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PubMed1999

The contribution of forensic geology and other trace evidence analysis to the investigation of the killing of Italian Prime Minister Aldo Moro.

In May 1978 the body of the kidnapped Italian Prime Minister, murdered by the Red Brigades, was found in a car parked in the center of Rome. This paper discusses the findings from the investigations conducted on the evidence found on Mr. Moro's clothes, shoes (beach sand, bitumen, vegetals and polyester fragments), and on the car. To get a comprehensive picture of the characteristics of the various pieces of evidence, use was made of a multiple-technique approach. The sand was identified as coming from the seashore close to Rome. A tract of shore with a limited number of roads leading to the beach was defined as compatible with the textural and compositional characteristics of the sand. The study of the vegetal fragmenta suggested that they had been picked up in a period of time close to the killing. Thermosetting polyester, of the type used in boat manufacturing was found under the fenders, in the tires and inside the car, as well as under Mr. Moro's shoes, supporting proximity of a beach. Pollen analysis showed that adhesion of volcanic soil to the car fenders antedated adhesion of the sand.

Crime↗

PubMed2006

Novel light-regulated genes in Trichoderma atroviride: a dissection by cDNA microarrays.

The influence of light on living organisms is critical, not only because of its importance as the main source of energy for the biosphere, but also due to its capacity to induce changes in the behaviour and morphology of nearly all forms of life. The common soil fungus Trichoderma atroviride responds to blue light in a synchronized manner, in time and space, by forming a ring of green conidia at what had been the colony perimeter at the time of exposure (photoconidiation). A putative complex formed by the BLR-1 and BLR-2 proteins in T. atroviride appears to play an essential role as a sensor and transcriptional regulator in photoconidiation. Expression analyses using microarrays containing 1438 unigenes were carried out in order to identify early light response genes. It was found that 2.8 % of the genes were light responsive: 2 % induced and 0.8 % repressed. Expression analysis in blr deletion mutants allowed the demonstration of the occurrence of two types of light responses, a blr-independent response in addition to the expected blr-dependent one, as well as a new role of the BLR proteins in repression of transcription. Exposure of T. atroviride to continuous light helped to establish that the light-responsive genes are subject to photoadaptation. Finally, evidence is provided of red-light-regulated gene expression and a possible crosstalk between the blue and red light signalling pathways.

Blotting, Northern↗

PubMed2006

Biodiversity and biogeography of Fusarium species from northeastern North American asparagus fields based on microbiological and molecular approaches.

Sixteen Fusarium species were recovered from 52 asparagus commercial fields, representing all major ecological (edaphic and climatic) area of asparagus production in the province of Québec, eastern Canada. This study extends our understanding of the geographic range of these species. It also provides climatological and edaphic properties linked to community changes and adaptations. Fusarium oxysporum and F. proliferatum were omnipresent and abundant in all five ecological area under study, whereas F. redolens was less frequently found. Species of Fusarium that produce carmine red pigmentation on potato dextrose agar, i.e., F. acuminatum, F. avenaceum, etc., were common at the northern limit of asparagus production. Abundance of red Fusarium species corresponded with a low isolation frequency of F. proliferatum. Nevertheless, F. proliferatum had a high recovery rate throughout Québec asparagus growing areas, under climatic conditions as cold as those of northern Europe where this species is uncommon in asparagus fields. In the light of these results, redefinition of the geographical distribution of F. proliferatum in asparagus fields is proposed. Intraspecific molecular differences in F. proliferatum and F. oxysporum were detected in the EF-1 alpha sequences and compared with well-characterized strains of North America.

Agriculture↗

PubMed1976

Enumeration of petroleum-degrading microorganisms.

A variety of factors, including concentration of oil, antibiotics, dyes, and inoculum washes, were examined to determine their effect on the total counts of microorganisms on oil-containing media. The media found to be best for enumerating petroleum-degrading microorganisms contained 0.5% (vol/vol) oil and 0.003% phenol red, with Fungizone added for isolating bacteria and streptomycin and tetracycline added for isolating yeasts and fungi. Washing the inoculum did not improve recovery of petroleum degraders. Specifically, silica gel-oil medium and a yeast medium are recommended for enumeration of petroleum-degrading bacteria and yeasts and fungi, respectively. It is suggested that counts of petroleum degraders be expressed as percentage of the total population rather than total numbers of petroleum degraders per se. Incubation temperature and presence of oil was found to influence the numbers of petroleum-degrading microorganisms at a given sampling site.

