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PubMedDate not supplied

Thermally induced conformation change of succinoglycan in aqueous sodium chloride.

Static and dynamic light scattering, viscosity, and optical rotation measurements have been made at eight different temperatures between 25 and 75 degrees C on two succinoglycan samples (sodium salt) with weight-average molecular weights M(w) of 7.14 x 10(5) and 3.54 x 10(5) (at 25 degrees C) in 0.01 M aqueous NaCl to investigate the thermally induced order-disorder conformation change of the polysaccharide. Additionally, viscometry and polarimetry have been performed for a sodium salt sample (M(w) = 4.55 x 10(5) at 25 degrees C) whose M(w), z-average radius of gyration (z)(1/2), and hydrodynamic radius R(H) in the aqueous salt had been determined previously. As the temperature increases, M(w), (z)(1/2), R(H), and the intrinsic viscosity for every sample sharply decrease around 55 degrees C where the specific rotation at 300 nm sigmoidally increases. In particular, M(w) at 25 degrees C (i.e., in the ordered helical state) is twice as large as that at 75 degrees C (i.e., in the disordered state). These findings substantiate that the ordered structure is composed of two chains and hence is a double helix. Data analysis shows that this helix at 25 degrees C is characterized by an unperturbed wormlike chain with a helix pitch of about 2 nm (per repeating unit) and a persistence length of about 50 nm and that upon heating, it dissociates directly (i.e., in all-or-none fashion) to disordered chains of a similar contour length but with a much smaller persistence length of about 10 nm. The temperature dependence of the light scattering second viral coefficient is discussed in relation to the association of disordered chains in the cooling process.

Molecular Conformation↗
PubMedDate not supplied

Structure and properties of a bacterial polysaccharide from a Klebsiella strain (ATCC 12657).

The chemical structure and the rheological behavior of the Klebsiella polysaccharide ATCC 12657 was studied and compared with data described in the literature and obtained for similar polysaccharides. The acetylated polysaccharide presents in solution a normal viscoelastic behavior with no evidence of an ordered conformation whatever the experimental conditions are. The deacetylated form can induce the formation of physical gels, in the presence of salt excess or ethanol. Microcalorimetry, optical rotation, and rheology experiments demonstrate that a thermally reversible and highly cooperative conformational transition occurs at the same temperature than a sol-gel transition. The melting of the gel and the conformational transition temperatures are dependent on the nature of cations and ionic concentration, whereas the gel strength is only influenced by polymer concentration.

Carbohydrate Conformation↗
PubMedDate not supplied

Collapse and association of denatured lentinan in water/dimethlysulfoxide solutions.

Triple helical lentinan, beta-(1-->3)-D-glucan from Lentinus edodes, was denatured in dimethlysulfoxide (DMSO) into single random coils. The DMSO solutions of randomly coiled lentinan were diluted with pure water to different wH (the weight fraction of water in the mixed solvent), and their specific optical rotation [alpha]D, reduced viscosity (lnetar)/c, and hydrodynamic radius Rh were investigated as a function of wH and storage time t. With an increase of wH from 0.1 to 0.2, [alpha]D increased sharply, suggesting that transition of conformation of the macromolecules has occurred. When wH was lower than 0.1, (lnetar)/c of lentinan in water-diluted DMSO exhibited the almost same value as that in pure DMSO and changed hardly with increasing t. Interestingly, (lnetar)/c decreased to reach a minimum with a further increase of wH from 0.1 to 0.25 and then increased with a continuous increase of wH from 0.25 to 0.5. Both (lnetar)/c and Rh of the denatured lentinan in water-diluted DMSO with wH of approximately 0.25 both exhibited a minimum, indicating that collapsed coil chains have occurred. All of the experimental findings revealed that the behaviors of lentinan in water-diluted DMSO solution with wH < 0.1 were consistent with that in good solvent, DMSO. When wH = 0.25, the quality of the mixed solvents became worse, and the dominant intramacromolecular hydrogen-bond interaction enhanced, leading to minimum of viscosity and size of the chains as a result of the collapsed coils. When wH > 0.25, the quality of the mixture weakens further, and the intermolecular hydrogen-bond interaction enhanced and was dominant, leading to aggregation of the collapsed chains.

