Search PubMed⌕ Search

SEARCH · Search PubMed

Results for “FIRS”

Search indexed PubMed citations on genomics, clinical trials, systematic reviews and public health. Explore titles, authors and supplied subject terms, then open the PubMed record.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 595 records · Page 33Linked to original sources

Fate of spinosad in litter and soils of a white spruce plantation in central Ontario.

Spinosad is a natural insecticide with potential as a novel biorational control agent for spruce budworm (Choristoneura fumiferana [Clem]), the most destructive insect defoliator of spruce and balsam fir in Canada. Concurrent terrestrial fate experiments were conducted under full coniferous canopy and in a natural opening of a mature white spruce (Piecea glauca [Moench]) plantation of central Ontario to examine the fate and persistence of spinosad in the forest floor and underlying soils. Mean initial residues of spinosyn A and D were approximately 0.2 and 0.02 microgram g-1, respectively, in thatch and exposed soils, but were substantially higher, 2.72 and 0.36 micrograms g-1, in litter under coniferous canopy. Results demonstrated that spinosad residues in spruce litter, graminaceous thatch and exposed sandy loam soils dissipated rapidly, following hyperbolic or exponential decline models. Dissipation time (DT50) values ranged from 2.0 to 7.8 days, depending on matrix and experimental conditions. Transient increases in demethylated metabolite residues confirmed that the parent product was degraded in situ. No evidence of vertical mobility of any of the analytes was observed.

Anti-Bacterial Agents↗

Composition and antibacterial activity of Abies balsamea essential oil.

The antibacterial activity of the essential oil of Abies balsamea (balsam fir) was evaluated against Escherichia coli and Staphylococcus aureus. The essential oil of A. balsamea was found to be inactive against E. coli (>100 microg/mL) and active against S. aureus, with an MIC of 56 microg/mL. The oil composition was analysed by GC-MS and the antibacterial activity of each oil constituent was determined. The essential oil of A. balsamea is essentially constituted of monoterpenes (>96%) and some sesquiterpenes. beta-pinene (29.9%), delta-3-carene (19.6%) and alpha-pinene (14.6%) were the major components. beta-pinene and delta-3-carene were found inactive against both bacteria strains. However, three constituents of the essential oil were active against S. aureus: alpha-pinene, beta-caryophyllene (0.4%) and alpha-humulene (0.2%) with MIC values of 13.6 microg/mL, 5.1 microg/mL and 2.6 microg/mL, respectively.

Abies↗

Purification and characterization of taxa-4(5),11(12)-diene synthase from Pacific yew (Taxus brevifolia) that catalyzes the first committed step of taxol biosynthesis.

The first step in the biosynthesis of taxol in Pacific yew (Taxus brevifolia) is the cyclization of the universal diterpene precursor geranylgeranyl pyrophosphate to taxa-4(5),11(12)-diene. This parent olefin of the taxane diterpenoids is then elaborated to taxol and related compounds by a complex series of reactions involving oxidations and side-chain acylations. Cyclization activity is located principally in yew stem bark and adhering cambium. The operationally soluble cyclization enzyme was partially purified (approximately 600-fold) by combination of anion exchange, hydrophobic interaction, and dye-ligand chromatography. Nondenaturing, followed by denaturing, polyacrylamide gel electrophoresis, in combination with gel permeation chromatography, allowed the identification of taxadiene synthase as a monomeric protein of molecular weight 79,000. In general properties (divalent metal ion requirement, kinetic constants, molecular weight), the taxadiene synthase of Pacific yew is similar to the diterpene cyclase abietadiene synthase involved in resin acid biosynthesis in other gymnosperms. However, in pH optimum and response to inhibitors, these two diterpene cyclases are distinctly different. The activity (and enzyme protein) levels of Pacific yew taxadiene synthase are much lower than those for abietadiene synthase of lodgepole pine stem (constitutive) or of grand fir stem (wound-inducible) and the enzyme is not inducible to higher levels by stem wounding or elicitor treatment.

