal Article↗

Geographic and temporal trends in influenzalike illness, Japan, 1992-1999.

From 1992 to 1999, we analyzed >2.5 million cases of influenzalike illness (ILI). Nationwide influenza epidemics generally lasted 3-4 months in winter. Kriging analysis, which illustrates geographic movement, showed that the starting areas of peak ILI activity were mostly found in western Japan. Two spreading patterns, monotonous and multitonous, were observed. Monotonous patterns in two seasons featured peak ILI activity that covered all of Japan within 3 to 5 weeks in larger epidemics with new antigenic variants of A/H3N2. Multitonous patterns, observed in the other five seasons, featured peak ILI activity within 12 to 15 weeks in small epidemics without new variants. Applying the kriging method allowed better visualization and understanding of spatiotemporal trends in seasonal ILI activity. This method will likely be an important tool for future influenza surveillance in Japan.

Disease Outbreaks↗

Nonlinear propagation of agonist-induced cytoplasmic calcium waves in single astrocytes.

In astrocytes in primary culture, activation of neurotransmitter receptors results in intracellular calcium signals that propagate as waves across the cell. Similar agonist-induced calcium waves have been observed in astrocytes in organotypic cultures in response to synaptic activation. By using primary cultured astrocytes grown on glass coverslips, in conjunction with fluorescence microscopy we have analyzed agonist-induced Ca2+ wave initiation and propagation in individual cells. Both norepinephrine and glutamate elicited Ca2+ signals which were initiated focally and discretely in one region of the cell, from where the signals spread as waves along the entire length of the cell. Analysis of the wave propagation and the waveform revealed that the propagation was nonlinear with one or more focal loci in the cytoplasm where the wave was regeneratively amplified. These individual loci appear as discrete focal areas 7-15 microns in diameter and having intrinsic oscillatory properties that differ from each other. The wave initiation locus and the different amplification loci remained invariant in space during the course of the experiment and supported an identical spatiotemporal pattern of signalling in any given cell in response to multiple agonist applications and when stimulated with different agonists which are coupled via InsP3. Cytoplasmic Ca2+ concentration at rest was consistently higher (17 +/- 4 nM, mean +/- S.E.M.) in the wave initiation locus compared with the rest of the cytoplasm. The nonlinear propagation results from significant changes in signal rise times, amplitudes, and wave velocity in cellular regions of active loci. Analysis of serial slices across the cell revealed that the rise times and amplitudes of local signals were as much as three- to fourfold higher in the loci of amplification. A phenomenon of hierarchy in local amplitudes of the signal in the amplification loci was observed with the wave initiation locus having the smallest and the most distal locus having the largest amplitude. By this mechanism locally very high concentrations of Ca2+ are achieved in strategic locations in the cell in response to receptor activation. While the average wave velocity calculated over the length of the cell was 10-15 microns/s, in the active loci rates as high as 40 microns/s were measured. Wave velocity was fivefold lower in regions of the cell separating active loci. The differences in the intrinsic oscillatory periods give rise to local Ca2+ waves that show the properties of collision and annihilation. It is hypothesized that the wave front provokes regenerative Ca2+ release from specialized areas in the cell where the endoplasmic reticulum is endowed with higher density of InsP3 receptor channels.(ABSTRACT TRUNCATED AT 400 WORDS)

Animals↗

Diphtheria toxin-mediated cell ablation reveals interregional communication during Arabidopsis seed development.

Fertilization of the female gametophyte in angiosperm plants initiates a process of coordinated development of embryo, endosperm, and seed coat that ensures the production of a viable seed. Mutant analysis has suggested that communication between the endosperm and the seed coat is an important determinant in this process. In addition, cell groups within the embryo, derived from the apical and from the basal cell, respectively, after zygote division, concertedly establish a functional root meristem, and cells in the apical region of the embryo are hypothesized to repress cell divisions in the basal cell-derived suspensor. The available evidence for these interregional communication events mostly relies on the analysis of mutant phenotypes in Arabidopsis. To provide independent and direct evidence for communication events, we used conditional domain-specific expression of the diphtheria toxin A chain (DTA) in developing Arabidopsis seeds. By using a collection of cell- or tissue-type-specific promoters, we show that the mGAL4:VP16/UAS two-component gene expression allows reliable spatiotemporal and conditional expression of the GFP:GUS reporter and the DTA gene in the developing embryo and endosperm. Expression of DTA in the protoderm of the embryo proper led to excessive proliferation of suspensor cells, sometimes resulting in the formation of secondary embryos. Endosperm-specific expression of DTA caused complete cessation of seed growth, followed by pattern defects in the embryo and embryo arrest. Taken together, the results presented here substantiate the evidence for and underline the importance of interregional communication in embryo and seed development and demonstrate the usefulness of conditional toxin expression as a method complementary to phenotypic analysis of developmental mutants.

