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[From rings to segregation. Mexico City, 1950-1987].

The author discusses different methods of urban analysis, using the example of Mexico City, Mexico. "In this work two outlines are used: a concentric one that reflects the city's expansion and a segregated one that sees the 'different cities' within. We analyze the commercial occupation of central areas and the growth due to the expansion of the periphery from 1950 to 1986. In both processes, the massive expulsion of the inhabitants appears, firstly as an effect and secondly as a cause. This fact serves as an argument to explore certain proposals in a prospective dimension. In the technical [spatial] analysis we generally avoid the design of the city itself. Here we approach some design ideas without forgetting their social dimension." (SUMMARY IN ENG)

Americas↗

Spatial correlations of mapped malaria rates with environmental factors in Belize, Central America.

BACKGROUND: The purposes of this study were to map overall malaria incidence rates from 1989 through 1999 for villages in Belize; to assess the seasonal distribution of malaria incidence by region; and to correlate malaria incidence rates with vegetation cover and rivers in villages, using geographic information system technology.Malaria information on 156 villages was obtained from an electronic database maintained by the Belize National Malaria Control Program. Average annual malaria incidence rates per 1000 population over 10 years were calculated for villages using the 1991 population census as a denominator. Malaria incidence rates were integrated with vegetation cover from a 1995 vegetation map, and with river data from a digital data set. RESULTS: Mapping malaria incidence over the 10-year period in the study villages indicated the existence of a spatial pattern: the southern and western areas of Belize had consistently higher rates of malaria than northern areas. Examination of the seasonal distribution of malaria incidence by month over 10 years indicated that a statistically significant difference existed among districts and among months (p < 0.05). Spatial analysis of malaria incidence rates and of vegetation in Belize showed villages with high malaria rates having more broadleaf hill forests, agricultural land, and wetland vegetation types (i.e. SWF-seasonally waterlogged fire-induced shrubland of the plains). Statistical and spatial analyses of malaria incidence and of river distributions in Belize determined the high 10 percentile malaria incidence villages in western and southern Belize to have more rivers within two kilometers of the center of a village and a statistically significant correlation between proximity to rivers and villages (Spearman's gamma = -0.23; p < 0.05), especially in Stann Creek District (Spearman's gamma = -0.82; p < 0.05). CONCLUSIONS: Examination of the distribution of malaria during 10 years indicated transmission varied among geographic areas and among seasons. Additional studies are needed to examine, in more detail, the association between environmental and meteorological factors and malaria transmission. Furthermore, the role of An. darlingi in malaria transmission in Stann Creek needs further study since, of the three main vectors in Belize, An. darlingi has been found strongly associated with rivers.

Journal Article↗

Geographic dynamics of viral encephalitis in Thailand.

Viral encephalitis (VE) continues to be a major disease in Asia, causing serious illness which may result in death or have neurological sequelae. This study involves an ecological analysis of the climatic, geographic and seasonal patterns of clinically reported VE in Thailand from 1993 to 1998 to investigate regional and seasonal differences in disease incidence. Three thousand eight hundred and twenty nine cases of VE were clinically diagnosed nationwide during the study period by the Thai Ministry of Public Health. Spearman rank correlations of temporal, spatial and geographic variables with disease incidence were performed. The monthly incidence of VE correlated significantly with seasonal changes in temperature, relative humidity and rainfall in the north-northeast region of Thailand (P < 0.001), whereas incidence in the south-central region correlated only with relative humidity (P = 0.003). Spatial analysis revealed a positive correlation of disease with elevation (P < 0.001), and negative correlations with rice-field cover (P < 0.001), agricultural land-use (P < 0.001) and temperature (P = 0.004) in the north-northeast region. No significant spatial correlation was identified in the south-central region. The spatial distribution of VE suggests that etiologic variations may be responsible, in part, for the geographic patterns of disease. Active etiologic surveillance is necessary in a variety of geographic settings in order to provide physicians with information necessary for disease prevention and clinical management.

Age Distribution↗

Modeling urban growth effects on surface runoff with the integration of remote sensing and GIS.

