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PubMed1995

Dynamics of polygenic variability under stabilizing selection, recombination, and drift.

We study the transient dynamics of the genotypic variance of an additive trait under stabilizing selection, recombination and random drift. We show how interaction of these factors determines the form and the rates of change of different components of the genotypic variance. Let Vg be the genic variance of the trait and CL be the contribution of linkage disequilibrium to the genotypic variance. We demonstrate that the dynamics of the system on the plane (Vg, CL) are typically characterized by a quick approach to a straight line with slow evolution along this line afterwards. We show that the number of loci, n, and the population size, N, affect the expected dynamics of Vg mainly through the ratio N/n. We use our analytical and numerical results in interpreting the published results of artificial stabilizing selection experiments. The analysis suggests that it is drift and not selection that most likely led to the reduction of genetic variability in most of these experiments. Even very strong stabilizing selection only slowly removes polygenic variability from populations.

Algorithms↗
PubMed2006

Failure investigation of soldered stainless steel orthodontic appliances exposed to artificial saliva.

UNLABELLED: Globally in the field of Dental Technology, soldering continues to be the prevailing joining technique for removable orthodontic appliances. The strength of the soldered joint, however, is a growing concern to dental technicians since the commonly employed silver solder undergoes accelerated corrosion and ultimately influences the success of orthodontic appliances intraorally. OBJECTIVE: The goal of this in vitro study was to determine the effects of exposure to artificial saliva on the mechanical strength of orthodontic silver-soldered stainless steel joints. METHODS: One hundred (control group n=20; aged group n=80) soldered specimens were exposed to varying exposure times in Fusayama's artificial saliva. Tensile failure loads of the control and aged groups were measured. Failure modes were evaluated by examining the exposed surfaces, solder microstructure and the fracture morphology using a combination of light microscopy, scanning electron microscopy (SEM) and energy dispersive spectroscopy (EDS). RESULTS: A marked decrease in tensile failure load of the joints was recorded after exposure to artificial saliva. Selective attack was identified on the aged solder surfaces, which was attributed to the micro-galvanic effect brought about by the preponderance of Cu-rich phases in the solder microstructure. The selective attack promoted decohesion at the solder/wire interface, thereby reducing the tensile failure load. SIGNIFICANCE: This study helped to elucidate that an association between exposure periods and microstructure of soldered orthodontic joints exists and that their combined effects positively influence the tensile strengths of orthodontic soldered joints.

Analysis of Variance↗
PubMed2003

The application of artificial neural networks for the selection of key thermoanalytical parameters in medicinal plants analysis.

In the present study three thermoanalytical methods: differential thermal analysis (DTA), thermogravimetric analysis (TGA), and derivative thermogravimetric analysis (DTG) were used to investigate the thermal behavior of medicinal plant raw materials. In order to describe DTA curve, designation of the onset T(i), and peak T(p), temperatures was required. In TGA the mass losses Delta(m), and in DTG the temperature range of peak DeltaT, peak temperature T(p), and peak height h, were recorded. All parameters were read for three stages of the thermal decomposition of plant samples which resulted in obtaining eighteen thermal variables for each sample. Some similarities in the course of thermal decomposition of the same plant organs were recognized, but complexity of the obtained data made it very difficult to determine if they could differentiate between medicinal plant materials and which of them encode the most valuable information about the studied herbals. In order to confirm the existence of any relations between the chemical composition of medicinal plants and their thermal decomposition and to find out which thermoanalytical variables or decomposition stages can be considered as the most significant in terms of their evaluation, it was decided to apply fully connected feed-forward artificial neural networks (ANN). Two different training algorithms were used to address the problem: back-propagation of error and conjugate gradient descent. To verify the results two-dimensional (2-D) Kohonen self-organizing feature maps (SOFMs) were employed. Two alternative datasets of thirteen key variables discriminating plant samples have been proposed.

Algorithms↗
PubMed1980

Effects of twinning on lactation and days open in Holsteins.

