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Characterization of the last step of lignin biosynthesis in Zinnia elegans suspension cell cultures.

The last step of lignin biosynthesis in Zinnia elegans suspension cell cultures (SCCs) catalyzed by peroxidase (ZePrx) has been characterized. The k(3) values shown by ZePrx for the three monolignols revealed that sinapyl alcohol was the best substrate, and were proportional to their oxido/reduction potentials, signifying that these reactions are driven exclusively by redox thermodynamic forces. Feeding experiments demonstrate that cell wall lignification in SCCs is controlled by the rate of supply of H(2)O(2). The results also showed that sites for monolignol beta-O-4 cross-coupling in cell walls may be saturated, suggesting that the growth of the lineal lignin macromolecule is not infinite.

Asteraceae↗

Characteristics of novel lignin peroxidases produced by white-rot fungus Phanerochaete sordida YK-624.

We characterized a lignin peroxidase (YK-LiP2) isolated from shaking culture inoculated with the white-rot fungus Phanerochaete sordida YK-624. The YK-LiP2 enzyme was identified and purified to homogeneity by anion-exchange chromatography and gel permeation chromatography. The molecular weight of YK-LiP2 was approximately 45 kDa, and its absorption spectrum was almost the same as that of the LiP (Pc-LiP) from P. chrysosporium. Steady-state kinetics of veratryl alcohol (VA) oxidation by YK-LiP2 revealed an ordered bi-bi ping-pong mechanism, although the Pc-LiP oxidation of ferrocytochrome c obeys peroxidase ping-pong kinetics rather than ordered bi-bi ping-pong kinetics. Degradation of dimeric lignin model compounds by YK-LiP2 was more effective than that by Pc-LiP. Moreover, YK-LiP2 and YK-LiP1, which was previously isolated from static culture inoculated with P. sordida YK-624, oxidized VA under a higher concentration of hydrogen peroxide (>2.5 mM) although Pc-LiP could not oxidize VA in the presence of 2.5 mM hydrogen peroxide.

Benzyl Alcohols↗

Adsorption of lead and cadmium ions in aqueous solutions onto modified lignin from alkali glycerol delignication.

Adsorptions of toxic metal ions (Pb(II) and Cd(II)) onto modified lignin from beech and poplar woods by alkali glycerol delignification are presented in this paper. The material exhibits good adsorption capacity and the adsorption data follow the Langmuir model. The maximum adsorption capacities are 8.2-9.0 and 6.7-7.5 mg/g of the modified lignin for Pb(II) and Cd(II), respectively. The maximum adsorption percentage is 95.8 for Pb(II) for 4 h at 330 K and is 95.0 for Cd(II) for 10 h at 290 K. The adsorption of both the metal ions increased with increasing temperature indicating endothermic nature of the adsorption process. The maximum adsorption percentages of Pb(II) and Cd(II) ions decrease with time till 48 and 42 h and then again increase slightly with time. The adsorption of both heavy metal ions increases with pH. The adsorption of Pb(II) ions reached a maximum at a 5.0 value of pH.

Adsorption↗

The effect of a catecholate chelator as a redox agent in Fenton-based reactions on degradation of lignin-model substrates and on COD removal from effluent of an ECF kraft pulp mill.

We evaluated the effect of a catecholate chelator as a redox agent in Fenton-based reactions (known as chelator-mediated Fenton reaction-CMFR), in the presence of three different transition metals ions (Fe(2+), Fe(3+) and Cu(2+)) by determining the oxidative capability of CMFR towards lignin-model substrates. The potential application of mediated Fenton-based reactions as a novel process to treat pulp mill effluent was evaluated and monitored by chemical oxygen demand (COD) and total phenol removals from a combination of the effluents generated during an ECF bleaching stage. The catecholate chelator 3,4-dihydroxiphenilacetic acid (DOPAC) reduced both Fe(3+) and Cu(2+), in addition, the maximum Cu(2+) reduction activity was reached in a shorter time than for Fe(3+) reduction, however, the highest metal reduction activity was observed with Fe(3+). When DOPAC was added to Fenton-based reactions (Fe(3+)/H(2)O(2), Fe(2+)/H(2)O(2), Cu(2+)/H(2)O(2)) an increase in oxidative activities of these reactions were found as they resulted in great degradation improvement of the lignin-model substrates azure B, phenol red and syringaldazine. The same increase in oxidative capability of Fenton-based reactions in the presence of DOPAC was observed after effluent treatment, expressed by the increase in COD removal, namely, an increase in the range of about 70% in COD removal when Fe(2+) or Fe(3+) was the catalytic metal and about 25% for Cu(2+). However CMFR lead to an increase in total phenol content. As COD removal by CMFR system using Fe(3+) and Fe(2+) was not significantly different and that Fe(3+) ions promoted lesser increase in total phenol content, Fe(3+) was chosen for experimental optimization. At optimum conditions, 75% of COD and 30% of total phenol removal were achieved.

