Search PubMed⌕ Search

SEARCH · Search PubMed

Results for “Spatial Distribution”

Search indexed PubMed citations on genomics, clinical trials, systematic reviews and public health. Explore titles, authors and supplied subject terms, then open the PubMed record.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 685 records · Page 38Linked to original sources
PubMed2004

Landscape features and spatial distribution of adult northern corn rootworm (Coleoptera: Chrysomelidae) in the South Dakota areawide management site.

The northern corn rootworm, Diabrotica barberi Smith & Lawrence (Coleoptera: Chrysomelidae), creates economic and environmental concerns in the Corn Belt. To supplement the population control tactics of the Areawide Pest Management Program in Brookings, SD, geographic information systems were used from 1997 to 2001 to examine the spatial relationships between D. barberi population dynamics and habitat structure, soil texture, and elevation. Using the inverse distance weighted interpolation technique, D. barberi population density maps were created from georeferenced emergence and postemergence traps placed in maize, Zea mays L., fields. For each year, these maps were overlaid with vegetation, soil, and elevation maps to search for quantitative relationships between pest numbers and landscape structure. Through visual interpretation and correlation analysis, shifts in landscape structure, such as size, number, and arrangement of patches were shown to associate with D. barberi population abundance and distribution in varying degrees. D. barberi were found in greater proportions than expected on loam and silty clay loam soils and on elevations between 500 and 509 m. An understanding of the interactions between D. barberi population dynamics and landscape variables provides information to pest managers, which can be used to identify patterns in the landscape that promote high insect population density patches to improve pest management strategies.

Animals↗
PubMedDate not supplied

The spatial distribution of enteric bacteria in the Jordan River-Lake Kinneret contact zone.

Lake Kinneret, in the north of Israel, is the only freshwater body in the country. It supports many activities, including recreation, tourism, and a commercial fishing industry, but its prime function is to supply water to other parts of the country. Consequently, maintaining a high water quality of the lake is of prime importance. The major part (some 90%) of the annual runoff of water enters Lake Kinneret from the north via the Jordan River during the autumn-winter floods. During this period, the river carries sediments, toxic agricultural chemicals, and allochthonous organisms, including pathogenic bacteria, into the lake. The Jordan River-Lake Kinneret contact zone is characterized by a rapid transformation from a riverine to a lacustrine water mass within 700 m from the river mouth, with very high spatial gradients of practically all hydrodynamic, hydrophysical, hydrochemical, and microbiological parameters. Previous measurements have shown that the distribution of enteric bacteria in the river-lake contact zone is related to the attenuation of river current flows. The aim of this study was to determine whether the change in the number of enteric bacteria (fecal coliforms, Escherichia coli, and Klebsiella spp.) in the water of the River Jordan-Lake Kinneret contact zone was due to sedimentation or to dilution. The data were then utilized to build a conceptual model explaining the distribution of biological pollutants (bacteria) in the river-lake contact zone of a shallow tropical lake, using the microbial communities of the River Jordan-Lake Kinneret contact zone, as an example.

Enterobacteriaceae↗
PubMed1999

Spatial distribution of venous gas emboli in the lungs.

The distribution of gaseous pulmonary emboli is presumed to be determined by their buoyancy. We hypothesized that regional pulmonary blood flow may also influence their distribution. Therefore, pulmonary blood flow was measured in supine, anesthetized dogs with use of 15-microm fluorescent microspheres at baseline and during N(2) embolism. The animals were killed, and the lungs were excised, air-dried, and diced into approximately 2-cm(3) pieces with weights and spatial coordinates recorded. Embolism was defined as a >10% flow decrease relative to baseline. Vertically, the incidence of embolism increased substantially by 6 +/- 1% per additional centimeter in height compared with baseline (P = 0.0003). Embolism also increased radially by 3 +/- 1%/cm from the hilum (P = 0.002). There was a weaker but statistically significant increase in embolism to pieces with greater baseline flow, 9 +/- 2% for every 1. 0 increase in relative baseline flow (P = 0.008). We conclude that the distribution of gaseous emboli is influenced by buoyancy and flow dynamics within the pulmonary vasculature.

Air Pressure↗
PubMed2005

[Spatial distribution pattern and fractal analysis of Larix chinensis populations in Qinling Mountain].