Effects of twinning on lactation and days open in Holsteins were studied from calving records compiled by member surveys of Eastern Artificial Insemination Cooperative. Records of cows with 305-day mature-equivalent records from the Northeast Dairy Records Processing Laboratory were grouped according to whether the twin calving was associated with dystocia. Records of each cow that had a twin calving were paired with records of a single-calving control herdmate. In the twin group of 175 cows associated with dystocia, twin pregnancy had no effect on production; milk and fat production in the lactation initiated by twinning was depressed (137 kg and 7 kg) although not significantly; and days open following twin calving was increased. In the twinning group of 367 cows with no dystocia at twinning, milk and fat production were depressed by 285 kg and 14 kg in the lactation initiated by the twinning. Days open after twinning were increased by about 22 days. These results indicate a negative economic effect of twinning on lactation performance in Holstein cattle. Increased rates of twinning via selection or artificial induction of twinning dairy cattle appear not to be desirable.

Animals↗
PubMed1986

Continuous external counterpressure during closed-chest resuscitation: a critical appraisal of the military antishock trouser garment and abdominal binder.

Blood flow during closed-chest CPR may result from variations in intrathoracic pressure rather than selective compression of the cardiac ventricles. During chest compression, the thoracic and abdominal cavities are subjected to positive pressure fluctuations. It has been suggested that compression of the abdomen may improve left heart outflow during CPR by limiting diaphragmatic movement or improving venous return. Abdominal compression has been performed experimentally with pneumatic abdominal binders and with the abdominal compartment of the conventional military antishock trouser (MAST) garment. The MAST garment might also improve cardiac output with CPR through an "autotransfusion" effect. In animal studies, MAST-augmented CPR has improved systolic pressures; it has not been shown to improve vital organ perfusion. In the only available clinical study, CPR with the MAST did not improve survival from prehospital cardiac arrest when compared with conventional CPR alone. If inflation of the MAST does produce blood displacement from the peripheral to the central venous circulation, such an effect may be detrimental in that the arteriovenous pressure gradients necessary for vital organ flow may be adversely affected. Inflation of the MAST during CPR may also adversely effect artificial ventilation. Selective abdominal binding also increases systolic pressures during CPR but does not improve subdiaphragmatic venous return. Although abdominal binding may increase common carotid flow, it has not been shown to improve cerebral or myocardial perfusion when compared with conventional CPR alone. These CPR adjunct techniques have not been shown to improve outcome from cardiac arrest and should remain experimental until further well-designed studies addressing regional vital organ flow and outcome of resuscitation are performed.

Abdomen↗
PubMed1989

Survival and ventilatory course of a regional cohort of very low birthweight (501-1500 gm) infants.

To minimize the selection bias inherent in reporting results gathered only in neonatal intensive care units, this study presents survival and respiratory course data on all 299 infants of birthweight 501 to 1500 gm liveborn to residents of the North Central Illinois Perinatal Region in 1985-1986. The survival rate was 86.8% (171 of 197) for infants between 1001 and 1500 gm, but only 35.3% (36 of 102) for infants weighing less than 1001 gm. In all, 207 infants (69.2%) survived. One hundred eighty-six infants (62.2%) required mechanical ventilation, and 122 (65.6%) ventilated infants survived. Seventy-five (40.3%) ventilated infants developed lung rupture and 54 (29%) developed chronic lung disease (CLD), as manifest by a supplemental oxygen requirement at 28 days of age. Lung rupture significantly predicted death in the first 7 days, the development of CLD, and fatal CLD. These data portray an accurate picture of the survival and ventilatory course of this group of babies because every member of the entire regional cohort is included.

Cohort Studies↗
PubMed1993

Yeast artificial chromosome fragmentation vectors that utilize URA3 selection.

Two fragmentation vectors, pSE1 and pSE2, were developed for targeting yeast artificial chromosomes (YACs) containing human genomic DNA. Ura- yeast cells containing YACs were selected with 5-fluoro-orotic acid. Fragmented YACs were subsequently generated by transformation to a Ura+ phenotype. Over 80% of the transformants contained YACs of reduced molecular size. These fragmented YACs will prove to be useful in mapping the region of human chromosomes covered by the parental YAC. Fragmentation utilizing URA3 transformation provides a method for producing YAC deletion sets from YACs contained in AB1380 and other ura3- yeast stains. Linkage of a neomycin resistance gene to the URA3 gene facilitates functional analysis of these YACs in eukaryotic cells.

Acyltransferases↗
PubMed1995

Physical mapping of the human and mouse MOG gene at the distal end of the MHC class Ib region.