3,4-Dihydroxyphenylacetic Acid↗

Simulation of 13C nuclear magnetic resonance spectra of lignin compounds using principal component analysis and artificial neural networks.

Theoretical models relating atom-based structural descriptors to 13C NMR chemical shifts were used to accurately simulate 13C NMR spectra of lignin model compounds (poly-substituted phenols). The structure-activity relationship (SAR) studies for 15 lignins using pattern recognition methods of principal component analysis (PCA) and artificial neural networks (ANNs) were performed in this work. The most important parameters affecting the 13C chemical shifts of different carbons were descriptors consisting of the charge density of the atoms at different distances from the center carbon. Among the large number of parameters, these descriptors were selected using PCA and were used as ANN input. The least square regression analyses of the results indicate correlation coefficient (R) values in excess of 0.983 for the total data set.

Carbon Isotopes↗

Component analysis of the fluorescence spectra of a lignin model compound.

In order to test whether lignin fluorescence originates from discrete fluorophores, fluorescence emission spectra of the lignin model dehydrogenative polymer (DHP) were analyzed by the band deconvolution method and time-resolved analysis of both the excitation and emission spectra. Two series of 22 fluorescence emission spectra of DHP in chloroform/methanol (3:1, v/v) solution, and as a solid suspension in water, were deconvoluted into three fluorescence and one Raman Gaussian components. Emission spectra were obtained by stepwise variation of the excitation wavelength from 360 to 465 nm. Deconvolution was performed by nonlinear fitting of all three Gaussian parameters: area, width and position. Position of all components in a series was treated as a random variable and its approximate probability distribution (APD) calculated from a series of histograms with increasing number of abscissa intervals. A five peak multimodal APD profile was obtained for both series of DHP emission spectra. The mean fluorescence lifetime varied with wavelength both in the emission and the excitation decay-associated spectra (DAS), where four kinetic components were resolved. The shapes of the excitation spectra of the four components were quite different and gradually shifted bathochromically. The multicomponent nature of the DHP emission spectra along with the changes in the mean fluorescence lifetime and the form of the excitation DAS of the four components give evidence of the heterogeneous origin of fluorescent species emitting in the visible.

Chloroform↗

Peroxidases, lignin and anatomy during in vitro and ex vitro rooting of gardenia (Gardenia jasminoides Ellis) microshoots.

In vitro and ex vitro rooting of gardenia (Gardenia jasminoides Ellis) microshoots with or without indolic-3-butyric acid (IBA) was studied in order to improve acclimatization of microplants after root formation and transplantation. Peroxidase (POD) activity and isoforms, lignin content and anatomical observations were evaluated in the course of the three interdependent phases (induction, initiation and expression) of microshoot rooting. Microshoots treated or not treated with IBA achieved high rooting percentages both in vitro and ex vitro. At the end of the 2-week acclimatization period, the percentage of surviving microplants ranged from 80% to 100%, for in vitro and ex vitro rooted microshoots, respectively. Microshoots rooted in vitro and ex vitro showed a relationship between rooting and POD activity but in a different time course. It appeared that root formation occurred after the microshoots had reached and passed a peak of maximum enzyme activity. In all treatments, electrophoretic analysis (native PAGE) of PODs revealed the appearance of one anionic and three cationic POD isoforms (C(1), C(3) and C(4)). An additional cationic POD isoform (C(2)) appeared only in the ex vitro rooting. The lignin content was similar in microshoots rooted both in vitro and ex vitro. The sequential anatomical changes during the rooting process were similar in both in vitro and ex vitro rooting treatments. In the case of in vitro rooting, pith cells had vacuoles entirely filled with a dark substance, while in the case of ex vitro rooting, pith cells contained many amyloplasts. The origin of the adventitious roots, in both rooting conditions, was located in the cambial ring. Roots with organized tissue systems emerged from the microshoot stem 10-14 days after the root induction treatments; on day 10 for rooting in vitro, while a 4-day delay was noted in microshoots rooted ex vitro.