In this paper, the fractal characters of Larix chinensis populations in Qinling Mountain were studied by contiguous grid quadrate sampling method and by boxing-counting dimension and information dimension. The results showed that the high boxing-counting dimension (1.8087) and information dimension (1.7931) reflected a higher spatial occupational degree of L. chinensis populations. Judged by the dispersal index and Morisita's pattern index, L. chinensis populations clumped at three different age stages (0-25, 25-50 and over 50 years). From Greig-Smiths' mean variance analysis, the figure of pattern scale showed that L. chinensis populations clumped in 128 m2 and 512 m2, and the different age groups clumped in different scales. The pattern intensities decreased with increasing age, and tended to reduce with increasing area when detected by Kershaw's PI index. The spatial pattern characters of L. chinensis populations may be their responses to environmental factors.

China↗
PubMed2003

Spatial distribution of the messenger ribonucleic acid and protein of the nuclear receptor coactivator, amplified in breast cancer-3, in mice.

Transcriptional activities of nuclear receptors are modulated by coactivators and corepressors. The amplified in breast cancer-3 protein (AIB3, also known as ASC-2, RAP250, PRIP, TRBP, and NCR) is a newly identified nuclear receptor coactivator that is amplified and overexpressed in breast cancers. This study aims to investigate the spatial expression of AIB3 mRNA and protein in various murine tissues. Quantitative measurements revealed that the concentrations of AIB3 mRNA differ substantially in different tissues in a descending order from the following: testis, brain, thymus, white fat, pituitary, ovary, adrenal gland, lung, uterus, kidney, heart, skeletal muscle, liver, and virgin mammary gland. The AIB3 mRNA level in the testis is 165-fold higher than that in the virgin mammary gland. Specific antiserum was generated and used to map the distribution of AIB3 protein by immunohistochemistry. Although AIB3 protein was detected in many tissues, the AIB3 immunoreactivities varied significantly from cell type to cell type. High levels of AIB3 immunoreactivity were observed in hormone target cells including the testicular Sertoli cells, follicular granulosa cells, and epithelial cells of the prostate, uterus, mammary gland, and kidney tubules. Medium and low levels of AIB3 immunoreactivities were also detected in a variety of other cell types. These results demonstrate that AIB3 mRNA and protein are preferentially expressed in specific cell types, suggesting that AIB3 may support the function of nuclear receptors in a cell type-specific manner.

Adrenal Glands↗
PubMed1999

Spatial distribution of respiratory activity in Pseudomonas putida 54G biofilms degrading volatile organic compounds (VOC).

All over the world, Microbial systems are used to clean soils, waters and air streams that have been contaminated with volatile organic compounds (VOC). Information about the structure and function of the microbes that metabolize these contaminants can be gained by studying these microbial systems. Here we describe the spatial patterns of respiratory activity in Pseudomonas putida 54G aerobic biofilms degrading two VOC, toluene and ethanol. Oxygen concentration profiles within the biofilm were measured using microsensors. These profiles are thought to be most accurate reflection of the structure and function of aerobic microbial biofilms. The degrading process certainly imposed a structural and functional patterns on the microbial biofilm community growing at the expense of the VOC substrate. Cryosectioning coupled with the staining of biofilm samples confirmed a high respiratory activity near the substratum, that decreased towards the biofilm/fluid interface. The accumulation of inactive cells in the outer biofilm layer protects the inner biofilm from high concentrations of toxic compounds and also limits the degradation rate. This stratification phenomenon appeared to be a general pattern for P. putida 54G biofilms degrading VOC.

Biofilms↗
PubMed2005

Spatial distribution and function of sterol regulatory element-binding protein 1a and 2 homo- and heterodimers by in vivo two-photon imaging and spectroscopy fluorescence resonance energy transfer.

Sterol regulatory element-binding proteins (SREBPs) are a subfamily of basic helix-loop-helix-leucine zipper proteins that regulate lipid metabolism. We show novel evidence of the in vivo occurrence and subnuclear spatial localization of both exogenously expressed SREBP-1a and -2 homodimers and heterodimers obtained by two-photon imaging and spectroscopy fluorescence resonance energy transfer. SREBP-1a homodimers localize diffusely in the nucleus, whereas SREBP-2 homodimers and the SREBP-1a/SREBP-2 heterodimer localize predominantly to nuclear speckles or foci, with some cells showing a diffuse pattern. We also used tethered SREBP dimers to demonstrate that both homo- and heterodimeric SREBPs activate transcription in vivo. Ultrastructural analysis revealed that the punctate foci containing SREBP-2 are electron-dense nuclear bodies, similar or identical to structures containing the promyelocyte (PML) protein. Immunofluorescence studies suggest that a dynamic interplay exists between PML, as well as another component of the PML-containing nuclear body, SUMO-1, and SREBP-2 within these nuclear structures. These findings provide new insight into the overall process of transcriptional activation mediated by the SREBP family.