Amphotericin B↗

PubMed2004

Factors inducing the intense burrowing activity of the red-swamp crayfish, Procambarus clarkii, an invasive species.

The burrowing activity of the invasive red-swamp crayfish, Procambarus clarkii, was studied along a 25-m-long transect in an irrigation ditch system in Italy. Our objective was to understand the factors inducing this species' intense digging, which can result in bank collapse and consequently in severe damage to both agricultural fields and natural ecosystems. Burrow morphology and position, together with their occupancy by crayfish and digging, were recorded once every 6 h for 10 consecutive days. The majority of burrows were simple, although a few had a chimney and were constructed at a farther distance from the water surface than simple burrows. Burrow occupancy and digging, together with their plugged/unplugged status, were constant throughout a 24-h cycle and were not related to any abiotic parameter of the habitat. Crayfish occupied and dug a burrow for a relatively short time (6 h on average). Once abandoned, old burrows were rarely reoccupied and often collapsed, while crayfish excavated new ones. As a result, the overall number of burrows increased. This massive use of banks by P. clarkii seems to be related to soil composition and humidity, which favour crayfish digging but also cause the easy collapse of burrows.

Analysis of Variance↗

PubMed2005

Plant growth inhibition by cis-cinnamoyl glucosides and cis-cinnamic acid.

Spiraea thunbergii Sieb. contains 1-O-cis-cinnamoyl-beta-D-glucopyranose (CG) and 6-O-(4'-hydroxy-2'-methylene-butyroyl)-1-O-cis-cinnamoyl-beta-D-glucopyranose (BCG) as major plant growth inhibiting constituents. In the present study, we determined the inhibitory activity of CG and BCG on root elongation of germinated seedlings of lettuce (Lactuca sativa), pigweed (Amaranthus retroflexus), red clover (Trifolium pratense), timothy (Phleum pratense), and bok choy (Brassica rapa var chinensis) in comparison with that of two well-known growth inhibitors, 2,4-dichlorophenoxyacetic acid (2,4-D) and (+)-2-cis-4-trans-abscisic acid (cis-ABA), as well as two related chemicals of CG and BCG, cis-cinnamic acid (cis-CA) and trans-cinnamic acid (trans-CA). The EC50 values for CG and BCG on lettuce were roughly one-half to one-quarter of the value for cis-ABA. cis-Cinnamic acid, which is a component of CG and BCG, possessed almost the same inhibitory activity of CG and BCG, suggesting that the essential chemical structure responsible for the inhibitory activity of CG and BCG is cis-CA. The cis-stereochemistry of the methylene moiety is apparently needed for high inhibitory activity, as trans-CA had an EC50 value roughly 100 times that of CG, BCG, and cis-CA. Growth inhibition by CG, BCG, and cis-CA was influenced by the nature of the soil in the growing medium: alluvial soil preserved the bioactivity, whereas volcanic ash and calcareous soils inhibited bioactivity. These findings indicate a potential role of cis-CA and its glucosides as allelochemicals for use as plant growth regulators in agricultural fields.

Cinnamates↗

PubMed2006

Patterns of litter disappearance in a northern hardwood forest invaded by exotic earthworms.