Myelin/oligodendrocyte glycoprotein (MOG) is expressed specifically in the central nervous system (CNS) by myelinating glial cells, the oligodendrocytes. The external location of MOG on myelin sheaths and its late expression during myelinogenesis argue for a role of MOG in the completion of myelin and maintenance of its integrity. MOG is a target autoantigen in demyelinating diseases, such as experimental autoimmune encephalomyelitis (EAE) in animals and multiple sclerosis (MS) in humans. We previously located the gene encoding MOG to the major histocompatibility complex (MHC), both in human, by cytogenetics, and in mouse, by analysis of recombinants. To refine the position, we have now selected yeast artificial chromosome clones (YAC) which contain the MOG gene. Physical mapping of the human MOG and the mouse Mog genes by characterization of these YAC clones indicated that the gene is located at the distal end of the major histocompatibility complex (MHC) class Ib region in both species. The human MOG gene lies 60 kilobases (kb) telomeric to HLA-F in a head-to-head orientation; the mouse Mog gene lies 25 (kb) telomeric to H2-M5 in a tail-to-head orientation. These orthologous genes provide markers for comparative analysis of the evolution of the MHC in the two species. The physical mapping of MOG should facilitate analysis of its role in hereditary neurological diseases, and the YAC clones identified here will permit the identification of new genes in the region.

Animals↗
PubMed2006

Monooxygenase activity in methidathion resistant and susceptible populations of Amblyseius womersleyi (Acari: Phytoseiidae).

The purpose of this study was to evaluate the cytochrome P450-dependent monooxygenase activities in methidathion resistant and susceptible strains of Amblyseius womersleyi Schicha. Artificial laboratory selections for resistance and susceptibility to methidathion were performed in an organophosphate resistant strain of A. womersleyi (Kanaya strain). Selections for susceptibility were also performed in a susceptible strain of this predaceous mite (Ishigaki Strain). After the selection process, the LC(50) of methidathion for the selected strains of A. womersleyi were 816 mg/l (Kanaya R), 4.61 mg/l (Kanaya S) and 1.59 mg/l (Ishigaki S). The monooxygenase activities were determined biochemically by the O-deethylation of 7-ethoxycoumarin (7-EC). The monooxygenase activity in adult females of Kanaya R strain (51.1 pmol/30 min/mg protein) was 3.60- and 5.42-fold higher than the activity observed for Kanaya S and Ishigaki S strains, respectively. Significant correlation between monooxygenase activity and LC(50) (mg/l) of methidathion was observed analyzing 16 populations of A. womersleyi with different susceptibilities to methidathion. Monooxygenase activity was also evaluated in different life stages (egg, larva, protonymph, deutonymph and adult) of A. womersleyi. The lowest activity was observed for the larval stage, which presented the highest susceptibility to methidathion. Protonymph, deutonymph and adult presented the highest monooxygenase activities. These stages were the most tolerant to methidathion. Monooxygenase activities of the Kanaya R strain were higher than of the Kanaya S strain in all developmental stages. The present study can be helpful for the implementation of a program involving release of insecticide-resistant populations of A. womersleyi in the field. The monooxygenase activity determination is easier and quicker than the estimation of LC(50), requiring fewer mites.

Animals↗
PubMed2001

Identification of a deletion hotspot on distal mouse chromosome 4 by YAC fingerprinting.

Using repetitive elements as probes, genomic DNA fingerprints of four randomly selected yeast artificial chromosome (YAC) clones (two human and two mouse-derived YAC) were analyzed to determine the mutation level following X-ray exposure. Because the repetitive probes were derived from the mammalian host DNA, most of the fingerprint bands originated from the artificial chromosomes and not from the yeast genome. For none of the YAC clones was the mutation frequency elevated following X-ray exposure. However, for one mouse-derived YAC, the mutation level was unusually high (7%; 42 mutants of 607 clones analyzed), whereas for the other three YACs, the mutation level was nearly 0%. Surprisingly, 40 of the 42 mutations were deletions occurring only at three of the 20 mouse specific fingerprint bands. One of the frequently deleted fragments was cloned, sequenced and mapped to distal mouse chromosome 4, which has been repeatedly reported to be the most unstable region of the whole mouse genome, associated with various tumors. Deletion mapping of six YAC mutants revealed this fragment to be completely deleted in four YACs. In the other two mutants, recombination occurred within the fragment, in each case initiated at the same LINE-1 element. In conclusion, the presented YAC fingerprint is a useful tool for detecting and characterizing unstable regions in mammalian genomes.

Animals↗
PubMed2001

FISH analysis of replication and transcription of chromosome X loci: new approach for genetic analysis of Rett syndrome.

