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We report here binding kinetics of proliferating cell nuclear antigen (PCNA) to the dsDNA immobilized on a 27 MHz quartz-crystal microbalance. PCNA is a toroidal-shaped protein and encircles dsDNA sliding along the strand. The binding behavior of this sliding clamp protein was compared with those of other side binding proteins such as GCN4-bZIP and Zn-finger peptides.
Translation initiation is the most dynamic and important step along a series of protein synthesis processes. In bacteria, it is generally accepted that the 70S ribosome initially dissociates into the 30S and 50S subunit, and then, the 30S ribosomal subunit binds to the Shine-Dargalno (SD) sequence of mRNA. We analyzed binding kinetics of 70S, 50S and 30S ribosomes to the SD sequence by using a mRNA-immobilized 27 MHz quartz-crystal microbalance (QCM). The 70S ribosome was found to bind strongly to the SD sequence as a ratio of 1:1 without dissociation to each subunit from the lateral side, as well as the 30S subunit. The binding constant for 70S increased in the presence of the initiator tRNA, which suggests that the SD and initiator codon of AUG could be also recognized precisely with 70S.
We developed the quartz-crystal oscillator coupled with an admittance analysis to obtain viscoelastic properties and hydration amounts of dsDNA in aqueous solutions. By using this technique, we found that dsDNA became elastic and dehydrated when dsDNA formed a compact structure by the addition of multivalent cations Co(NH(3))(6)(3+) in aqueous solutions.
BACKGROUND: Quartz and dust are known to cause respiratory problems. Slate workers in Alta, Norway are exposed to these compounds even today, and the need for improvement of their work environment was evaluated. METHODS: Respiratory health was examined using chest X-ray, lung function tests and a self-administered questionnaire in a cross-sectional study. RESULTS: The prevalence of silicosis among the slate workers varied between 1.9 and 6.5%. The slate workers had significantly more respiratory symptoms than the controls when adjusted for smoking. Peak expiratory flow was significantly lower among slate workers than among controls. CONCLUSION: The work environment of the slate workers may cause adverse effects in their airways. Improvements to their work environment are indicated.
A detailed kinetic analysis has been performed of the thermoluminescence (TL) glow curve of high purity synthetic quartz. The kinetic parameters of the glow peak at 110 degrees C were evaluated for doses ranging from 0.1 Gy to 100 Gy using glow curve deconvolution (GCD), initial rise, variable heating ratc and phosphorescence decay methods. All the methods gave results that agree within the experimental errors.
The dose response of the 375 degrees C. 470 nm TL peak in fired quartz is studied by using thermoluminescence emission spectra and monochromatic glow curves. The blue emission displays a significant sensitivity increase for doses in excess of 1000 Gy, subsequent saturation at 16 kGy and a pre-dose effect over the entire dose range. Comparison with the growth of the known electron paramagnetic resonance (EPR) centres and radioluminescence emission spectra indicates that the [AlO4] centre is the recombination site for the blue emission, whereas the electron trap remains unknown. The sensitivity change seems to be linked to the dose-induced reduction of the [GeO4/Li] centre. Possible mechanisms for the observed dose response are discussed.
The thermal quenching properties of the thermoluminescence (TL) from several natural quartz specimens were examined, at two different wavelengths, using the heating rate dependence of the TL signal. As the heating rate varies the TL peaks shift to different temperatures and become affected by thermal quenching to different extents. In this work the heating rate was varied over several orders of magnitude and, through deconvolution of the TL glow curve the behaviour of the main TL peaks was followed as a function of the temperature at which the peak appeared in the glow curve. Through an analysis of the glow peak areas as a function of glow peak temperature the decrease in the efficiency of TL production with increasing temperature could be monitored, at the different emission wavelengths. The analysis supports the contention that the quenching phenomenon is a result of a Mott-Seitz mechanism.