A field study was conducted to evaluate the effects of exotic earthworm invasions on the rates of leaf litter disappearance in a northern hardwood forest in southcentral New York, USA. Specifically, we assessed whether differences in litter quality and the species composition of exotic earthworm communities affected leaf litter disappearance rates. Two forest sites with contrasting communities of exotic earthworms were selected, and disappearance rates of sugar maple and red oak litter were estimated in litter boxes in adjacent earthworm-free, transition, and earthworm-invaded plots within each site. After 540 days in the field, 1.7-3 times more litter remained in the reference plots than in the earthworm-invaded plots. In the earthworm-invaded plots, rates of disappearance of sugar maple litter were higher than for oak litter during the first year, but by the end of the experiment, the amount of sugar maple and oak litter remaining in the earthworm-invaded plots was identical within each site. The composition of the earthworm communities significantly affected the patterns of litter disappearance. In the site dominated by the anecic earthworm Lumbricus terrestris and the endogeic Aporrectodea tuberculata, the percentage of litter remaining after 540 days (approximately 17%) was significantly less than at the site dominated by L. rubellus and Octolasion tyrtaeum (approximately 27%). This difference may be attributed to the differences in feeding behavior of the two litter-feeding species: L. terrestris buries entire leaves in vertical burrows, whereas L. rubellus usually feeds on litter at the soil surface, leaving behind leaf petioles and veins. Our results showed that earthworms not only accelerate litter disappearance rates, but also may reduce the differences in decomposition rates that result from different litter qualities at later stages of decay. Similarly, our results indicate that earthworm effects on decomposition vary with earthworm community composition. Furthermore, because earthworm invasion can involve a predictable shift in community structure along invasion fronts or through time, the community dynamics of invasion are important in predicting the spatial and temporal effects of earthworm invasion on litter decomposition, especially at later stages of decay.

Animals↗

PubMedDate not supplied

Nitrogen availability from composts for humid region perennial grass and legume-grass forage production.

Perennial forages may be ideally suited for fertilization with slow N release amendments such as composts, but difficulties in predicting N supply from composts have limited their routine use in forage production. A field study was conducted to compare the yield and protein content of a binary legume-grass forage mixture and a grass monocrop cut twice annually, when fertilized with diverse composts. In all three years from 1998-2000, timothy (Phleum pratense L.)-red clover (Trifolium pratense L.) and timothy swards were fertilized with ammonium nitrate (AN) at up to 150 and 300 kg N ha(-1) yr(-1), respectively. Organic amendments, applied at up to 600 kg N ha(-1) yr(-1) in the first two years only, included composts derived from crop residue (CSC), dairy manure (DMC), or sewage sludge (SSLC), plus liquid dairy manure (DM). Treatments DM at 150 kg N ha(-1) yr(-1) and CSC at 600 kg N ha(-1) yr(-1) produced cumulative timothy yields matching those obtained for inorganic fertilizer. Apparent nitrogen recovery (ANR) ranged from 0.65% (SSLC) to 15.1% (DMC) for composts, compared with 29.4% (DM) and 36.5% (AN). The legume component (approximately 30%) of the binary mixture acted as an effective "N buffer" maintaining forage yield and protein content consistently higher, and within a narrower range, across all treatments. Integrating compost utilization into livestock systems that use legume-grass mixtures may reduce the risk of large excesses or deficits of N, moderate against potential losses in crop yield and quality, and by accommodating lower application rates of composts, reduce soil P and K accumulation.

Animal Feed↗

PubMed2005

Catalytic adsorptive stripping voltammetric determination of copper(II) on a carbon paste electrode.

A catalytic adsorptive stripping voltammetric method for the determination of copper(II) on a carbon paste electrode (PCE) in an alizarin red S (ARS)-K2S2O8 system is proposed. In this method, copper(II) is effectively enriched by both the formation and adsorption of a copper(II)-ARS complex on the PCE, and is determined by catalytic stripping voltammetry. The catalytic enhancement of the cathodic stripping current of the Cu(II) in the complex results from a redox cycle consisting of electrochemical reduction of Cu(II) ion in the complex and subsequent chemical oxidation of the Cu(II) reduction product by persulfate, which reduces the contamination of the working electrode from Cu deposition and also improves analytical sensitivity. In Britton-Robinson buffer (pH 4.56+/-0.1) containing 3.6 x 10(-5) mol L(-1) ARS and 1.6 x 10(-3) mol L(-1) K2S2O8, with 180 s of accumulation at -0.2 V, the second-order derivative peak current of the catalytic stripping wave was proportional to the copper(II) concentration in the range of 8.0 x 10(-10) to approximately 3.0 x 10(-8) mol L(-1). The detection limit was 1.6 x 10(-10) mol L(-1). The proposed method was evaluated by analyzing copper in water and soil.

Adsorption↗

PubMed1978

Fermentation, isolation, and biological activity of maduramycin: a new antibiotic from Actinomadura rubra.