A methodology is developed to relate urban growth studies to distributed hydrological modeling using an integrated approach of remote sensing and GIS. This linkage is possible because both studies share land-use and land-cover data. Landsat Thematic Mapper data are utilized to detect urban land-cover changes. GIS analyses are then conducted to examine the changing spatial patterns of urban growth. The integration of remote sensing and GIS is applied to automate the estimation of surface runoff based on the Soil Conservation Service model. Impacts of urban growth on surface runoff and the rainfall-runoff relationship are examined by linking the two modeling results with spatial analysis techniques. This methodology is applied to the Zhujiang Delta of southern China, where dramatic urban growth has occurred over the past two decades, and the rampant urban growth has created severe problems in water resources management. The results revealed a notably uneven spatial pattern of urban growth and an increase of 8.10 mm in annual runoff depth during the 1989-1997 period. An area that experienced more urban growth had a greater potential for increasing annual surface runoff. Highly urbanized areas were more prone to flooding. Urbanization lowered potential maximum storage, and thus increased runoff coefficient values.

Automation↗

Genesis of a spatial pattern in the cellular slime mold Polysphondylium pallidum.

The branches in Polysphondylium pallidum whorls are arranged in a radial pattern. We have used a pattern-specific monoclonal antibody to study branch formation and characterize the origin of this pattern. A quantitative spatial analysis of antibody staining reveals that the branching pattern arises from a random distribution. This distribution passes through a series of intermediate stages to yield a radial prepattern. The origins and evolution of this prepattern are satisfactorily accounted for by models that produce spatial patterns by short-range autocatalytic and longer-range inhibitory forces.

Antibodies, Fungal↗

Plutonium contamination in soils in open space and residential areas near Rocky Flats, Colorado.

Spatial analysis of the 240Pu:239Pu isotopic ratio of 42 soil samples collected around Rocky Flats Plant near Golden, Colorado, was conducted to assess the effect of Rocky Flats Plant activity on the soil environment. Two probability maps that quantified the uncertainty of the spatial distribution of plutonium isotopic ratios were constructed using the sequential Gaussian simulation technique (sGs). Assuming a plutonium isotopic ratio range of 0.152+/-0.003 to 0.169+/-0.009 is characteristic to global fallout in Colorado, and a mean value of 0.155 is representative for the Rocky Flats Plant area, the main findings of the current work were (1) the areas northwest and southwest of Rocky Flats Plant exhibited a plutonium ratio > or = 0.155, thus were minimally impacted by the plant activity; (2) the study area east of Rocky Flats Plant (approximately 120 km2) exhibited a plutonium isotopic ratio < or = 0.155, which is a definitive indicator of Rocky Flats Plant-derived plutonium; and (3) inventory calculations across the study area exhibited large standard error of estimates. These errors were originated from the high variability in plutonium activity over a small sampling scale and the uncertainty in the global fallout isotopic ratio. Using the mean simulated estimates of plutonium isotopic ratio, coupled with plutonium activity measured at 11 soil pits and additional plutonium information published elsewhere, the plutonium loading on the open space and residential areas amounted to 111.2 GBq, with a standard error of estimate of 50.8 GBq.

Algorithms↗

Mapping for prevention: GIS models for directing childhood lead poisoning prevention programs.

Environmental threats to children's health--especially low-level lead exposure--are complex and multifaceted; consequently, mitigation of these threats has proven costly and insufficient and has produced economic and racial disparities in exposure among populations. Policy makers, public health officials, child advocates, and others currently lack the appropriate infrastructure to evaluate children's risk and exposure potential across a broad range of risks. Unable to identify where the highest risk of exposure occurs, children's environmental health programs remain mitigative instead of preventive. In this article we use geographic information system spatial analysis of data from blood lead screening, county tax assessors, and the U.S. Census to predict statistically based lead exposure risk levels mapped at the individual tax parcel unit in six counties in North Carolina. The resulting model uses weighted risk factors to spatially locate modeled exposure zones, thus highlighting critical areas for targeted intervention. The methods presented here hold promise for application and extension to the other 94 North Carolina counties and nationally, as well as to other environmental health risks.

Child Welfare↗

Using survival analysis to study spatial point patterns in geographical epidemiology.