Simulations of natural quartz suggest significant variation in luminescence behaviour can be obtained with only minor variations in the concentrations of certain recombination centres. The effect of this variation in behaviour on estimates of absorbed dose are investigated. The novel single-aliquot method of estimating absorbed dose, using radioluminescence to correct for sensitivity changes, is suggested.
The thermoluminescence (TL) glow curves of quartz of various origins were measured under two different conditions, (1) unannealed samples and (2) samples annealed at 500 degrees C and 900 degrees C. The different glow curves obtained were analysed using first order kinetics and glow curve deconvolution (GCD) analysis. The comparison of the glow curves obtained was mainly concentrated in studying the sensitivities of the glow peaks as a function of the annealing temperature, and in obtaining the kinetic parameters of the glow peak at '110 degrees C'. Furthermore, in four samples the detailed comparison was extended to the trapping parameters of all existing glow peaks. It was found that despite their different origin and the different shapes of the glow curves, there are several basic characteristics that are common to all samples studied.
The thermoluminescence (TL) glow curves of irradiated annealed and non-annealed synthetic beta-quartz (Li0.73Al0.73Si1.27O4) synthesised using the ceramic method have been studied. Annealed samples (1200 degrees C for 12 h) exhibit some changes of shape and intensity in the TL glow curves when compared to non-annealed samples in the range of 0.1-5 Gy. These changes can be attributed mainly to thermal alkali self-diffusion through the lattice interfaces involving modifications in the components of the luminescent traps. In non-annealed samples six groups of components at about 100 degrees C, 130 degrees C, 160 degrees C, 210 degrees C, 330 degrees C and 450 degrees C can be found, whereas annealed samples only display one very intense peak at a lower temperature (deconvoluted into three peaks at 90 degrees C, 105 degrees C and 130 degrees C) and a lower intensity second wide broad emission at approximately 240 degrees C. In this paper, a computerised curve-fitting based on general order kinetics has been used to characterise the glow curve structure resolving trapping parameters for each glow peak: trap depth (E), frequency factor (s) and the order of the kinetics (b). The dose dependence of the individual components of the glow curve has been also studied. These data allow us to select the most stable component for use in dosimetric purposes.
In retrospective dosimetry using luminescence it is never possible to obtain a sample of the unaltered phosphor as it was at somc time in the past and before radiation exposure. This prevents direct calibration using conventional personnel dosimetry techniques, and so measurement protocols must be devised which allow accurate estimation of the dose using only the exposed phosphor. This has led to the use of complex protocols, requiring many tens of notionally identical subsamples, to obtain one estimate of the unknown dose. More recently, considerable effort has gone into devising protocols which provide an estimate of the unknown dose from only one subsample. These avoid the need to assume homogeneity in the sample. These protocols also allow faster measurement, which for the first time makes it practical to obtain multiple estimates of the unknown dose and thus externally calculated random errors. This paper discusses the development of single-aliquot protocols, with particular reference to those devised for use with quartz, and finally reviews some of their applications in the retrospective assessment of dose.
Most attempts to apply retrospective dosimetry to building materials have made use of heated (sensitised) items such as brick or tile ceramic. Unfired materials, such as concrete, are far more widespread in the industrial environment, but unfortunately these cannot be assumed to contain a negligible dose at the time of construction. This paper reports on preliminary attempts to measure, using optically stimulated luminescence (OSL), a dose-depth profile in a new concrete brick which had been given a known dose in the laboratory. The dose distribution in individual samples was measured before and after irradiation using small aliquots each of 65 quartz grains, and also using single grains, extracted from the concrete. Despite the material being very poorly zeroed prior to irradiation, both approaches gave satisfactory results and it is concluded that measurement of individual grains from poorly zeroed building materials can provide useful information on accident doses.