In a continuing search for new antibiotics, the species Actinomadura rubra (Sveshnikova et al.) J. Meyer et M. Sveshnikova 1974 (strain IMET 13001) was found to produce a red pigment with indicator properties, designated maduramycin. The pigment (C28H22O10; m.w. 518 m/e-; m.p. 305--310 degrees C (dec.); UVmax 225.307 nm) possesses a strong antimicrobial activity against gram-positive bacteria, including strains which produce inactivating enzymes for some commercial antibiotics. Maduramycin forms a complex with serum albumin, but no complex formation with DNA was observed using absorption spectroscopic and polarographic methods. Maduramycin additionally inhibits the action of some enzymes. The LC50 of maduramycin in mice was greater than 250 mg/kg on intraperitoneal administration. Fermentation, isolation, and some of the chemical and biological properties of this new antibiotic are described.

Anti-Bacterial Agents↗

PubMed2005

Freeze-dried recombinant bacteria for on-site detection of phenolic compounds by color change.

We herein report the development of a recombinant bacterial biosensor for the rapid and easy detection of phenolic compounds in the field. A plasmid was designed to encode a beta-galactosidase reporter gene under the control of capR, an activator involved in phenolic compound degradation. The construct was transformed into Escherichia coli, and transformed cells were stored after being freeze-dried in the presence of sucrose. For detection of phenolic compounds, the cells were rehydrated, and used instantly, without any growth step. In the presence of 0.1 microM-10mM phenol, we observed a red color from hydrolysis of chlorophenol red beta-D-galactopyranoside (CPRG) or an indigo color from hydrolysis of X-galactopyranoside (X-gal). Other phenolic compounds could be detected by this system, including catechol, 2-methylphenol, 2-chlorophenol, 3-methylphenol, 2-nitrophenol, and 4-chlorophenol. These results suggest that this novel bacteria biosensor may be useful for easy, on-site detection of phenolic compounds without the need for unwieldy equipment or sample pretreatment. Indeed, biosensor systems involving beta-galactosidase-expressing freeze-dried recombinant bacteria could prove useful for the in situ detection of many more compounds in the future.

Biosensing Techniques↗

PubMed2000

Fusarium infections of the skin.

Fusarium species are ubiquitous and may be found in the soil, air and on plants. Fusarium species can cause mycotoxicosis in humans following ingestion of food that has been colonized by the fungal organism. In humans, Fusarium species can also cause disease that is localized, focally invasive or disseminated. The pathogen generally affects immunocompromised individuals with infection of immunocompetent persons being rarely reported. Localized infection includes septic arthritis, endophthalmitis, osteomyelitis, cystitis and brain abscess. In these situations relatively good response may be expected following appropriate surgery and oral antifungal therapy. Disseminated infection occurs when two or more noncontiguous sites are involved. Over eighty cases have been reported, many of which had a hematologic malignancy including neutropenia. The species most commonly involved include Fusarium solani, Fusarium oxysporum, and Fusarium moniliforme (also termed F. verticillioides). The diagnosis of Fusarium infection may be made on histopathology, gram stain, mycology, blood culture, or serology. Portals of entry of disseminated infection include the respiratory tract, the gastrointestinal tract, and cutaneous sites.The skin can be an important and an early clue to diagnosis since cutaneous lesions may be observed at an early stage of the disease and in about seventy-five cases of disseminated Fusarium infection. Typical skin lesions may be painful red or violaceous nodules, the center of which often becomes ulcerated and covered by a black eschar. The multiple necrotizing lesions are often observed on the trunk and the extremities. Onychomycosis most commonly due to F. oxysporum or F. solani has been reported. The onychomycosis may be of several types: distal and lateral subungual (DLSO), white superficial (WSO), and proximal subungual (PSO). In proximal subungual onychomycosis there may be associated leukonychia and/or periungual inflammation. Patients with Fusarium onychomycosis have been cured following therapy with itraconazole, terbinafine, ciclopirox olamine lacquer, or topical antifungal agent. In other instances nail avulsion plus antifungal therapy has been successful. In patients with hematologic malignancy or bone marrow transplant, who may experience prolonged or severe neutropenia during the course of therapy, the skin and nails should be carefully examined and consideration given to treating potential infection sites that may serve as portals for systemic dissemination. When disseminated Fusarium infection is present therapy with antifungal agents has generally been disappointing with the chances of a successful resolution being enhanced if the neutropenia can be corrected in a timely manner.

