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PubMed2005

Induction of B- to Z-DNA transition by copper and zinc complexes with C(15) substituted macrocyclic pentaaza ligands.

The new macrocyclic ligand 15-fluoro-15-methyl-1,4,7,10,13-pentaazacyclohexadecan-14,16-dione (2) was synthesised and its crystal structure determined together with the ones of the known analogues of 2, 15-fluoro-1,4,7,10,13-pentaazacyclohexadecan-14,16-dione (1) and 15,15-difluoro-1,4,7,10,13-pentaazacyclohexadecan-14,16-dione (3). The binding behaviour of all three ligands to copper and zinc was studied in the solid state. They can bind to the metal centre by either triple coordination (N3) with all secondary amines or after double deprotonation of the two amides with all five nitrogen atoms (N5). The N5 coordination mode is favoured by the presence of one or two fluorine substituents at the C(15) position and by a high pH in the case of aqueous solutions. Circular dichroism titrations of poly d(GC) with the metal complexes showed that only 4 and 5, that is the copper complexes of 1 and 2, induced a complete B- to Z-DNA transition. The degree of cooperativity of the transition was found to be 3.4 and 7.3 for 4 and 5 respectively. As a possible hypothesis to explain this difference, the additional methyl group in 5 compared with 4 may be involved in a hydrophobic interaction with the DNA. Ligand 2, the copper complex 6 of the bis fluoro substituted ligand 3, and the zinc complex 7 of ligand 1 did not induce any change in the direction of Z-DNA. In the case of 6, the CD spectrum of the DNA actually showed no change at all, indicating that the complex was even not interacting with the B form of DNA. Therefore it is assumed that the bis fluoro substitution is causing the complex to be in the neutral N5 coordination mode at the experimental conditions of pH 7. The electrostatic contribution together with the shielding effect of the ligand might explain the absence of any interaction with the DNA.

Aza Compounds↗
PubMed2005

Selection of the cis and trans phosph(III)azane macrocycles [{P(mu-NtBu)}2(1-Y-2-NH-C6H4)]2(Y=O, S).

The 1 : 1 reactions of [ClP(mu-NtBu)]2 with the difunctional aromatic amines 1,2-1-YH-2-NH2-C6H4 in the presence of Et3N give the dimeric phosph(III)azane macrocycles [{P(mu-NtBu)2(1-Y-2-HN-C6H4)]2, predominantly as the cis isomer in the case of Y=O (1.cis) and as the trans isomer for Y=S (2.trans). Model M.O. calculations suggest that the selection of the cis and trans isomers is not thermodynamically controlled. The alternative isomers 1.trans and 2.cis are generated exclusively by the deprotonation of the model intermediates [(1-Y-2-NH2-C6H4)P(mu-NtBu)]2[Y=O (3), S (4)] with nBuLi followed by cyclisation with [ClP(mu-NtBu)]2. The solid-state structures of 1.cis/trans(50 : 50), 2.cis, 3 and 4 are reported.

Crystallography, X-Ray↗
PubMed2005

Cyclen based bis-macrocyclic ligands as phosphates receptors. A potentiometric and NMR study.

The host-guest interaction between orthophosphate, pyrophosphate and triphosphate anions and four cyclen based bis-macrocycles ligands possessing ortho-(BOC), meta-(BMC), para-xylenyl (BPC) or 2,6-pyridinyl (BPyC) linker was investigated by potentiometric measurements and NMR spectroscopy. Each ligand gave protonated species in aqueous solution that further formed ternary complexes after binding with anions; these complexes were analyzed as a result of hydrogen bond formation and Coulombic attraction between the organic host and the inorganic guest. The equilibrium constants for all the detected species are reported and the selectivity, illustrated with species distribution diagrams, is discussed. The results unambiguously showed the importance of the distance between the two cyclen cores and underlined, especially for the triphosphate species, the contribution of the nitrogen atom of the pyridinyl spacer as a supplementary anchoring point in acidic medium.

Anions↗
PubMed2005

Lanthanide luminescent switches: modulation of the luminescence of bis-macrocyclic based Tb(III) conjugates in water by H+, Na+ and K+.