The spatial K-function has become a well accepted method of investigating whether significant clustering can be detected in spatial point patterns. Unlike nearest neighbor-based methods, the K-function approach has the advantage of exploring spatial pattern across a range of spatial scales. However, K-functions still have a number of drawbacks. For instance, although K-functions are based on inter-event distances, they only use a count of the number of point events within successive distance bands. This represents data aggregation and information loss. Secondly, and perhaps more significantly, K-functions are based on a cumulative count of point events with distance. This feature raises the possibility that the investigation of pattern at different scales is compromised by the dependency of any one count to previous counts. This paper proposes a new approach to the analysis of spatial point patterns based upon survival analysis. Although typically used in the temporal domain, there is no reason why survival analysis cannot be applied to any positively-valued, continuous variable as well as time. In this paper, survival analysis is applied to the inter-event distance measures of bivariate spatial point patterns to investigate the 'random labeling' hypothesis. It is shown, through both a controlled data situation and empirical epidemiological applications, that such an approach may be a very useful complement to K-function analysis.

Accidents, Traffic↗

Human brain areas involved in the analysis of auditory movement.

This work tests the hypothesis that a network of areas involving bilateral premotor cortex and right parietal cortex subserves the analysis of sound movement. The components of this network have been examined at the level of individual subjects in a study where 720 fMRI scans were acquired per subject. Additionally, the effect of movement direction was investigated by varying this property systematically. Linear sound ramps that are perceived as movement toward one side of the head or the other were used in an experiment in which the principal contrast was between movement, and a stationary control stimulus made up of identical component interaural phase and amplitude cues. In a group analysis, the network of bifrontal and right parietal areas suggested by previous work was confirmed. The frontal activation included both dorsal premotor activity in the region of the frontal eye fields and discrete ventral premotor activation in an area corresponding to primate areas for multimodal spatial analysis and motor planning. The right parietal activation included both superior and inferior parietal cortex. Analysis of the individual data showed a similar pattern of activation in each subject, with the greatest variability within the right parietal area. The pattern of activation did not vary when the direction of movement was varied, suggesting that both directions of movement are represented in the network we have demonstrated.

Acoustic Stimulation↗

[The disorder of space analysis as a key to understanding anosognosia in right-sided cerebral infarct].

The dextrocerebral stroke is often underestimated as a result of its deficits--in contrary to the left cerebral stroke with the aphasia--because the patient's neglect of the plegic side is transferred to the therapist. A key to understanding this is the hypothesis that the anosognosia results in a loss of spatial analysis. After a survey of the different functions of the left and right hemispheres the author demonstrates the symptoms, diagnosis and therapeutic prognoses. The therapy needs to be continued for several months. In addition, the patient's social environment is important.

Aged↗

Spatial distribution of schistosomiasis foci on Itamaracá Island, Pernambuco, Brazil.

Acute cases of schistosomiasis have been found on the coastal area of Pernambuco, Brazil, due to environmental disturbances and disorderly occupation of the urban areas. This study identifies and spatially marks the main foci of the snail host species, Biomphalaria glabrata on Itamaracá Island. The chaotic occupation of the beach resorts has favoured the emergence of transmission foci, thus exposing residents and tourists to the risk of infection. A database covering five years of epidemiological investigation on snails infected by Schistosoma mansoni in the island was produced with information from the geographic positioning of the foci, number of snails collected, number of snails tested positive, and their infection rate. The spatial position of the foci were recorded through the Global Positioning System (GPS), and the geographical coordinates were imported by AutoCad. The software packages ArcView and Spring were used for data processing and spatial analysis. AutoCad 2000 was used to plot the pairs of coordinates obtained from GPS. Between 1998 and 2002 5009 snails, of which 12.2% were positive for S. mansoni, were collected in Forte Beach. A total of 27 foci and areas of environmental risk were identified and spatially analyzed allowing the identification of the areas exposed to varying degrees of risk.

Animals↗

[A study on family communication space (Part II)--A study on spatial utilization for, and familial consciousness of, family communication].