Journal Article↗

PubMed2001

Metabolic inhibition of root water flow in red-osier dogwood (Cornus stolonifera) seedlings.

The short-term effects of sodium azide (NaN(3)) on water flow in red-osier dogwood (Cornus stolonifera Michx.) seedlings were examined in excised roots at a constant pressure of 0.3 MPa. NaN(3) significantly decreased root water flow rates (Q(v)). It also induced a significant reduction in root respiration and reduced stomatal conductance to a greater extent in intact seedlings than in excised shoots. Apoplastic flow of water increased with the NaN(3)-induced decreases in Q(v). Mercuric chloride (HgCl(2)) was also used to characterize the water flow responses and respiration of dogwood roots. Similarly to NaN(3), 0.1 and 0.3 mM HgCl(2) decreased root respiration rates and Q(v). The lower, 0.05 mM HgCl(2) treatment, reduced Q(v), but had no significant effect on root oxygen uptake. The reduction of Q(v) in HgCl(2)-treated plants was only partly reversed by 50 mM mercaptoethanol. The mercurial inhibition of Q(v) suggested the presence of Hg-sensitive water channels in dogwood roots. The results indicate that root-absorbed NaN(3) metabolically inhibited water channel activities in roots and in shoots and resulted in stomatal closure. It is suggested that the inhibition of respiration that occurs in plants stressed with environmental factors such as flooding, cold soils, and drought may be responsible for the closure of water channels in root cells and inhibition of root water flow.

Aquaporins↗

PubMed2005

Natural radioactivity in sand used in thermal therapy at the Red Sea Coast.

The development of climatotherapy in Safaga opens the field of medical tourism in Egypt, in order to detect any harmful radiation that would affect the patients during treatment and is becoming important economic resource. Studies and survey of natural radiation and radioactivity in upper Egypt conducted since 1990, included monitoring of the concentration of natural radionuclides in environmental samples. The results of the study reveals that, for all sand samples, the mean activity concentration of 40K (618+/-122-548+/-82 Bq kg(-1)) are much higher than that of both 226Ra (25.3+/-14-20.6+/-10 Bq kg(-1)) and 232Th (21.4+/-10-22.4+/-10 Bq kg(-1)). Different radiation hazard indices were calculated, the radiation dose to which workers are subjected is not negligible (26.5-50.9 nGy h(-1)), although depending on the inhalation of dust.

Arthritis, Rheumatoid↗

PubMed2001

Is there synchronicity in nitrogen input and output fluxes at the Noland Divide Watershed, a small N-saturated forested catchment in the Great Smoky Mountains National Park?

High-elevation red spruce [Picea rubens Sarg.]-Fraser fir [Abies fraseri (Pursh.) Poir] forests in the Southern Appalachians currently receive large nitrogen (N) inputs via atmospheric deposition (30 kg N ha(-1) year(-1)) but have limited N retention capacity due to a combination of stand age, heavy fir mortality caused by exotic insect infestations, and numerous gaps caused by windfalls and ice storms. This study examined the magnitude and timing of the N fluxes into, through, and out of a small, first-order catchment in the Great Smoky Mountains National Park. It also examined the role of climatic conditions in causing interannual variations in the N output signal. About half of the atmospheric N input was exported annually in the streamwater, primarily as nitrate (NO3-N). While most incoming ammonium (NH4-N) was retained in the canopy and the forest floor, the NO3-N fluxes were very dynamic in space as well as in time. There was a clear decoupling between NO3-N input and output fluxes. Atmospheric N input was greatest in the growing season while largest NO3-N losses typically occurred in the dormant season. Also, as water passed through the various catchment compartments, the NO3-N flux declined below the canopy, increased in the upper soil due to internal N mineralization and nitrification, and declined again deeper in the mineral soil due to plant uptake and microbial processing. Temperature control on N production and hydrologic control on NO3-N leaching during the growing season likely caused the observed inter-annual variation in fall peak NO3-N concentrations and N discharge rates in the stream.