Dimethyl Sulfoxide↗
PubMed2001

Production of toxaphene enantiomers by enantioselective HPLC after isolation of the compounds from an anaerobically degraded technical mixture.

Enantiomers of 12 chlorobornanes were separated on a chiral stationary HPLC phase. The investigated compounds included relevant chlorobornanes in technical toxaphene (Toxicant A and an unknown hepatachlorobornane), anaerobically mediated media such as sediment, soil, and sewage sludge (B6-923, B7-1001), as well as eight persistent compounds of technical toxaphene (CTTs) frequently detected in biological samples (B7-1000, B7-1453, B8-1412, B8-1413 or P-26, B8-1414 or P-40, B8-1945 or P-41, B8-2229 or P-44, and B9-1679 or P-50). Sufficient amounts of these 12 CTTs were not commercially available and had to be produced in our lab. Eight CTTs were obtained from sewage sludge that was spiked with technical toxaphene and kept under anaerobic conditions for four weeks. The samples were extracted with hexane followed by RP-HPLC fractionation. The resulting toxaphene pattern was significantly simpler than that of the technical mixture. CTTs that showed intense fragmentation in GC/ECNI-MS were preferably metabolized. Moreover, only one of the diastereomers that make Toxicant A (B8-806/B8-809 or P-42a/b) resisted degradation in sewage sludge. We found that the persistent component of Toxicant A is 2,2,5-endo,6-exo,8,9,9,10-octachlorobornane (B8-809 or P-42b). B9-1679 (P-50), B7-1453, and B8-1412 were earlier isolated from biological samples, and B7-1000 was isolated from naturally contaminated sediments. The fractions obtained after these procedures were suitable for enantioselective HPLC separations. The first eluting enantiomer was usually obtained as an enantiopure standard whereas the second eluting enantiomer also contained the other enantiomer. Attempts to determine the optical rotation with the help of a chiral HPLC detector failed. Elution orders of the enantiomers were established on three GC chiral stationary phases. Only the enantiomers of B7-1453 and B8-1945 (P-41) eluted in the same order from all CSPs while the others showed different enantiomer elution orders or were not resolved on one of the chiral GC stationary phases. The knowledge and consideration of these results is important for the interpretation of enantiomer ratios found in biological samples and comparison of literature data.

Camphanes↗
PubMed2002

Pseudotetrahedral polyhaloadamantanes as chirality probes: synthesis, separation, and absolute configuration.

Pseudotetrahedral, conformationally as well as configurationally stable 1-bromo-3-chloro-5-fluoro- (4) and 1-bromo-3-chloro-5-fluoro-7-iodoadamantane (5) (and some related compounds) were prepared by our recently devised phase-transfer catalytic halogenation protocol; the optical antipodes of 4 were separated by HPLC on chiral phase in ee > 99%, and the absolute configurations were assigned by matching observed and computed circular dichroism spectra. Structure 5 is the first chiral aliphatic hydrocarbon containing all stable (nonradioactive) halogens; its structure was proven by NMR spectroscopy and by X-ray crystal data. We emphasize that the combination of experiment and theory is very powerful in assigning absolute configurations even for molecules without typical chromophors, with small values for the optical rotation, and without an atom at the stereogenic center.

Journal Article↗
PubMed2003

Diastereoselective photochromism of a bisbenzothienylethene governed by steric as well as electronic interactions.

Introduction of an asymmetric center to C-2 of one of the benzothiophene rings of bisbenzothienylperfluorocyclopentene results in a highly diastereoselective photochromic system. The stereogenic center bears a hydrogen atom, a methyl group, and a methoxymethoxy group. The steric as well as the electronic repulsions gave an 87-88% diastereomer excess in various solvents at room temperature with 80-85% conversion to the colored form. The enantioselective synthesis was also carried out. Upon photoirradiation in hexane, a change in optical rotation at 820 nm, where neither the open form nor the colored form absorbs light, was observed repeatedly.

Journal Article↗
PubMed2003

(S)-selective dynamic kinetic resolution of secondary alcohols by the combination of subtilisin and an aminocyclopentadienylruthenium complex as the catalysts.