Part II, based on the findings of Part I, tries to identify family Communication by delving into how it is actually practiced in view of spatial conditions within a house, and familial consciousness. Specific spatial conditions have been sampled of the housing of students at women's junior colleges, and how their family members mutually Communicate and evaluate it has been analyzed. Their views of "family" have also been examined. The findings are as follows: 1) The number of rooms, and the width of the room(s) used for family Communication are major determining factors in separating family Communication from other living activities. 2) The above separation is affected by whether family Communication is practiced in a Japanese-style room or a Western-style one. 3) The perceptual difference of the consent of "family" among a family members principally determines how they engage in family Communication and how they evaluate it. It has proved to be necessary to consider, for a spatial analysis, what kind of posture each member takes when mutually Communicating, seeking comfort and relaxation at home.

Adult↗

Determining data independence on a digitized membrane in three dimensions.

A method for determining whether structures distributed along a cell's membrane represent a random spatial distribution is presented in this paper. Two three-dimensional (3-D) images are acquired from one cell by wide-field digital imaging of cells which have been labeled with two different fluorescent antibodies. Prior to spatial analysis, a constrained regularized least squares restoration of the images is performed. This is followed by registration via fiducial markers (dual-labeled beads). A deformable model is then used to map data near the surface to the surface. Finally, each resulting data set is analyzed to determine whether it is spatially random. To do this, we generalize the test for complete spatial randomness of points in a plane, to test voxels distributed along a voxelized membrane in three dimensions. We also test whether the distribution of one protein is independent of the distribution of a second protein. The method is applied to compare the distribution of the protein kinase C to that of vinculin. Vinculin is a protein which anchors intracellular filaments to the cell's plasma membrane. It is also used as a (sparse) membrane marker for the deformable model. Protein kinase C facilitates molecular motors inside the cell. These may be associated with actin and myosin filaments.

Actin Cytoskeleton↗

Hierarchical modeling and other spatial analyses in prostate cancer incidence data.

BACKGROUND: State central cancer registries are often asked to respond to questions about the spatial distribution of cancer cases. Spatial analysis methods and technology are evolving rapidly, and can be a considerable challenge to registries that do not have staff with training in this area. The purpose of this article is to describe a general methodological approach that potentially might be a starting point for many cancer registry spatial analyses at the county level. METHODS: Prostate cancer incident cases (N=31,159) from the Louisiana Tumor Registry from 1988 to 1999 were used for illustrative purposes. To explore spatio-temporal patterns, analyses focused on four time periods, each 3 years in length: 1998-1990, 1991-1993, 1994-1996, and 1997-1999. For each time period, race-specific (white and black), direct age-adjusted incidence rates and indirect standardized incidence ratios (SIRs) were calculated, smoothed using Bayesian methods, and assessed for evidence of spatial autocorrelation using global and local Moran's I. Hierarchical generalized linear models (HGLM) were fitted to identify significant covariates. Clusters of elevated and lower rates were identified using a spatial scan statistic (SaTScan). RESULTS: Temporal trends in SIRs in both race groups were consistent with the introduction of prostate specific antigen (PSA) testing in Louisiana during the late 1980s and early 1990s, but possibly with a lag in black males. Clusters of lower than expected values were observed for white males in the central (p=0.001) and southeastern coastal areas (p=0.001), and to a greater extent for black males in the central (p=0.001), southwestern and southeastern coastal parishes (p=0.001). CONCLUSIONS: Mapping disease occurrence by time period is an effective way to explore spatio-temporal patterns. HGLM models and software are available to control for covariates and for unstructured and spatially structured variability that may confound spatial variability patterns.

Adult↗

Synaptic vesicles in rat hippocampal boutons recycle to different pools in a use-dependent fashion.

Efficient vesicle membrane recycling at presynaptic terminals is pivotal for preventing depletion and maintaining high firing rates in neuronal networks. We used a new approach, based on the combination of spectrally different optical probes, to investigate how stimulation determines the fate of synaptic vesicles after endocytosis. We found that in the small central synapses of rat hippocampal neurones low frequency stimulation (40 action potentials at 2 Hz) targets vesicles preferentially to vesicle pools that were kinetically faster. Vesicles taken up during endocytosis triggered by high frequency stimulation (400 action potentials, 20 Hz) were also placed in the back of the release queue. We performed a spatial analysis of the recycled vesicles in living hippocampal boutons using two spectrally different FM-dyes (FM1-43 and FM5-95). By using these consecutively, vesicles endocytosed by either stimulation protocol were labelled with a different colour. This revealed that the kinetic arrangement was also reflected in the spatial organization of vesicles within the bouton. Next, we identified the postsynaptic site of the active zone by transfecting the neurones with postsynaptic density protein PSD-95-CFP. The data from these triple colour experiments suggest that retrieval after low frequency stimulation keeps vesicles in a more confined region closer to the active zone as identified by PSD-95-CFP expression at the postsynaptic site.