Altitude↗

PubMed2005

Biodegradability of degradable plastic waste.

Plastic waste constitutes the third largest waste volume in Malaysian municipal solid waste (MSW), next to putrescible waste and paper. The plastic component in MSW from Kuala Lumpur averages 24% (by weight), whereas the national mean is about 15%. The 144 waste dumps in the country receive about 95% of the MSW, including plastic waste. The useful life of the landfills is fast diminishing as the plastic waste stays un-degraded for more than 50 years. In this study the compostability of polyethylene and pro-oxidant additive-based environmentally degradable plastics (EDP) was investigated. Linear low-density polyethylene (LLDPE) samples exposed hydrolytically or oxidatively at 60 degrees C showed that the abiotic degradation path was oxidative rather than hydrolytic. There was a weight loss of 8% and the plastic has been oxidized as shown by the additional carbonyl group exhibited in the Fourier transform infra red (FTIR) Spectrum. Oxidation rate seemed to be influenced by the amount of pro-oxidant additive, the chemical structure and morphology of the plastic samples, and the surface area. Composting studies during a 45-day experiment showed that the percentage elongation (reduction) was 20% for McD samples [high-density polyethylene, (HDPE) with 3% additive] and LL samples (LLDPE with 7% additive) and 18% reduction for totally degradable plastic (TDP) samples (HDPE with 3% additive). Lastly, microbial experiments using Pseudomonas aeroginosa on carbon-free media with degradable plastic samples as the sole carbon source, showed confirmatory results. A positive bacterial growth and a weight loss of 2.2% for degraded polyethylene samples were evident to show that the degradable plastic is biodegradable.

Air↗

PubMed2005

Monitoring of the process of composting of kitchen waste in an institutional scale worm farm.

Vermicomposting provides an alternative method of managing waste that is ecofriendly and cost-effective. The Environmental Technology Centre (ETC) at Murdoch University and St. John of God Hospital (SJOG) signed a Memorandum of Understanding (MOU) to install a vermiculture system in SJOG to treat some of the organic waste generated by the on site kitchen facility. This is an effort made by SJOG to reduce the amount of organic waste sent to landfill each year and to treat the waste on site as part of a recycling/reuse program. The study is aimed at scientifically monitoring vermicomposting process and to understand the optimum management requirements to improve the operation of an institutional scale worm farm. In addition, an experiment was conducted to investigate the suitability of bedding materials: horse manure, cow manure, peat coir, and natural bedding (vermicast). The species of earthworms used in this experiment were Red (Lumbricus rubellus), Tiger (Eisenia fetida), and Blue (Lumbricus excavatus). The pH, temperature, worm population and quality of castings were tested in different beds. Results indicated that vermicast was the best bedding for vermicomposting, and there were no significant difference between the performances of the other three beds. However, it can be concluded that the bedding material of horse manure, cow manure, and peat coir were successfully established well within the experimental period of eight weeks, and cow manure with the lowest C:N ratio produced the best quality bedding. As using vermicast for the initial bedding creates a very high capital cost these organic substrates provide cost-effective alternative. Therefore they would be quite appropriate to initiate an institutional scale worm farm.

Animals↗

PubMed2005

Iron content and bioavailability in rice.

Iron deficiency is probably the most widespread micronutrient deficiency in humans. Since rice is the main staple food for more than half of the global population, improving the iron content and bioavailability in rice is a perspective and an effective way to alleviate or even solve this problem. The present paper evaluates the iron content in different cereal foods (black rice, rice, red rice, sticky rice and millet) and different rice seeds as well as in the milling products, and the iron bioavailability of different forms. The data show that the iron content in black rice is higher than in the other rice types, and in rice chaff and husk the content is still fairly high. However, the iron content in rice and fine rice, which are the people's main staple food, is fairly low. As to the bioavailability of iron, it is fairly low in vegetable foods, almost at the level of 10%. Several methods have been applied to improve iron content and bioavailability in rice seed. Apart from breeding and genetic engineering, biochemical and physical approaches have frequently been used as prospective methods to regulate iron content and bioavailability in rice grains.

6-Phytase↗