Agrobacterium tumefaciens↗

Characterization and developmental expression of the amphioxus homolog of Notch (AmphiNotch): evolutionary conservation of multiple expression domains in amphioxus and vertebrates.

Notch encodes a transmembrane protein that functions in intercellular signaling. Although there is one Notch gene in Drosophila, vertebrates have three or more with overlapping patterns of embryonic expression. We cloned the entire 7575-bp coding region of an amphioxus Notch gene (AmphiNotch), encoding 2524 amino acids, and obtained the exon/intron organization from a genomic cosmid clone. Southern blot and PCR data indicate that AmphiNotch is the only Notch gene in amphioxus. AmphiNotch, like Drosophila Notch and vertebrate Notch1 and Notch2, has 36 EGF repeats, 3 Notch/lin-12 repeats, a transmembrane region, and 6 ankyrin repeats. Phylogenetic analysis places it at the base of all the vertebrate genes, suggesting it is similar to the ancestral gene from which the vertebrate Notch family genes evolved. AmphiNotch is expressed in all three embryonic germ layers in spatiotemporal patterns strikingly similar to those of all the vertebrate homologs combined. In the developing nerve cord, AmphiNotch is first expressed in the posteriormost part of the neural plate, then it becomes more broadly expressed and later is localized dorsally in the anteriormost part of the nerve cord corresponding to the diencephalon. In late embryos and larvae, AmphiNotch is also expressed in parts of the pharyngeal endoderm, in the anterior gut diverticulum, and, like AmphiPax2/5/8, in the rudiment of Hatschek's kidney. A comparison with Notch1 and Pax5 and Pax8 expression in the embryonic mouse kidney helps support homology of the amphioxus and vertebrate kidneys. AmphiNotch is also an early marker for presumptive mesoderm, transcripts first being detectable at the gastrula stage in a ring of mesendoderm just inside the blastopore and subsequently in the posterior mesoderm, notochord, and somites. As in sea urchins and vertebrates, these domains of AmphiNotch expression overlap with those of several Wnt genes and brachyury. These relationships suggest that amphioxus shares with other deuterostomes a common mechanism for patterning along the anterior/posterior axis involving a posterior signaling center in which the Notch and Wnt pathways and brachyury interact.

Amino Acid Sequence↗

gamma-diketone peripheral neuropathy. II. Neurofilament subunit content.

Quantitative morphometric analyses have demonstrated that axon atrophy is the primary neuropathic alteration in peripheral nerve of 2,5-hexanedione (HD)-intoxicated rats (Lehning et al., Toxicol. Appl. Pharmacol. 165, 127-140, 2000). Research suggests that axon caliber is regulated by neurofilament (NF) content and density. Therefore, as a possible mechanism of atrophy, NF subunit (NF-L, -M, and -H) proteins were quantitated in moderately affected rats intoxicated with HD at three daily dosing rates (175, 250, and 400 mg/kg/day). Analyses of subunit protein contents in proximal sciatic nerves indicated uniformly small decreases, which corresponded to minimal changes in axon area occurring in this region. In distal tibial nerve, subunit proteins were decreased substantially (40-70%) when rats were exposed to the 175 and 250 mg/kg/day doses. These reductions in NFs corresponded to significant decreases (approximately 50%) in tibial axon area induced by lower dosing rates. In contrast, 400 mg/kg/day produced similar changes in caliber but smaller reductions (18-25%) in NF-L, -M, and -H levels. This suggests that a decrement in axonal NF content is unlikely to be solely responsible for gamma-diketone-induced axon atrophy and that the corresponding mechanism probably involves additional changes in factors regulating NF density. Analysis of NF content in peripheral nerve also identified the presence of anomolous higher molecular weight NF-H proteins. However, the neurotoxicological significance of these abnormal subunits is uncertain based on their limited occurrence and inconsistent spatiotemporal expression.

Animals↗

Perception of apparent motion between dissimilar gratings: spatiotemporal properties.

