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PubMed2025

Genomic Insights Into Convergent Evolution: Adaptation to Rocky Habitats in Rock-Inhabiting Fungi.

Rock-inhabiting fungi (RIF), obligate colonizers of bare rocks, are primarily distributed across two major phylogenetic classes: Dothideomycetes and Eurotiomycetes. These fungi display striking convergence in morphology and physiology, characterized by meristematic growth, melanized cell walls, and extreme stress tolerance. However, the genomic underpinnings of this adaptive convergence remain poorly understood. Here, through comparative genomic analysis of 9 RIF and 18 non-RIF fungi, we revealed that RIF possess compact, gene-dense genomes marked by contraction of genes involved in nutrient uptake and secondary metabolism, alongside expansions in cell wall biosynthesis, lipid metabolism, and stress-responsive pathways. We identified two genes under positive selection across multiple RIF lineages: Ino80 ATPase (chromatin remodeling) and the ER chaperone BiP (protein folding). Further evidence of convergence was found in the mannosyltransferase Mnn9, a key enzyme in cell wall assembly, where two RIF-specific amino acid substitutions were predicted to enhance protein stability. Additionally, a unique Mnn9-like clade has expanded exclusively in RIF. RNAi-mediated knockdown of an Mnn9-like gene in Rachicladosporium sp. confirmed its role in cell wall mannosylation, osmotic stress response, and the transition from meristematic to filamentous growth. Our findings elucidate a set of common genomic adaptations and highlight the specialized evolution of the Mnn9 family in driving the convergent success of phylogenetically diverse RIF in rocky environments.

Phylogeny↗

PubMed1985

Volumetric aerobiological survey of conidial fungi in the North-East Netherlands. II. Comparison of aerobiological data and skin tests with mould extracts in an asthmatic population.

A study was undertaken to see whether the principal airborne fungi in the North-East Netherlands were also found to be the most reactive in skin testing. Atmospheric samples were taken weekly with the Andersen sampler, from April 1981, up to and including, June 1983. At the same time skin tests of 833 patients referred to the outpatient Departments of Pulmonology and Allergology, because of recurrent bronchial obstructive complaints and a suspected allergy, were studied for strongly positive skin reactivity to fungi. 4.6% of the patients reacted with a wheal of 10 mm diameter or more to one or more of the tested fungi. Almost three-quarters of the airborne fungal "flora" was composed of seven genera, namely (in order of occurrence): Cladosporium (42.6%), Botrytis (8.6%), Yeasts (7%), Penicillium (5.8%), Basidiomycetes (5.7%), Aspergillus (3.7%), and Alternaria (0.9%). In skin-testing, however, a different order of occurrence existed: namely: Beauveria (6.8%), Botrytis (6.1%), Aspergillus (4.7%), Mucor (3.8%), Epicoccum (3%), Cladosporium (2.3%), and Alternaria (1.1%). It is concluded that the most prevailing airborne moulds are not necessarily the most potent allergens, at least in skin testing. Aspergillus and Botrytis showed a high sensitization rate, while Cladosporium and Alternaria did not. Botrytis deserves further study because of its frequent airborne occurrence and marked allergenic properties.

Air Microbiology↗

PubMed1989

Distribution of keratinophilic fungi in desert soil of Kuwait.

Forty soil samples from different desert localities in Kuwait were surveyed for keratinophilic and geophilic dermatophytic fungi. Sixteen species classified in 9 genera were recovered on wool baits. Chrysosporium species were the most common fungi: Chr. tropicum (60%), Chr. pannicola (32.5%), Chr. queenslandicum (27.5%), Chr. keratinophilum (25%), Chr. indicum (20%) and the Chrysosporium anamorph of Arthroderma cuniculi. The second dominant genus was Malbranchea (27%) represented by two species; followed by Myceliophthora (10%). A number of cleistothecial keratinophilic species were also reported in restricted areas. Ctenomyces serratus Eidam and its Myceliophthora anamorph were new records to Kuwait. The frequency and distribution of these fungi have been discussed in relation to ecological conditions of desert soils.

Chrysosporium↗

PubMedDate not supplied

In vitro nail invasion by pathogenic and non-pathogenic fungi under different culture conditions.