CCAAT-Enhancer-Binding Proteins↗
PubMed2005

Postnatal changes in the spatial distributions of substance P and neurokinin-1 receptor in the trigeminal subnucleus caudalis of mice.

Nociceptive afferent signals from the orofacial area are transmitted to the trigeminal subnucleus caudalis (Vc) through the release of glutamate and/or substance P (SP). Although nociceptive transmission and/or modulating mechanisms are known to develop during the postnatal period, the specific developmental changes in nociception and/or modulation remain unclear. The present study examined postnatal changes in the spatial relationship between SP and its receptor, the NK1 receptor (NK1R), in the mouse Vc by immunohistochemistry and quantitative analysis. The medulla was removed from C57BL/6N mice (1, 2, 4, and 8 weeks of age) after perfusion and fixation, and cut horizontally at a thickness of 40 mum. The relative densities of SP- and NK1R-immunoreactive areas and their changes with age were assessed statistically. One- and 2-week-old mice showed relatively high densities of SP-positive structures in the marginal layer (Mar) and the deep part of the magnocellular layer (Mag). The SP distribution in the superficial Vc remained unchanged, but the density in the deep Mag gradually decreased with age, resulting in a complete loss after postnatal week 4. The NK1R-immunoreactivity exhibited a similar distribution pattern to that of SP, but the pattern remained unchanged during the postnatal period. Double-immunofluorescence staining for SP and NK1R demonstrated only moderate direct contact of SP-positive structures with NK1R in the superficial area. These separate distributions and the postnatal changes in SP and NK1R suggest the possibility of another nociceptive afferent transmission mechanism, that is, volume transmission, in the Vc other than synapse-mediated transmission.

Aging↗
PubMed1998

Temporal and spatial distributions of directional counterface motion at the acetabular bearing surface in total hip arthroplasty.

The motions of counterface articulation against the bearing surface of the acetabular liner strongly influence polyethylene wear debris production in contemporary total hip arthroplasty. However, the available body of relevant articular force and motion information is largely confined to resultant load excursions measured relative to instrumented femoral components, and/or to global angular motions (flexion, adduction, endorotation) of the joint. Analytical frameworks are here developed to transform such information into temporal and spatial variations of the resultant load and of the local counterface sliding velocity relative to an ordered set of discrete locations (e.g., finite element nodes) on the acetabular bearing surface. Whole-duty-cycle time histories of acetabular resultant load and counterface velocity distributions are presented for two important practical situations: human level walking gait, and a 23 degrees biaxial rocking hip simulation machine. The local counterface motions occurring in the simulator are characterized by higher velocities, smoother motion patterns, and wider directional variation than those occurring in human gait.

Acetabulum↗
PubMed1999

Spatial distribution of extractable organohalogens in northern pink shrimp in the north Atlantic.

Extractable organohalogens (EOX) are organic compounds that contain chlorine, bromine and/or iodine, which can be separated from the matrix by liquid/liquid or liquid/solid extraction. A combination of instrumental neutron activation analysis (INAA) and solvent extraction methods has been developed for the determination of EOX from the shrimp Pandalus borealis. Levels of EOX were evaluated for spatial trends for shrimp caught in several areas off the Labrador coast, off the coast of Nova Scotia, and off the coast of Maine. Muscle contained 1.09-6.05 micrograms EOCl/g tissue and 105-498 micrograms extractable organochlorine (EOCl)/g lipid; 0.0607-0.288 microgram extractable organobromine (EOB)r/g tissue and 4.74-10.5 micrograms EOBr/g lipid; and 0.014-0.048 microgram extractable organoiodine (EOI)/g tissue and 1.03-1.76 micrograms EOI/g lipid, respectively. The levels of EOCl in roe were 1.60-12.34 micrograms/g tissue and 39.0-146 micrograms/g lipid. In roe, the EOBr levels were 0.707-1.03 micrograms/g tissue and 6.96-13.5 micrograms/g lipid; and EOI levels were 0.123-0.349 microgram/g tissue and 1.42-4.11 micrograms/g lipid. The EOCl, EOBr, and EOI levels in roe increased noticeably from north to south along the coast of Labrador. Samples taken from the coast of Maine and from Canso Hole were typically higher in EOCl levels than those taken from Labrador. The results for EOBr and EOI were in the same range as those from Labrador.