The synthesis of four bis-macrocyclic conjugates made from the coupling of either diaza-15-crown-5 ethers (1 and 3) and diaza-18-crown-6 ethers (2 and 4) to either amide or carboxylate functionalized cyclen (1,4,7,10-tetraazacyclododecane), and their corresponding cationic Tb(III) complexes, Tb-1, Tb-2, and neutral complexes Tb-3 and Tb-4 are described. The effect on the ground, singlet excited states and the Tb(III) emission, was investigated either as a function of pH or the concentration of several Group I and II cations, upon excitation at 300 nm. The ground state and singlet excited states of the Tb(III) complexes were found to be modulated by ions such as H+, Na+ or K+, signifying the recognition of these ions by the crown ether receptors. In acidic media, below pH 4, the Tb(III) emission was highly pH sensitive, gradually increasing with large orders of magnitude of luminescence enhancements. For Tb-1 and Tb-2 complexes, the Tb(III) emission was also "switched on" in alkaline media above pH 8. At pH 7.4, the recognition of Na+ or K+ also gave rise to a significant change in the Tb(III) emission due to the modulation of the antenna-receptor moieties by these ions. For Tb-1 and Tb-3 the largest changes were seen for Na+, whereas for Tb-2 and Tb-4 the largest changes were seen for K+.

Hydrogen-Ion Concentration↗
PubMed2005

Preparation and characterization of Cr(III), Mn(II), Fe(II), Co(II) and Ni(II) complexes of a hexaazadithiophenolate macrocycle.

The ligating properties of the 24-membered macrocyclic dinucleating hexaazadithiophenolate ligand (L(Me))2- towards the transition metal ions Cr(II), Mn(II), Fe(II), Co(II), Ni(II) and Zn(II) have been examined. It is demonstrated that this ligand forms an isostructural series of bioctahedral [(L(Me))M(II)2(OAc)]+ complexes with Mn(II) (2), Fe(II) (3), Co(II) (4), Ni(II) (5) and Zn(II) (6). The reaction of (L(Me))2- with two equivalents of CrCl2 and NaOAc followed by air-oxidation produced the complex [(L(Me))Cr(III)H2(OAc)]2+ (1), which is the first example for a mononuclear complex of (L(Me))2-. Complexes 2-6 contain a central N3M(II)(mu-SR)2(mu-OAc)M(II)N3 core with an exogenous acetate bridge. The Cr(III) ion in is bonded to three N and two S atoms of (L(Me))2- and an O atom of a monodentate acetate coligand. In 2-6 there is a consistent decrease in the deviations of the bond angles from the ideal octahedral values such that the coordination polyhedra in the dinickel complex 5 are more regular than in the dimanganese compound 2. The temperature dependent magnetic susceptibility measurements reveal the magnetic exchange interactions in the [(L(Me))M(II)2(OAc)]+ cations to be relatively weak. Intramolecular antiferromagnetic exchange interactions are present in the Mn(II)2, Fe(II)2 and Co(II)2 complexes where J = -5.1, -10.6 and approximately -2.0 cm(-1) (H = -2JS1S2). In contrast, in the dinickel complex 5 a ferromagnetic exchange interaction is present with J = +6.4 cm(-1). An explanation for this difference is qualitatively discussed in terms of the bonding differences.

Crystallography, X-Ray↗
PubMed2006

Electrochemistry of copper complexes with macrocyclic polyamines containing pyrazole units.

The voltammetric behaviour of bi- and mono-nuclear complexes formed in solution by Cu(2+) with three polyazacyclophanes containing pyrazole units in aqueous solution is described. Cyclic and square wave voltammetric responses at glassy carbon electrodes indicate that the reduction of copper-macrocycle complexes in solution takes place in two successive one-electron per Cu transfer processes coupled with preorganization and protonation reactions that mimic the behaviour of superoxide dismutase. The electrochemistry of ternary Cu(2+)-receptor-dopamine complexes exhibits significant differences with respect to the protection of the neurotransmitter from post-electron transfer cyclization reactions.