What determines the strength of texture-defined apparent motion perception when the stimulus has no net directional energy in the Fourier domain? In a previous paper [Werkhoven, Sperling & Chubb (1993) Vision Research, 33, 463-485] we demonstrated the counterintuitive finding that the correspondence in spatial frequency and in modulation amplitude between neighboring patches of texture in a spatiotemporal motion path are irrelevant to motion strength. Instead, we found strong support for what we call a single channel or one-dimensional motion computation: a simple nonlinear transformation of the image, followed by standard motion analysis. Here, we further studied the dimensionality of the motion computation in a parameter space that includes texture orientation and stimulus display rate in addition to texture spatial frequency and modulation amplitude. We used ambiguous motion displays in which one motion path, consisting of patches of nonsimilar texture, competes with another motion path comprised entirely of similar texture patches. The data show that motion between dissimilar patches of texture that are orthogonally oriented, have a two octave difference in spatial frequency and differ 50% in modulation amplitude can easily dominate motion between similar patches of texture. A single channel accounts for more than 70% of texture-from-motion strength for the parameter space examined and this channel is invariant for stimulus display rates varying over a four-fold range.

Humans↗

Spatiotemporal adaptation through corticothalamic loops: a hypothesis.

The thalamus is the major gate to the cortex and its control over cortical responses is well established. Cortical feedback to the thalamus is, in turn, the anatomically dominant input to relay cells, yet its influence on thalamic processing has been difficult to interpret. For an understanding of complex sensory processing, detailed concepts of the corticothalamic interplay need yet to be established. Drawing on various physiological and anatomical data, we elaborate the novel hypothesis that the visual cortex controls the spatiotemporal structure of cortical receptive fields via feedback to the lateral geniculate nucleus. Furthermore, we present and analyze a model of corticogeniculate loops that implements this control, and exhibit its ability of object segmentation by statistical motion analysis in the visual field.

Adaptation, Physiological↗

Telencephalic input to the pretectum of pigeons: an electrophysiological and pharmacological inactivation study.

The pretectal nucleus lentiformis mesencephali (LM) and the nucleus of the basal optic root (nBOR) of the avian accessory optic system (AOS) are retinal-recipient visual nuclei involved in the analysis of optic flow that results from self-motion, and in the generation of the optokinetic response. Neurons in these nuclei show direction selectivity in response to large-field motion and are tuned in the spatiotemporal domain. In addition to retinal afferentation, both the nBOR and LM receive afferents from the Wulst, which is thought to be the avian homolog of the primary visual cortex. We examined the effects of Wulst electrical stimulation on the activity of LM neurons and recorded the directional and spatiotemporal tuning of LM neurons in pigeons before, during, and after the Wulst was temporarily inactivated by lidocaine injection. In response to Wulst electrical stimulation, LM neurons showed either short-latency excitation followed by longer-latency inhibition (W+ cells), or only a longer-latency inhibition (W- cells). The average response latencies for W+ and W- cells were 13.5 and 28.3 ms, respectively. The effects of Wulst stimulation did not correlate with either the directional or spatiotemporal tuning of the LM neurons. Injection of lidocaine into the nBOR reduced the longer-latency oscillations of W+ and W- cells. When the Wulst was temporarily inactivated by lidocaine neither the directional nor spatiotemporal response properties of LM neurons were affected. The possible functions of the projection from the Wulst to the LM are discussed.

Action Potentials↗

Image analysis of olfactory responses in the procerebrum of the terrestrial slug Limax marginatus.

Neural oscillations have been found to occur in the olfactory centers of some vertebrates and invertebrates, including the procerebrum of the terrestrial slug Limax marginatus. Using optical recording with the potential-sensitive dye di-4-ANEPPS, we analyzed the spatiotemporal pattern of procerebral neural activities in response to odorants applied to an in vitro brain-superior tentacle preparation. The odor of rat chow, on which the slugs were normally fed, increased the frequency of the oscillation. Garlic odor, which induced aversive behavior in the slug, caused a transient increase in oscillation frequency during stimulation, followed by a second increase in oscillation frequency when the stimulus was terminated. Wave propagation from the distal to the proximal region of the procerebrum was accelerated in parallel with modulation of the frequency. The cycle-by-cycle average of the optical signals showed that a large area of the cerebral ganglia, including the procerebrum, was depolarized during the initial increase in frequency. During the second increase, however, the net depolarization was most prominent in the terminal mass of the procerebrum. These results suggest that the level of depolarization generated by interactions among the neurites projecting to the terminal mass, such as the neurites of the nonbursting neurons, may control neural oscillations in the procerebrum.

Animals↗