Animals↗
PubMed2006

Spatial distribution of forest fires and controlling factors in Andhra Pradesh, India using SPOT satellite datasets.

Fires are one of the major causes of forest disturbance and destruction in several dry deciduous forests of southern India. In this study, we use remote sensing data sets in conjunction with topographic, vegetation, climate and socioeconomic factors for determining the potential causes of forest fires in Andhra Pradesh, India. Spatial patterns in fire characteristics were analyzed using SPOT satellite remote sensing datasets. We then used nineteen different metrics in concurrence with fire count datasets in a robust statistical framework to arrive at a predictive model that best explained the variation in fire counts across diverse geographical and climatic gradients. Results suggested that, of all the states in India, fires in Andhra Pradesh constituted nearly 13.53% of total fires. District wise estimates of fire counts for Andhra Pradesh suggested that, Adilabad, Cuddapah, Kurnool, Prakasham and Mehbubnagar had relatively highest number of fires compared to others. Results from statistical analysis suggested that of the nineteen parameters, population density, demand of metabolic energy (DME), compound topographic index, slope, aspect, average temperature of the warmest quarter (ATWQ) along with literacy rate explained 61.1% of total variation in fire datasets. Among these, DME and literacy rate were found to be negative predictors of forest fires. In overall, this study represents the first statewide effort that evaluated the causative factors of fire at district level using biophysical and socioeconomic datasets. Results from this study identify important biophysical and socioeconomic factors for assessing 'forest fire danger' in the study area. Our results also identify potential 'hotspots' of fire risk, where fire protection measures can be taken in advance. Further this study also demonstrate the usefulness of best-subset regression approach integrated with GIS, as an effective method to assess 'where and when' forest fires will most likely occur.

Conservation of Natural Resources↗
PubMed2003

Spatial distribution of polychlorinated naphthalenes in air over the Great Lakes and air-water gas exchange in Lake Ontario.

High-volume air samples were collected during research cruises of Lake Superior in August 1996 and May 1997 and of Lake Ontario (North America) in July and September 1998 and June 2000 and analyzed for polychlorinated naphthalenes (PCNs). Levels of tetra- to octachloronaphthalene (sigmaPCN) varied spatially, with mean values (+/-SD) of 1.78 +/- 0.74 and 1.46 +/- 1.07 pg m(-3) for Lake Superior in 1996 and 1997, respectively, and of 5.53 +/- 2.19 and 5.60 +/- 2.24 pg m(-3) for Lake Ontario in 1998 and 2000, respectively. Evaporative sources were predominant, although combustion marker congeners such as tetrachloronaphthalenes 44 and 29 and pentachloronaphthalene 54 were present in most samples and were enhanced relative to technical PCN mixtures. The sigmaPCN concentrations were higher in Lake Ontario samples collected in the western half of the lake and when winds were from the west. Greater proportions of the population and industrial areas are located around the western part of Lake Ontario. Water-air fugacity ratios, calculated from air and water samples collected in June 2000, indicate that the trichloronaphthalenes are volatilizing from Lake Ontario, whereas the tetrachloronaphthalenes are close to equilibrium and the net deposition of tetrachloronaphthalenes can occur when the urban air plume influences levels over the lake.

Chlorine Compounds↗
PubMed2002

[Spatial distribution of Ascaris lumbricoides infection].

OBJECTIVE: To estimate risk areas for Ascaris lumbricoides parasitic overload, using geoprocessing and geostatistic methods of analysis. METHODS: A coproparasitologic and domiciliary survey was conducted in 19 selected census districts of the state of Rio de Janeiro, Brazil. A sample of 1,664 children aged between 1 - 9 years was selected and plotted in their own home' centroid. Geostatistics techniques allowed spatial exploratory analysis, variographic study, and ordinary kriging. Student t-test, odds ratio and confidence intervals were used in the statistical analysis. RESULTS: A prevalence of 27.5% was found for A. lumbricoides. Household income, housewife's education level and peridomiciliary conditions were identified as significantly associated factors to the occurrence of ascariasis. An isotropic spherical semivariogram model with 150-m reach, contribution of 0.45 and nugget effect of 0.55 was employed in ordinary kriging. CONCLUSIONS: Peridomiciliary impact on ascariasis is confirmed by a spatial continuity of 150 m. Disease occurrence could be estimated in the study area and a risk map elaborated using ordinary kriging.

Animals↗
PubMed2005

Role of a spatial distribution of IP3 receptors in the Ca2+ dynamics of the Xenopus embryo at the mid-blastula transition stage.