Copper↗
PubMed2005

Combretastatins D-3 and D-4, new macrocyclic lactones from Getonia floribunda.

Chemical investigation of biologically active compounds of Getonia floribunda led to the isolation of two new macrocyclic lactones, combretastatins D-3 (1) and D-4 (2). The structures of these compounds were confirmed by spectroscopic analyses. Combretastatin D-3 (1) exhibited cytotoxicity towards the small-cell lung cancer cell line (NCI-H187, IC50=13.0 +/- 0.2 microg/mL) but was inactive against KB, BC-1, and Vero cell lines. Combretastatin D-3 (1) showed weak antitubercular activity with a minimum inhibitory concentration (MIC) of 100.0 microg/mL, and was inactive towards the malarial parasite. Combretastatin D-4 (2) was inactive in all antitubercular, antiplasmodial, and cytotoxic assays.

Antineoplastic Agents, Phytogenic↗
PubMed2005

Investigation of anticancer activity of macrocyclic Schiff bases by means of 4D-QSAR based on simplex representation of molecular structure.

Influence of the molecular structure of macrocyclic pyridinophanes, their analogues and some other compounds on anticancer activity (Leukemia, central nervous system (CNS) cancer, prostate cancer, breast cancer, melanoma, non-small cell lung cancer, colon cancer, ovarian cancer, renal cancer) was investigated by means of a new 4D-QSAR approach based on the simplex representation of molecular structures (SiRMS). For all the investigated molecules, the 3D structural models were first created and the set of conformers (fourth dimension) was used. Each conformer was represented as a system of different simplexes (tetratomic fragments of fixed structure, chirality and symmetry). Statistic characteristics of the QSAR partial least squares (PLS) models were satisfactory (correlation coefficient r=0.990-0.861; cross-validation coefficient CVR=0.914-0.633). The molecular fragments increasing and decreasing anticancer activity were defined. This information may be useful for the design and direct synthesis of novel anticancer agents.

Antineoplastic Agents↗
PubMed2025

High-Affinity, Structure-Validated and Selective Macrocyclic Peptide Tools for Chemical Biology Studies of Huntingtin.

Huntington's disease (HD) is a fatal neurodegenerative disorder caused by a CAG repeat expansion in the Huntingtin (HTT) gene, with no disease-modifying therapies currently available. The precise molecular function of the HTT protein is unclear, and the lack of selective chemical tools has limited functional studies. We have identified and characterized macrocyclic peptide binders targeting HTT. These binders exhibit low-nanomolar affinity in vitro and engage distinct HTT and HTT-HAP40 interfaces, as revealed by hydrogen-deuterium exchange mass spectrometry and cryo-electron microscopy. Chemoproteomics confirmed selective binding in cell extracts from wildtype but not HTT-null cell lines. HAP40 consistently and stoichiometrically co-purified with HTT across cell lines, including with HTT variants containing different CAG repeat lengths, highlighting the broad presence of the HTT-HAP40 complex.

HAP40↗
PubMed1999

Formation of macrocyclic oligoferrocenes: a matrix-assisted laser desorption/ionization mass spectrometric study.

Oligomeric ferrocenes were investigated simultaneously by matrix-assisted laser desorption/ionization time of flight mass spectrometry (MALDI-TOFMS). The oligomers were obtained by the reaction of tetrahydro-4,4,8,8-tetramethyl-4,8-disila-s-indacene-3a,7a-diyldilithium (Li(2)L) with FeCl(2).1.5 THF (THF = tetrahydrofuran). Depending on the reaction conditions up to ten linear-chain and eleven cyclic ferrocene oligomers with masses between 1139 and 5071 Da could be detected unambiguously. The most abundant macrocycles contained ten and seven iron atoms when the reactions were carried out at -20 and 25 degrees C, respectively. The chains had cyclopentadienes as end groups and formally resulted from replacing one iron of a cycle by two hydrogens, which corresponds to a mass difference of 54 Da. Copyright 1999 John Wiley & Sons, Ltd.

Journal Article↗