Differential replication staining using the 5-bromo-2'-deoxyuridine+Hoechst 33258 technique has been carried out on a series of 28 girls with Rett syndrome (RTT). The results indicated that regions Xq23 and Xq28 of inactive chromosome X could contain early replicating and, therefore, transcriptionally active loci in RTT. Interphase fluorescence in situ hybridization studies of replication timing, using chromosome X-specific genomic DNA probes, was applied to determine the loci with altered replication and transcription in RTT. Randomly selected P1 artificial chromosome (PAC) clones for Xp, Xcen and Xq were used. Two PAC clones from Xq28 (anonymous clone 24.23.0 and 671D9, containing MeCP2 locus) probably escape inactivation in late replicating chromosome X in some RTT patients. Therefore, region Xq28 could contain the genes escaping X inactivation and with expression from the human active and inactive X chromosomes. These results support the hypothesis proposing the disturbances in dosage compensation effect due to aberrant activation of genes in inactive chromosome X in RTT (bi-allelic expression instead of mono-allelic). Our results indicate that the normal allele of the MeCP2 gene could escape X inactivation and reduce the pathogenic effect of mutated allele in RTT.

Adolescent↗
PubMed2003

Glycidol-carbohydrate hybrids: a new family of DNA alkylating agents.

Novel and chiral glycidol-carbohydrate hybrids possessing an epoxy group as a DNA alkylating moiety were designed and synthesized. These artificial hybrids selectively alkylated DNA at the N-7 sites of the guanines and cleaved DNA without any additives. The binding ability of the glycidol was significantly enhanced by the attachment of the carbohydrate.

Alkylating Agents↗
PubMed2006

The impact of particle-bound cadmium on bioavailability and bioaccumulation: A pragmatic approach.

Studying the bioavailability of sediment-bound contaminants is complicated by many reasons, such as the variable composition of the particles, their temporal variations, the low levels of contaminant concentrations, their partitioning between diverse aqueous and particulate phases, and the variety of uptake routes that may involved with the biota. Therefore, simple and innovative methodologies should be tested as analogues for natural sediments. Among them, a diverse selection of artificial particles with well-defined surface properties, in the presence and absence of commercially available humic acids, has been proposed and used to investigate the bioavailability of several organic pollutants. For this work, this model was applied to investigate the uptake and accumulation of cadmium by the freshwater oligochaete Lumbriculus variegatus. The results showed that the uptake of the metal depended on the free dissolved Cd(II) species, while the contribution from the particles was negligible. Thus, the extent of cadmium bioaccumulated from each test system could be predicted as a function of the rate of absorption of the free dissolved Cd(II) species. These species were calculated either from the particle-water partition coefficients, or by using the MINEQL+ computer program. In general, the estimated accumulation levels were in good agreement with the experimental results.

Animals↗
PubMed2004

A novel FISH assay for SS18-SSX fusion type in synovial sarcoma.

Synovial sarcoma is a morphologically, clinically and genetically distinct entity that accounts for 5-10% of all soft tissue sarcomas. The t(X;18)(p11.2;q11.2) is the cytogenetic hallmark of synovial sarcoma and is present in more than 90% of the cases. It produces three types of fusion gene formed in part by SS18 from chromosome 18 and by SSX1, SSX2 or, rarely, SSX4 from the X chromosome. The SS18-SSX fusions do not seem to occur in other tumor types, and it has been shown that in synovial sarcoma a clear correlation exists between the type of fusion gene and histologic subtype and, more importantly, clinical outcome. Previous analyses regarding the type of fusion genes have been based on PCR amplification of the fusion transcript, requiring access to good-quality RNA. In order to obtain an alternative tool to diagnose and follow this malignancy, we developed a fluorescence in situ hybridization (FISH) assay that could distinguish between the two most common fusion genes, that is, SS18-SSX1 and SS18-SSX2. The specificity of the selected bacterial artificial chromosome clones used in the detection of these fusion genes, as well as the sensitivity of the analysis in metaphase and interphase cells, was examined in a series of 28 synovial sarcoma samples with known fusion gene status. In all samples, the type of fusion was correctly identified by FISH. Thus, the assay described here should be useful for clarifying unresolved chromosome markers and for identifying fusion gene status in samples from which RNA of sufficient quality for PCR could not be extracted.

Antigens, Neoplasm↗
PubMed1998

Cytogenetic localization of genetic markers on porcine chromosome 7q.