Data from the literature suggest that the nutritional environment can modify major metabolic functions of fungi and possibly their aggressivity towards keratinous structures. Trichophyton rubrum (TR), Microsporum canis (MC), Scopulariopsis brevicaulis (SB), Aspergillus fumigatus (AF) and Penicillium spec. (P) were inoculated on media of different nutritional value, in presence of nail fragments. The activity of the fungi was evaluated at two and four weeks for intensity and depth of invasion of nail samples. Nail invasion was most pronounced by MC, especially when grown on rice agar or peptone agar. Nail invasion by the other fungi tested was less important, Sabourand glucose and rice agar were most favorable. Our results indicate that nutritional factors can, at least in some fungus species, alter their rate of nail invasion.

Aspergillus fumigatus↗

PubMed1968

Production of ethylene by fungi.

Ethylene was detected by gas chromatography, and verified by chemical means, as a metabolic product of 22 species of fungi. Because 58 of 228 species of fungi produced a gaseous compound with retention time identical to that of authentic ethylene, we believe that this compound is a common metabolic product of fungi.

Acremonium↗

PubMed1988

Resistance of some common fungi to gamma irradiation.

Ten species of fungi representing the genera Alternaria, Aspergillus, Caldosporium, Curvularia, Fusarium, and Penicillium were examined for their relative resistance to gamma irradiation from a 137Cs source. Inactivation doses for dematiaceous fungi in agar medium ranged from 0.6 to greater than 1.7 megarads, whereas those for moniliaceous fungi were less than 0.3 megarad. D10 values (the dose required to reduce the inoculum by 1 log) for Curvularia geniculata (greater than 0.29 megarad) exceeded those for control spores of Bacillus pumilus (0.15 megarad).

Alternaria↗

PubMed1962

Fungi growing on jute fabrics deteriorating under weather exposure and in storage.

Special media suitable for the isolation of fungi growing on jute were developed. Species that would better resist sunlight, such as organisms with dark hyphae and spores or closed fruit bodies, predominated on weather-exposed fabrics. Several strongly cellulolytic organisms not previously implicated in fiber decomposition were isolated from this source. On the other hand, the fungi obtained from jute materials damaged in storage were mostly of the familiar types. Most of the newly isolated fungi are generally missed on ordinary media, but they probably play an important role in the natural decomposition of jute materials.

Fungi↗

PubMed1964

ROLE OF MARINE FUNGI IN THE BIOCHEMISTRY OF THE OCEANS. IV. GROWTH RESPONSES TO SEAWATER INORGANIC MACROCONSTITUENTS.

Sguros, Peter L. (University of Miami, Miami, Fla.), and Jacqueline Simms. Role of marine fungi in the biochemistry of the oceans. IV. Growth responses to seawater inorganic macroconstituents. J. Bacteriol. 88:346-355. 1964.-The filamentous ascomycete Halosphaeria mediosetigera and the deuteromycete Culcitalna achraspora were gravimetrically characterized by growth curves in natural and artificial seawater media. Response to growth media employing these diluents was very similar, and stationary phases of both cultures showed autolysis. The organisms grew at all concentrations of seawater, but growth maxima were observed between 20 and 60%. Neither seawater was able to reduce the requirement for yeast extract. Glass-distilled water was slightly better than artificial seawater for the survival of homogenized, washed, resting mycelia over long periods at 4 C. Regardless of suspending medium, this treatment did not appreciably alter the regenerative vigor of inocula. Qualitative and quantitative variations of artificial seawater, without rigid exclusion of inorganic traces from experimental media, demonstrated separate growth requirements for Na, K, Mg, Ca, and SO(4). Only K and Ca appeared nontoxic at seawater concentrations, however. Some evidence of Na antagonism by Mg was obtained. Responses to test ions were best observed in the absence of seawater amounts of NaCl. Reactions of these generically distinct fungi to most experimental manipulations were markedly alike. Both fungi appeared to be appropriately labeled "marine," judging by criteria currently in general use.

Ascomycota↗

PubMed1998

Rapid extraction of genomic DNA from medically important yeasts and filamentous fungi by high-speed cell disruption.