Action Potentials↗

The role of the assessment of spatial variation and clustering in environmental surveillance of birth defects.

This paper discusses the role of small area spatial analysis of birth defects in environmental surveillance. Two approaches are reviewed: (1) the investigation of identified geographically localised potential environmental hazards, and (2) the detection of clustering. Examples are given where these 2 types of investigation have been used in the follow-up of individual clusters. Finally, it is argued that environmental surveillance, incorporating the 2 groups of spatial methods, should become a part of public health practice on both proactive and reactive basis.

Bias↗

Improvement of hybrid yield by advanced backcross QTL analysis in elite maize.

We applied an advanced backcross breeding strategy to identify quantitative trait loci (QTLs) of agronomic importance in a cross between two elite inbreds of maize, RD6502 (Mo17-type recurrent parent) and RD3013 (Iodent donor parent). Two hundred and four BC(2) families were scored at 106 SSR, 15 AFLP, and 38 Heartbreaker (MITE) loci. BC(2) testcrosses (TC) with B73 were phenotyped at six locations in the Midwest and N.Y. We detected four grain yield, six grain moisture, and three plant height QTLs at which the RD3013 allele had a favorable effect ( p < 0.05). All four yield QTLs were selected as target introgressions in the development of BC(3)TC families. As predicted by BC(2)TC analysis, BC(3)TC entries containing introgressions at yld3.1 and yld10.1 significantly outperformed non-carrier entries by 11.1% (15.6 bu/A at one location) and 6.7% (7.1 bu/A averaged across two locations), respectively, in replicated Midwestern trials ( p < 0.05). Detection of yld10.1 effects in the BC(2)TC by spatial analysis (i.e., incomplete block, response surface, autoregressive, moving average or autoregressive moving average), but not by conventional single point analysis or interval mapping, indicated the utility of local environmental control for QTL mapping in unreplicated maize progeny. This work demonstrated that the advanced backcross QTL method can be applied to identify and manipulate useful QTLs in heterotic inbreds of elite maize. Genetic gains by this approach can be coupled with the maintenance and selection of favorable epistatic gene complexes by traditional hybrid breeding for maize improvement.

Journal Article↗

Computational methods for comparison of large genomic and proteomic datasets reveal protein markers of metastatic cancer.

Large-scale genomic and proteomic analysis has provided a wealth of information on biologically relevant systems, and the ability to analyze this information is crucial to uncovering important biological relationships. However, it has proven difficult to compare large datasets from different sources due to different gene and protein identifiers assigned by individual laboratories and database systems. Here, we describe the design of a fully automated blast program (BlastPro) that facilitates rapid comparison of large protein-protein, nucleotide--nucleotide, or nucleotide--protein datasets from numerous, independent studies. Using this system, we compared several published genomic and proteomic databases for proteins that are upregulated in highly motile, metastatic tumor cells. Analysis of five independent studies comprised of greater than 1 x 10(6) genomic sequences and greater than 1,000 proteins revealed that the cytoskeletal-associated protein alpha-actinin is increased at both the mRNA and protein level in metastatic breast, prostate, and skin cancer cells. Interestingly, spatial analysis of alpha-actinin expression revealed that it is amplified 8-fold in the leading pseudopodium compared to the cell body compartment of migrating cells. These findings indicate that amplification of alpha-actinin and its localization to the leading pseudopodium are potential biomarkers of cancer progression to a more metastatic phenotype. Together, our results demonstrate that the BlastPro system can be used to compare large genomic and proteomic datasets to reveal important biological relationships including those associated with cancer progression.

Actinin↗