Acclimatization↗

Wheat cells accumulate a syringyl-rich lignin during the hypersensitive resistance response.

The stem rust fungus Puccinia graminis f.sp. tritici is an obligately biotrophic pathogen attacking wheat (Triticum aestivum). In compatible host/pathogen-interactions, the fungus participates in the host's metabolism by establishing functional haustoria in the susceptible plant cells. In highly resistant wheat cultivars, fungal attack is stopped by a hypersensitive response of penetrated host cells. This mechanism of programmed cell death of single plant cells is accompanied by the intracellular accumulation of material with UV-fluorescence typical of phenolic compounds. A similar reaction can be induced in healthy wheat leaves by the application of a rust-derived elicitor. We analysed the biochemical composition of this defense-induced phenolic material. Contents of total soluble and cell wall esterified and etherified phenolic acids were determined in rust-inoculated and elicitor-treated leaves of the fully susceptible wheat cultivar Prelude and its highly resistant, near-isogenic line Prelude-Sr5. While no resistance-related changes occured in any of these fractions, the lignin content as determined by the thioglycolic acid and the acetyl bromide methods increased after elicitor treatment. Nitrobenzene oxidation revealed that the entire increase can be explained by an increase in syringyl units only. These biochemical data were confirmed by fluorescence emission spectra analyses which indicated a defense-induced enrichment of syringyl lignin for cell wall samples both from elicitor-treated wheat leaves and single host cells undergoing a hypersensitive response upon fungal penetration.

Basidiomycota↗

Peroxidase activity can dictate the in vitro lignin dehydrogenative polymer structure.

The objective of this study was to assess the influence of the peroxidase/coniferyl alcohol (CA) ratio on the dehydrogenation polymer (DHP) synthesis. The soluble and unsoluble fractions of horseradish peroxidase (HRP)-catalyzed CA dehydrogenation mixtures were recovered in various proportions, depending on the polymerization mode (Zutropf ZT/Zulauf ZL) and HRP/CA ratio (1.6-1100purpurogallin U mmol(-1)). The ZL mode yielded 0-57%/initial CA of unsoluble condensed DHPs (thioacidolysis yields <200micromolg(-1)) with a proportion of uncondensed CA end groups increasing with the HRP/CA ratio (7.2-55.5%/total uncondensed CA). Systematically lower polymer yields (0-49%/initial CA) were obtained for the ZT mode. In that mode, a negative correlation was established between the beta-O-4 content (thioacidolysis yields: 222-660micromolg(-1)) and the HRP/CA ratio. In both modes, decreasing the HRP/CA ratio below 18Ummol(-1) favoured an end-wise polymerization process evidenced by the occurrence of tri-, tetra- and pentamers involving at least one beta-O-4 bond. At low ratio, the unsoluble ZT DHP was found to better approximate natural lignins than DHPs previously synthesized with traditional methods. Besides its possible implication in lignin biosynthesis, peroxidase activity is a crucial parameter accounting for the structural variations of in vitro DHPs.

Benzocycloheptenes↗

Removal of water pollutants with activated carbons prepared from H3PO4 activation of lignin from kraft black liquors.