Current methods of DNA extraction from different fungal pathogens are often time-consuming and require the use of toxic chemicals. DNA isolation from some fungal organisms is difficult due to cell walls or capsules that are not readily susceptible to lysis. We therefore investigated a new and rapid DNA isolation method using high-speed cell disruption (HSCD) incorporating chaotropic reagents and lysing matrices in comparison to standard phenol-chloroform (PC) extraction protocols for isolation of DNA from three medically important yeasts (Candida albicans, Cryptococcus neoformans, and Trichosporon beigelii) and two filamentous fungi (Aspergillus fumigatus and Fusarium solani). Additional extractions by HSCD were performed on Saccharomyces cerevisiae, Pseudallescheria boydii, and Rhizopus arrhizus. Two different inocula (10(8) and 10(7) CFU) were compared for optimization of obtained yields. The entire extraction procedure was performed on as many as 12 samples within 1 h compared to 6 h for PC extraction. In comparison to the PC procedure, HSCD DNA extraction demonstrated significantly greater yields for 10(8) CFU of C. albicans, T. beigelii, A. fumigatus, and F. solani (P < or = 0.005), 10(7) CFU of C. neoformans (P < or = 0.05), and 10(7) CFU of A. fumigatus (P < or = 0.01). Yields were within the same range for 10(8) CFU of C. neoformans and l0(7) CFU of C. albicans for both HSCD extraction and PC extraction. For 10(7) CFU of T. beigelii, PC extraction resulted in a greater yield than did HSCD (P < or = 0.05). Yields obtained from 10(8) and 10(7) CFU were significantly greater for filamentous fungi than for yeasts by the HSCD extraction procedure (P < 0.0001). By the PC extraction procedure, differences were not significant. For all eight organisms, the rapid extraction procedure resulted in good yield, integrity, and quality of DNA as demonstrated by restriction fragment length polymorphism, PCR, and random amplified polymorphic DNA. We conclude that mechanical disruption of fungal cells by HSCD is a safe, rapid, and efficient procedure for extracting genomic DNA from medically important yeasts and especially from filamentous fungi.

Chloroform↗

PubMed1989

Ultrastructural study of galacturonic acid distribution in some pathogenic fungi using gold-complexed Aplysia depilans gonad lectin.

Aplysia gonad lectin, isolated from the mollusc Aplysia depilans, was successfully conjugated to colloidal gold and used for ultrastructural detection of galacturonic acids in some pathogenic fungi. These sugar residues were found to occur in the fibrillar sheath surrounding hyphal cells of Ascocalyx abietina and in intravacuolar dense inclusions of this fungus spores. In hyphae and spores of Ophiostoma ulmi, galacturonic acids were detected mainly in the outermost wall layers. In contrast, these saccharides appeared associated with the innermost wall layers and especially the plasma membrane of Verticillium albo-atrum cells. Galacturonic acids were found to be absent in cells of Fusarium oxysporum f.sp. radicis-lycopersici and Candida albicans. These cytochemical data indicate therefore that a heterogeneity in wall composition exists between ascomycete fungi. The significance of the presence of galacturonic acids in the cell walls of certain fungi is still open to question.

Animals↗

PubMed1979

In vitro survival of human pathogenic fungi in seawater.

The survival of propagules from 4 pathogenic fungi, Trichophyton mentagrophytes, Trichosporon cutaneum, Candida albicans, and Microsporum gypseum was studied in seawater subjected to different temperature (20--35 degrees C) and salinity (6--50%) levels in diurnal rhythm of 12 h cycles. Survival was measured by viability of propagules over a period of 52 weeks. All fungi, except T. cutaneum at 35 degrees C survived the experimental conditions for 52 weeks. Temperature was the most influential factor. When temperature increased, M. gypseum responded with enhanced viability whereas survival for C. albicans and T. cutaneum was inhibited. At 35 degrees C, T. cutaneum was not viable after 6--7 weeks even though it survived the initial 5 weeks with less loss of viability than the other test organisms. No correlation was seen between salinity level and loss of viability. Diurnal light had an inhibitory effect on T. cutaneum and C. albicans survival under in vitro conditions approximating those of seawater in Hawaii. M. gypseum had the highest level of survival over 52 weeks under usual in situ conditions simulated in vitro, followed by T. mentagrophytes, T. cutaneum, and C. albicans. Survival for 52 weeks even when salinity and temperature levels exceed those of the natural habitat indicates that seawater which washes sand beaches can be an environmental niche for potentially pathogenic fungi.