A new procedure for the dynamic kinetic resolution (DKR) of racemic alcohols into single enantiomers is described. This procedure employs surfactant-treated subtilisin as an (S)-selective resolving catalyst and an aminocyclopentadienylruthenium complex as a racemizing catalyst. The DKR is performed best in the presence of an acyl donor such as trifluoroethyl butyrate in THF at room temperature. Eight simple secondary alcohols have been efficiently resolved with high optical purities and good yields. The subtilisin-based DKR is complementary in stereoselectivity to its lipase-based counterpart. For an acyl-carrying alcohol, both subtilisin- and lipase-based DKRs have proceeded equally well to give a pair of enantiomeric products (>99.5% ee each) with opposite optical rotations in high yields (94-95%).

Benzyl Alcohols↗
PubMed2004

Helically annelated and cross-conjugated oligothiophenes: asymmetric synthesis, resolution, and characterization of a carbon-sulfur [7]helicene.

The synthesis and characterization of a novel oligothiophene, in which the thiophene rings are annelated into a [7]helicene with cross-conjugated pi-system, are described. Such [7]helicenes may be viewed as fragments of the unprecedented carbon-sulfur (C(2)S)(n)() helix, possessing sulfur-rich molecular periphery. Racemic synthesis of [7]helicene is based upon iterative alternation of two steps: C-C bond homocouplings between the beta-positions of thiophenes and annelation between the alpha-positions of thiophenes. Asymmetric synthesis is carried out using (-)-sparteine-mediated annelation of the axially chiral bis(aryllithium) with electrophilic sulfur equivalent. Alternatively, enantiomers of the [7]helicene are obtained via resolution using menthol-based chiral siloxanes. Racemic [7]helicene and four other macrocyclic products of the annelation are characterized by X-ray crystallography. One of the solvent polymorphs of the [7]helicene possesses pi-stacked columns of opposite enantiomers and multiple short intermolecular contacts, including both homochiral and heterochiral short S...S contacts, suggesting an effective intermolecular electronic coupling in two-dimensions. The [7]helicene is configurationally stable at room temperature and racemizes at 199 degrees C with a half-time of about 11 h. Selected physicochemical studies (UV-vis absorption, CD, optical rotation, and cyclic voltammetry) of the [7]helicene are described.

Journal Article↗
PubMed2004

Ab initio calculation of optical rotatory dispersion (ORD) curves: a simple and reliable approach to the assignment of the molecular absolute configuration.

In this paper, both Hartree-Fock (HF) and density functional theory (DFT) methods have been used to make ab initio calculations of the optical rotatory power of selected molecules at several wavelengths; that is, part of the optical rotatory dispersion (ORD) curve has been predicted. This approach constitutes a new, simple, and reliable method to assign the molecular absolute configuration, at least for rigid molecules such as those studied in the present work. In fact, in this way, it is possible to overcome the difficulties connected to some relevant cases, in particular that of (-)-beta-pinene, for which even a very high-level (DFT/B3LYP/6-311++G(2d,2p)) calculation affords the wrong sign of the optical rotation at 633 nm. On the contrary, the predicted ORD curve, even using small basis sets, reproduces (below 400 nm) the experimental trend well, allowing for the correct configurational assignment. This result clearly shows that to have a reliable configurational assignment the comparison between experimental and predicted rotation values must be carried out at different wavelengths and not at a single frequency. The reason for this is that working at wavelengths approaching the absorption maximum the [alpha](lambda) values become larger and their prediction becomes more reliable. Coupling the use of an inexpensive instrument (a polarimeter working at a few wavelengths) with the use of a DFT-calculation package can also allow the experimental organic chemist to arrive, quickly and reliably, at the assignment of the molecular absolute configuration.

Journal Article↗
PubMed2005

Chiral discrimination in photochromic helicenes.

A photoresponsive dithienylethene derivative bearing chiral pinene-based arms underwent a stereoselective photoinduced cyclization reaction to produce greater than 98% of a single diastereomer. The magnitude of the optical rotation changed as much as Delta[alpha]373 = 8698 degrees upon alternate irradiation with 400 nm and greater than 434 nm light.