Activated carbons with a high BET surface area and a well-developed porosity have been prepared from pyrolysis of H3PO4-impregnated lignin precipitated from kraft black liquors. Impregnation ratios within the range of 1-3 and activation temperatures of 623-873 K have been used, giving rise to carbons with different porous and surface chemical structure. Increasing the activation temperature and the impregnation ratio leads to a widening of the porous structure with a higher relative contribution of mesoporosity. The potential application of these carbons for the removal of water pollutants has been investigated by measuring their adsorption capacities for phenol, 2,4,5-trichlorophenol and Cr (VI) as representative of toxic contaminants found in industrial wastewaters. The results obtained compare well and even favorably with those reported in the literature for other activated carbons. An impregnation ratio and an activation temperature around 2 g H3PO4/g lignin and 700 K, respectively, are recommended as the best combination of operating conditions to prepare activated carbons for aqueous phase applications although at lower values of these two variables carbons with good adsorption capacities are also obtained.

Adsorption↗

The mediation of veratryl alcohol in oxidations promoted by lignin peroxidase: the lifetime of veratryl alcohol radical cation.

The kinetics of decay of veratryl alcohol radical cation, generated by cerium(IV) ammonium nitrate induced oxidation of veratryl alcohol, have been followed spectrophotometrically in a stopped-flow apparatus. In acidic aqueous acetonitrile the radical cation was found to decay by a first-order process, due to deprotonation from the alpha-carbon leading to an alpha-hydroxybenzyl radical with the rate constant of 17.1+/-0.5 s(-1). This value is in full agreement with those obtained by pulse radiolysis studies but much lower than the value (1.2x10(3) s(-1)) indirectly determined by EPR experiments. The implications of these results with respect to the possible role of veratryl alcohol as a mediator in the oxidative biodegradation of lignin catalysed by lignin peroxidase are discussed.

Benzyl Alcohols↗

Further study discounts role for singlet oxygen in fungal degradation of lignin model compounds.

This study reexamined our contention that singlet oxygen (1O2) plays a role in the fungal degradation of lignin (BBRC 102(1981)484). Cultures of Phanerochaete chrysosporium and a photochemical 1O2-generating system (riboflavin/light/O2) cleaved a lignin substructure model compound, 1,2-bis(4-methoxyphenyl)propane-1,3-diol (I), by indistinguishable mechanisms. However, the rate of cleavage of I in D2O was the same as in H2O in the photochemical 1O2-generating system, indicating that 1O2 was not involved. Furthermore, products formed from I in a chemical system for generating 1O2 (H2O2 + NaOCl) differed from those produced by cultures or the photochemical system. It is concluded that 1O2 is not responsible for cleavage of I or related compounds in the fungal cultures or in the photochemical system.

Chemical Phenomena↗

The poly(phenolic) domain of potato suberin: a non-lignin cell wall bio-polymer.

Suberized plant cell walls have three distinguishing features: (1) tissue specificity, (2) a poly(aliphatic) domain and (3) a unique, "lignin-like" poly(phenolic) domain. With respect to the latter, comparisons have often been made to lignin, but the unique phenolic composition of suberized cells yields a unique polymer better designated as a poly(phenolic) domain. Potato tubers that have been induced to suberize through wounding make an excellent model system with which the chemistry, biochemistry and macromolecular assembly of the suberin poly(phenolic) domain can be monitored. For example, wound healing potato tubers have been used to determine the unique hydroxycinnamic acid nature of its poly(phenolic) domain using specific carbon-13 labeling studies and specific chemical degradation techniques (e.g. thioacidolysis). Furthermore, a suberization-associated anionic peroxidase has been purified from suberizing potato tubers and subsequently shown to oxidize hydroxycinnamic acids (and their derivatives) in preference to monolignols, as well as yield an unique polymer in vitro. We have since extended these studies to begin analyzing the macromolecular assembly process leading to the deposition of this suberized tissue specific domain. To this end we have begun to describe an H(2)O(2)-generating system with NAD(P)H-dependent oxidase-like properties that is temporally associated with the formation of potato suberin poly(phenolics) during suberization. Herein we describe our progress to date.

Biopolymers↗

Lignification and lignin topochemistry - an ultrastructural view.

This review discuses the ultrastructural aspects of cell wall lignification and lignin topochemistry. Lignification results from the enzyme mediated polymerization of monolignols initiated by unknown factors (initiation sites) located at the corners of cells and in the middle lamella. Lignification results in the filling of pores within the carbohydrate matrix following a sequence from the outer regions of the wall towards the lumen. The amount and chemical characteristics of lignin vary across the cell wall, with the presence of reaction wood, and among cell types.