Candida albicans↗

PubMed1990

The occurrence of keratinophilic fungi in sewage sludge from Egypt.

The keratinophilic fungi of 40 sewage sludge samples from Upper Egypt were studied using a goat hair-baiting technique. 43 species representing 22 genera were isolated, 17 species of which were dermatophytes and closely related fungi: Chrysosporium state of Arthroderma tuberculatum, C. asperatum, C. georgii, C. indicum, C. keratinophilum, C. pseudomerdarium, C. queenslandicum, Chrysosporium state of Thielavia sepedonium, C. tropicum, Microsporum cookei, M. gypseum, Myceliophthora anamorph of Corynascus novoguineensis, M. vellerea and Trichophyton terrestre. 26 species of cycloheximide resistant fungi were collected and these included members of Acremonium, Aspergillus, Alternaria, Chaetomium, Cladosporium, Cunninghamella, Emericella, Fusarium, Geotrichum, Penicillium and others.

Arthrodermataceae↗

PubMed1980

Rhizosphere fungi of five plants in Egypt.

75 species which belong to 25 genera were collected during this investigation. All of these fungi were previously isolated from Egyptian soils and other sources. The total count and the number of genera and species in the rhizosphere soil of the 5 plants were regularly higher than in non-rhizosphere soil. The composition of the rhizosphere fungus flora was considerably influenced by the type and the age of the plant. The most prevalent fungi in the rhizosphere of the test plants after 45, 90, and 150 days were as follows: in Helianthus annuus, Stachybotrys atra and Aspergillus niger; in Chrysanthemum coronarium, Cladosporium herbarum, A. sydowii and Penicillium funiculosum; in Nigella sativa, Fusarium moniliforme and A. sydowii; in Datura innoxia, A. fumigatus and A. terreus; in Hyoscyamus muticus, C. herbarum and A. sydowii; and in soil, P. funiculosum, A. terreus and A. niger. The counts of total fungi and most of the common fungal species, except in the case of Datura innoxia, reached their maxima after 90 days and sharply declined after 150 days.

Egypt↗

PubMed1981

Studies on air-borne fungi at Qena. II. Diurnal fluctuations.

The air-borne fungi displayed diurnal periodicities. The total count of fungi exhibited double-peaked pattern, one at 6 a.m. and the other at 18 p.m. (the higher). Aspergillus diurnal activities were almost parallel to those of total fungi. Cladosporium showed on main peak at 18 p.m. Penicillium and Alternaria displayed some pattern of diurnal activity and their maxima were observed.

Air Microbiology↗

PubMed1995

Alternative methods of preparing whole-cell DNA from fungi for dot-blot, restriction analysis, and colony filter hybridization.

There is a large and increasing number of methods for preparing whole-cell DNA from fungi. Modifications have evolved for two reasons. This first is to simplify the protocol as much as possible to allow processing of large sample numbers, in some cases for very specific uses, e.g., dot-blots. The second is to increase the quality of the DNA. Most preparations are contaminated with varying amounts of polysaccharides and unknown wall contaminants that can inhibit subsequent restriction or ligation. The extent of contamination varies with the species, the individual isolate, and at least in Neurospora, with the method or extent of growth. This paper offers three new methods. The first is a simplified procedure for isolating denatured DNAs from filamentous fungi for dot-blot analysis. The second is a rapid method for isolating DNAs from large numbers of small- to medium-scale cultures of filamentous fungi. These preparations are sufficiently pure for a variety of enzymatic reactions. The third is a nonenzymatic method for yeast colony filter hybridization that is simple, inexpensive, and efficient and results in uniform signals for a variety of species.

Aspergillus↗

PubMed1994

Macrophage response to viruses, protozoa, and fungi: secretory and cellular activities induced in resting unprimed bone marrow-derived mononuclear phagocytes.