Four microsatellite markers (S0078, SWR1210, SW732, and SW304) taken from the linkage map of porcine chromosome 7 were assigned to the cytogenetic map of pig chromosome 7 by fluorescence in situ hybridization (FISH) analysis of selected yeast artificial chromosomes (YACs). These four new polymorphic cytogenetic markers provide additional anchor points for integrating the linkage and cytogenetic maps of chromosomal region 7q.

Animals↗
PubMed2000

Suicide attempt by pure citalopram overdose causing long-lasting severe sinus bradycardia, hypotension and syncopes: successful therapy with a temporary pacemaker.

In few cases, pure citalopram overdose at doses above 600 mg showed electro-cardiographic changes with prolonged QT intervals and sinus bradycardia gradually resolving within 12-24 hours after intoxication. We report on a 32-year-old patient with borderline personality disorder (BPD) who ingested a total of 800 mg citalopram to attempt suicide due to an interpersonal disappointment. She developed severe sinus bradycardia with a minimal pulse rate of 41/min within about 4 hours after intoxication lasting up to six days during intensive care unit (ICU) treatment. Further, hypotension and syncopes occurred. No QT interval prolongations were recorded. To our knowledge, this is the first case report of pure citalopram overdose-induced long-lasting sinus bradycardia associated with severe hypotension and intermittent syncopes that required therapy with a temporary pacemaker.

Adult↗
PubMed1996

Evidence that phospholipase D mediates ADP ribosylation factor-dependent formation of Golgi coated vesicles.

Formation of coatomer-coated vesicles from Golgi-enriched membranes requires the activation of a small GTP-binding protein, ADP ribosylation factor (ARF). ARF is also an efficacious activator of phospholipase D (PLD), an activity that is relatively abundant on Golgi-enriched membranes. It has been proposed that ARF, which is recruited onto membranes from cytosolic pools, acts directly to promote coatomer binding and is in a 3:1 stoichiometry with coatomer on coated vesicles. We present evidence that cytosolic ARF is not necessary for initiating coat assembly on Golgi membranes from cell lines with high constitutive PLD activity. Conditions are also described under which ARF is at most a minor component relative to coatomer in coated vesicles from all cell lines tested, including Chinese hamster ovary cells. Formation of coated vesicles was sensitive to ethanol at concentrations that inhibit the production of phosphatidic acid (PA) by PLD. When PA was produced in Golgi membranes by an exogenous bacterial PLD, rather than with ARF and endogenous PLD, coatomer bound to Golgi membranes. Purified coatomer also bound selectively to artificial lipid vesicles that contained PA and phosphatidylinositol (4,5)-bisphosphate (PIP2). We propose that activation of PLD and the subsequent production of PA are key early events for the formation of coatomer-coated vesicles.

ADP-Ribosylation Factors↗
PubMed2005

HER2-mediated internalization of a targeted prodrug cytotoxic conjugate is dependent on the valency of the targeting ligand.

HER2 is a validated therapeutic target for cancer. There are no natural ligands, but monoclonal antibodies and peptides that bind HER2 act as artificial ligands, selectively affecting HER2-overexpressing tumors. One reported mechanism for this effect is receptor downregulation, but the expected correlation of ligand-dependent HER2 internalization and tumor inhibition remain poorly characterized. Moreover, HER2 ligands have limited therapeutic efficacy and often they require adjuvant treatment with the chemotherapeutic Taxol. Here, we generated a series of HER2 ligands (Anti-HER2/neu peptide ligands, AHNPmonovalent and AHNPbivalent) with different valency and correlated their internalization-promoting ability to biological potency. Since AHNPbivalent (but not AHNPmonovalent) induces rapid receptor internalization, we exploited this feature to deliver cytotoxic conjugates coupling AHNPbivalent and Taxol (Taxol . AHNPbivalent). The prodrug conjugate releases Taxol after receptor-mediated internalization, and cytotoxicity can be used as a marker of internalization. Taxol . AHNPbivalent is significantly more cytotoxic than free Taxol + free AHNPbivalent. Hence, the Taxol x AHNP(bivalent) prodrug binds to HER2, induces receptor internalization and downregulation, and the subsequent release of free Taxol inside the targeted cell results in synergistic toxicity, The effect is selective towards HER2- expressing cells. This work links HER2 receptor internalization and growth arrest, and the chemical conjugation strategy may yield improved and HER2 selective therapeutics.

Animals↗