Periodic calcium activity correlates temporally with the onset of gene expression in the embryo, suggesting a causal relation between these two events. Calcium transients are elicited by the action of fibroblast growth factor (FGF) through the activation of phospholipase C. In this work, we present a reaction-diffusion model that extends our previous results on the generation of calcium oscillations for a single and two coupled blastomere cells to a meridian of the Xenopus embryo at the mid-blastula transition. In the model, all cells are subject to the same amount of FGF and contain the same concentration of intracellular components, except for the amount of IP(3) receptors (IP3R). A bell-shaped distribution of IP3R produces the correct shape of the calcium transients experimentally observed in the Xenopus blastula at stage 8 (mid-blastula transition stage). The model is also capable of predicting period and amplitude values close to the experimental values. In our model, calcium transients induce spatially localized ERK periodic transients that could activate specific nuclear genes, allowing for the regional differentiation of the cells in the zone under the influence of the calcium signal.

Animals↗
PubMed2003

Bacteriophage MS2: molecular weight and spatial distribution of the protein and RNA components by small-angle neutron scattering and virus counting.

Small-angle neutron scattering (SANS) has been used to extend the structural characterization of the MS2 phage by examining its physical characteristics in solution. Specifically, the contrast variation technique was employed to determine the molecular weight of the individual components of the MS2 virion (protein shell and genomic RNA) and the spatial relationship of the genomic RNA to its protein shell. A consequence of this work was to evaluate a novel particle counting instrument, the integrated virus detection system (IVDS) that, in combination with SANS, has the potential to provide rapid quantitative physical characterization of unidentified viruses and phage.

Electrophoresis, Polyacrylamide Gel↗
PubMedDate not supplied

Spatial distribution of responses to simple and complex sounds in the primary auditory cortex.

The basic functional organization of the cat primary auditory cortex is discussed as it is revealed by electrophysiological studies of the distribution of elementary receptive field (RF) parameters. RFs of cortical neurons have been shown to vary considerably from neuron to neuron; additionally, specific RF properties vary independently. Furthermore, some of the RF properties are nonhomogeneously distributed across the auditory cortex and can be interpreted as forming "maps" that represent specific stimulus information in a topographic way. Accordingly, the functional organization of the primary auditory cortex is interpreted as a series of superimposed independent parameter maps. The consequences of such a layout for the spatial and temporal coding of pure tones and speech sounds is illustrated and ramifications for the interpretation of far-field event-related potentials are discussed.

Animals↗
PubMed2001

Kir subfamily in frog retina: specific spatial distribution of Kir 6.1 in glial (Müller) cells.

We show by immunocytochemistry in frog retina that most members of the Kir subfamily are expressed in specific neuronal compartments. However, Kir 6.1, the pore-forming subunit of K(ATP) channels, is expressed exclusively in glial Müller cells. Müller cell endfeet display strong Kir 6.1 immunolabel throughout the retina, whereas the somata are labeled only in the retinal periphery. This spatial pattern is similar to that of Kir 4.1, of the ratio of inward to outward K+ currents, and of spermine/spermidine immunoreactivity. We suggest that the co-expression of Kir 4.1 and Kir 6.1 subunits may enable the cells to maintain their high K+ conductance and hyperpolarized membrane potentials both at high ATP levels (Kir 4.1) and during ATP deficiency (Kir 6.1).

Animals↗
PubMed2003

[Spatial distribution of leptospirosis in Rio Grande do Sul, Brazil: recovering the ecology of ecological studies].

Leptospirosis is an endemic disease in the State of Rio Grande do Sul, Brazil, and presents a broad diversity of exposure routes, reservoirs, etiological agents, and clinical features. The main objective of this work is to identify transmission areas and possible ecological components of leptospirosis transmission. This was accomplished through the aggregation of epidemiological data into spatial units that represent the State's socio-environmental diversity. The 1,274 confirmed leptospirosis cases that occurred in 2001 were georeferenced in the counties of residence. The county maps were overlaid on environmental units characterizing land use, altitude, and river basins. Incidence rates for each environmental class were calculated, along with their statistical significance, through GIS aggregation operations. The highest incidence rates were verified in coastal sedimentary areas with low altitude and predominantly agricultural land use. In these areas, most of the cases were associated with irrigated farming. The results suggest the existence of favorable ecological characteristics for leptospirosis transmission in places involving proliferation of peri-domiciliary rodents and intensive agricultural production. The article discusses the effects of data aggregation into environmental units, as well as strategies to control the endemic in the State.

Animals↗