Cell Wall↗

Transcriptional control of lignin biosynthesis by tobacco LIM protein.

Lignin is a complex phenolic plant polymer that is essential for mechanical support, defense, and water transport in higher plants. The AC-rich motif, Pal-box is an important cis-acting element for gene expression in phenylpropanoid biosynthesis. We isolated a cDNA clone (Ntlim1) encoding a Pal-box binding protein by Southwestern screening. The deduced amino acid sequence of Ntlim1 is highly similar to members of the LIM protein family that contain a zinc finger motif. Moreover, Ntlim1 had a specific DNA-binding ability and transiently activated transcription of a beta-glucuronidase reporter gene driven by the Pal-box sequence. The results of transient expression assays with tobacco cultured cells showed that fusion proteins between GFP and Ntlim1 can enter nuclei. Transgenic tobacco plants with antisense Ntlim1 showed low levels of transcripts from some key phenylpropanoid pathway genes such as phenylalanine ammonia-lyase, hydroxycinnamate CoA ligase and cinnamyl alcohol dehydrogenase. Furthermore, a greater than 20% reduction in lignin content was observed in transgenic tobacco with antisense Ntlim1.

Amino Acid Sequence↗

Acidolysis and hot water extraction provide new insights into the composition of the induced "lignin-like" material from squash fruit.

Accumulation of "lignin-like" material (L-LM) by plant tissues in response to injury or disease has been observed in a wide variety of plant taxa. The most intensively studied L-LM is that produced by members of the Cucurbitaceae; this material is thought to be an unusual lignin rich in p-coumaryl alcohol derived subunits. Employing acidolysis we found the primary degradation product of L-LM from squash fruit was p-coumaryl aldehyde. These findings conflict with the current concept of L-LM, but would be consistent with L-LM being a polymer derived directly from p-coumaryl aldehyde or a gum containing this compound. Results of hot water extraction support the latter possibility. Further, we report on a simple TLC method useful for rapid qualitative characterization of acidolysis degradation products.

Chromatography, Thin Layer↗

Influence of pectins on the solubility and the molar mass distribution of dehydrogenative polymers (DHPs, lignin model compounds).

Dehydrogenation polymers (DHPs, lignin model compounds) were synthesized in the presence of increasing pectin concentrations using two different methods. The first method ('Zutropfverfahren', ZT) consists in the slow adding of monomers whereas in the second method ('Zulaufverfahren', ZL) all the reactants are added simultaneously. DHPs solubility increases with the pectin concentration in the ZT experiments and remains stable in the ZL experiments. Covalent bonds between pectin and DHP are formed during ZT polymerization resulting in lignin carbohydrate complex (LCC) which keeps the unbound DHPs in solution by the formation of aggregate or micelle-like structures. In contrast LCC are not formed during the ZL process which behave like the DHP reference. The ZT DHP molar masses increase observed is attributed to the reactivity of the high molar mass polymer solubilized by the LCC whereas ZL higher molar mass polymers are precipitated out of the solution and cannot react further.

Antidiarrheals↗

Southern blot screening for lignin peroxidase and aryl-alcohol oxidase genes in 30 fungal species.

Screening to detect genes encoding lignin peroxidase (LiP) and aryl-alcohol oxidase (AAO) has been carried out with 30 fungal strain using DNA probes from genes lpo of Phanerochaete chrysosporium (encoding LiP isoenzyme H8) and aao of Pleurotus eryngii. Evidence for the presence of genes closely related to lpo was found in Bjerkandera adusta, Fomes fomentarius, Ganoderma applanatum, Ganoderma australe, Lentinula degener, Peniophora gigantea, P. chrysosporium, Phanerochaete flavido-alba and Trametes tersicolor, whereas the gene aao was detected in Pleurotus species and B. adusta. The presence of both genes was only detected in B. adusta. These results suggest that different enzymatic system, formed by enzymes encoded by different genes, are responsible for lignin degradation by white-rot fungi.

Alcohol Oxidoreductases↗