Journal Article↗
PubMed2005

Abiotic metallofoldamers as electrochemically responsive molecules.

Described are the design, synthesis, and study of nonbiological molecules based on salophen and salen ligands that fold into single-stranded helices in the presence of either Ni(II) or Cu(II). X-ray diffraction studies show that the materials fold into helical structures in the solid state, and a series of NMR studies provide strong evidence that the folded structures are conserved in solution. Metal coordination is required for folding, as NMR and X-ray show that the free ligands do not adopt helical structures. Two of the racemic metallofoldamers spontaneously resolve during crystallization from CHCl3/acetonitrile, and CD spectroscopy and optical rotation show that the resolved, crystalline materials racemize quickly when dissolved at 5 degrees C. This shows that the secondary structures can reorganize easily and can, therefore, provide the basis for responsive materials. By comparison, an analogue from enantiomerically pure (R,R)-(-)-trans-cyclohexanediamine showed a strong CD signal and a large specific rotation. Electrochemical experiments show that a structural reorganization occurs upon metal-centered reduction of a Cu(II)-containing foldamer. When the reduction is carried out in the presence of coordinating ligands, it is proposed that apical binding of those ligands gives square pyramidal complexes. Semiempirical (AM1) calculations support that the helical structure would be disrupted by the reduction to Cu(I) with concomitant reorganization to a square pyramidal complex.

Biomimetic Materials↗
PubMed2006

Enantioselective total synthesis of batzelladine F and definition of its structure.

Batzelladine F (1) was synthesized in enantioselective and stereoselective fashion in 15 steps (longest linear sequence) and 1.7% overall yield from two readily available enantioenriched beta-hydroxy esters, methyl (R)-3-hydroxydecanoate and methyl (R)-3-hydroxybutyrate. Tethered Biginelli condensations are used to assemble both tricyclic guanidine fragments, with the second tethered Biginelli condensation (14 + 16 --> 17) also being employed to join the guanidine fragments. Three diastereomers of batzelladine F, 2-4, were prepared also. A combination of HPLC, optical rotation and CD spectroscopy was employed to distinguish stereoisomers 1-4, proving that 1 is the correct structure of the hexacyclic marine alkaloid batzelladine F.

Alkaloids↗
PubMed2006

Chiral discrimination of cryptochiral saturated quaternary and tertiary hydrocarbons by asymmetric autocatalysis.

Chiral discrimination of saturated hydrocarbons has been very difficult to establish, or has not been possible at all. The first chiral discrimination of cryptochiral 5-ethyl-5-propylundecane 1, that is, (n-butyl)ethyl(n-hexyl)(n-propyl)methane, a chiral saturated quaternary hydrocarbon, which is known to exhibit practically no detectable value of optical rotation between 280 and 580 nm, has been accomplished by asymmetric autocatalysis of pyrimidyl alkanol. The absolute configuration of 1 has been determined. In the presence of (R)- or (S)-1, the reaction between pyrimidine-5-carbaldehyde and diisopropylzinc affords (S)- and (R)-pyrimidyl alkanol with 91-97% ee, respectively. Thus, asymmetric autocatalysis serves as a powerful tool for the chiral discrimination of saturated hydrocarbons.

Alkanes↗
PubMed2006

Structure assignment of lagunapyrone B by fluorous mixture synthesis of four candidate stereoisomers.

Techniques of fluorous mixture synthesis have been used to make four candidate stereoisomers for the natural product lagunapyrone B. A quasiracemic mixture of vinyl iodides whose component configurations at C19-21 were encoded by fluorous silyl groups was fused to a central fragment by a Negishi coupling. A separate quasiracemic mixture of pyrone fragments whose component configurations at C6,7 were also encoded by fluorous silyl groups was synthesized and demixed. Stille coupling of the resulting pure quasienantiomers with the quasiracemic mixture provided two quasi-diastereomeric samples, which were demixed and detagged to provide all four lagunapyrone B stereoisomers. Lagunapyrone was assigned the 6R,7S,19S,20S,21R configuration by comparison of optical rotations.

Alkenes↗