The secretory (tumor necrosis factor, TNF-alpha; nitrite) and cellular response (mitochondrial respiration, TNF-alpha-independent tumoricidal activity) of a pure, lymphocyte-free population of resting, unprimed rat bone marrow-derived mononuclear phagocytes (BMM phi) to direct interaction with viruses, protozoa, and fungi was assessed and compared with that triggered by bacterial agents and interferon-gamma (IFN-gamma). Viruses (herpes simplex, vaccinia, poliomyelitis, vesicular stomatitis, lymphocytic choriomeningitis, Sendai), protozoa (Trypanosoma brucei, Giardia lamblia), and fungi (Penicillium, Trichosporon, Fusarium, Rhizopus, Aspergillus, Geotrichum species) affected primarily the secretion of TNF-alpha and mitochondrial respiration of BMM phi; their effects on the secretion of nitrite and on tumoricidal activity were at best marginal. Collectively, the macrophage response to viruses, protozoa, and fungi was less varied and less marked than that to bacterial agents (intact organisms, peptidoglycan, lipoteichoic acid, lipopolysaccharide) and IFN-gamma.

Animals↗

PubMed2002

Airborne fungi and endotoxin concentrations in different areas within textile plants in Taiwan: a 3-year study.

Bioaerosols have been found in many occupational environments, including animal feeding houses, poultry slaughter houses, and cotton textile plants. This study was undertaken to examine a group of bioaerosols, the endotoxins, fungi, and bacteria, inside two textile factories over 3 years in Taiwan, where temperature and humidity are usually high year-round. Airborne dust was collected with filter cassettes attached to personal pumps and analyzed by the Kinetic Limulus Assay with Resistant-parallel-line Estimation. For fungi and bacteria determination, samples were collected using duplicated single-stage impactors, and organisms were counted after incubation. Endotoxin was the major contamination inside textile plants. Indoor levels were substantially higher than outdoor concentrations by 63- to 278-fold. The average values of fungi inside and outside the plants were not significantly different. Airborne bacteria levels were higher inside the plants as compared to outside. The carding sites, using only cotton, had extremely high endotoxin levels, greater than those at sites using synthetic fibers. Cotton, may be a major source of endotoxin contamination. In conclusion, the early stage of textile processing seems to generate high endotoxin and bacteria contamination. Priorities should be given to occupational hygiene programs for workers at various sites in textile plants.

Aerosols↗

PubMedDate not supplied

Use of molecular cytology to study the structure and biology of phytopathogenic and mycorrhizal fungi.

Molecular cytology, that is, the in situ localization of selected molecules by labeling with lectins, enzymes, and antibodies, has made a major contribution to our understanding of the structure and biology of fungi and is increasingly becoming an integral part of molecular, genetic, and biochemical studies. The review presented in this article concentrates on recent advances in the application of molecular cytology in investigations of the structure and biology of phytopathogenic and mycorrhizal fungi and of the molecular basis of their infection of host plants. The review examines details of the structure and molecular composition of fungal cell walls revealed by lectin, enzyme, and antibody labeling. Molecular composition is shown to vary according to taxonomic relationships and as a reflection of differences in cell type, location within the cell, and within thickness of the wall. Sites of synthesis and secretion of wall components are also detected through the labeling of selected molecules. In situ labeling of cytoskeletal elements, microtubules and actin microfilaments, has provided much information on the role of these elements in tip growth, organelle distribution, and spore development. Molecular cytology, particularly through the generation of monoclonal antibodies, has also revealed new and exciting information on specialized infection structures formed by fungi in order to infect host plants. The sites of storage and secretion of adhesives and degradative enzymes have been documented, as have surface specializations that may be associated with avoidance of detection by the host. In addition, in situ labeling with enzymes and antibodies has aided studies of the host defense response, including mechanisms of detection of fungal elicitor molecules, changes in wall composition, and the secretion of antifungal compounds. With the increasing production of monoclonal antibodies to fungal molecules, molecular cytology promises to continue to make an important contribution to our understanding of fungal cell structure and function in the future.

Cell Adhesion↗