In a recent paper Bailey proposed a general model to describe many optically stimulated luminescence (OSL) and thermoluminescence properties of natural quartz. This model consists of five electron trapping centres and four recombination centres: one of the recombination centres is assumed to be radiative and the remaining non-radiative. This paper investigates some additional aspects of the Bailey model. Firstly, the single-aliquot regenerative-dose (SAR) method has been simulated using the model. It is shown that the simulated natural dose (2 Gy) given to the 'sample' in the simulation can be estimated to within approximately 2% using the SAR method. Furthermore, sensitivity-corrected OSL growth curves have been calculated over a dose range of 0 to 2500 Gy. Using the model, it is also demonstrated that the shape of the sensitivity-corrected OSL growth curve is independent of dose rate, for dose rates of 0.001 Gy x s(-1) and 0.1 Gy x s(-1), over a dose range of 0-500 Gy.
The reliability of equivalent-dose determinations on quartz made with the single-aliquot regenerative-dose (SAR) protocol is examined using a suite of sedimentary samples for which the equivalent dose is expected to be >200 Gy. Experiments on one sample were used to evaluate the precision obtained using the standard measurement procedure with (a) a range of pre-heat temperatures, and (b) a single pre-heat temperature. The precision is compared with that achieved using SAR for a repeated dose point after an initial pre-heat, and for a known dose given before the initial pre-heat. It is concluded that, at least for this sample, the scatter in OSL measurements dominates the spread in the estimates of De.
Slag is often the only relic of early pyrometallurgical processes. In archaeological research information about the age of slag deposits is needed and diflicult to obtain with traditional methods. Thermoluminescence has a great potential in this field, because the smelting process leads to a well defined resetting of the 'Luminescence Clock'. Metallurgical slag generally consists of many components, artificial secondary minerals, e.g. fayalite and glass phases usually being the dominant parts. Primary minerals, called relics, are also components or slag. Such a complex composition leads to large difficulties in palaeodose determation if the bulk slag is used. To overcome these problems defined phases of the slag have been separated. Palaeodose determination has been carried out on separated quartz fractions by 'Single Aliquot Regeneration' procedures using the 620 nm emission. The dose rate was determined by high-resolution gamma spectrometry. Alpha autoradiography was carried out to get information about the distribution of radionuclides. The study includes first dating results.
Thermal treatment before optically stimulated luminescence (OSL) measurement is an important step in all widely accepted OSL dating procedures used with quartz. This is a major constraint on the design of a portable luminescence instrument for estimating ages in the field. Preliminary experiments show that using a standard dating protocol without heating caused a 30-50% underestimation of equivalent dose. This underestimate arises mainly from OSL derived from the 110 degrees C thermoluminescence (TL) trap; because of the thermal instability of this trap, this OSL contribution is only present in unheated laboratory-regenerated signals, but not in the natural signal. An alternative to thermal pre-treatment is investigated, based on the mathematical separation of the stable dosimetry OSL signal from the total OSL; the latter is the sum of signals from several traps, including the 110 degrees C TL trap. Our results show consistency with dose estimates obtained using a standard measurement protocol including pre-heating.
We describe an apparatus that can measure the instantaneous angular displacement and torque applied to a quartz particle which is angularly trapped. Torque is measured by detecting the change in angular momentum of the transmitted trap beam. The rotational Brownian motion of the trapped particle and its power spectral density are used to determine the angular trap stiffness. The apparatus features a feedback control that clamps torque or other rotational quantities. The torque sensitivity demonstrated is ideal for the study of known biological molecular motors.
Crystals of bacteriophage PRD1, a virus containing an internal lipid bilayer, have been grown in thin-walled quartz capillary tubes by vapour diffusion as a means of eliminating mechanical handling of the crystals during data collection. It has been found that the addition of polyethylene glycol 20 000 (PEG 20K) to the mother liquor that bathes the crystals allows far higher resolution diffraction intensities to be observed. Growing and treating the crystals in this way has produced a small number of crystals which are particularly amenable to X-ray diffraction analysis.