Alkenes↗

Mechanism of monoterpene cyclization: stereochemical aspects of the transformation of noncyclizable substrate analogs by recombinant (-)-limonene synthase, (+)-bornyl diphosphate synthase, and (-)-pinene synthase.

The tightly coupled nature of the reaction sequence catalyzed by monoterpene synthases has prevented direct observation of the topologically required isomerization step leading from geranyl diphosphate to the presumptive, enzyme-bound, tertiary allylic intermediate linalyl diphosphate, which ultimately cyclizes to the various monoterpene skeletons. Previous experimental approaches using the noncyclizable substrate analogs 6,7-dihydrogeranyl diphosphate and racemic methanogeranyl diphosphate, in attempts to dissect the cryptic isomerization step from the normally coupled reaction sequence, were thwarted by the limited product available from native monoterpene synthases and by the inability to resolve chiral monoterpene products at the microscale. These approaches were revisited using three recombinant monoterpene synthases and chiral phase capillary gas chromatographic methods to separate antipodal products of the substrate analogs. The recombinant monoterpene olefin synthases, (-)-limonene synthase from spearmint and (-)-pinene synthase from grand fir, yielded essentially only achiral, olefin products (corresponding to the respective analogs and homologs of myrcene, trans-ocimene and cis-ocimene) from 6,7-dihydrogeranyl diphosphate and (2S,3R)-methanogeranyl diphosphate; no significant amounts of terpenols or homoterpenols were formed, nor was direct evidence obtained for the formation of the anticipated analog and homolog of the tertiary intermediate linalyl diphosphate (i.e., 6,7-dihydrolinalyl diphosphate and homolinalyl diphosphate, respectively). In the case of recombinant (+)-bornyl diphosphate synthase from common sage, the achiral olefins were generated, as before, from 6,7-dihydrogeranyl diphosphate and (2R,3S)-methanogeranyl diphosphate, but 6,7-dihydrolinalool and homolinalool also comprised significant components of the respective product mixtures, indicating greater access of water to the active site of this enzyme compared to the olefin synthases; again, no direct evidence for the production of 6,7-dihydrolinalyl diphosphate or homolinalyl diphosphate was obtained. Resolution of the terpenol products of (+)-bornyl diphosphate synthase, by chiral phase separation, revealed the predominant formation of (3R)-dihydrolinalool from dihydrogeranyl diphosphate and of (4S)-homolinalool from (2R,3S)-methanogeranyl diphosphate. The opposite stereochemistries of these products indicates water trapping from opposite faces of the corresponding tertiary carbocationic intermediates of the respective reactions, a phenomenon that appears to result from the binding conformations of these substrate analogs. Although these experiments failed to provide direct evidence for the tertiary intermediate of the tightly coupled isomerization-cyclization sequence, they did reveal a mechanistic difference between the olefin synthases and bornyl diphosphate synthase involving access of water as a participant in the reaction.

Binding Sites↗

Visualization of Golgi apparatus in methacrylate embedded conifer embryo tissue using the monoclonal antibody JIM 84.

Methacrylate embedding followed by resin removal has been used for the first time to visualize a membrane-associated antigen at the tissue level. Monoclonal antibody JIM 84 was used to stain the Golgi apparatus of gymnosperm (conifer) embryos by light microscope immunocytochemistry. Specificity of labelling was confirmed by electron microscope immunocytochemistry using LR-white resin. GA staining was evident in all stages of white spruce somatic embryo development from immature to mature. Some regions of the somatic embryos (e.g. root cap/suspensor region) stained more vigorously than other regions (hypocotyl/cotyledon end). GA also stained in roots of Monterey pine and Douglas fir. Unlike the situation in most angiosperms, JIM 84 antigen appears to be absent from the conifer plasma membrane. However, it appears to be present in representatives of both major classes of higher plants.

Antibodies, Monoclonal↗

Effects of digital filtering on the parameters of sinusoidal tracking eye movements.

In the present study linear nonrecursive (FIR) filters designed with the Hamming window and hybrid median filters were examined in connection with computer analysis of sinusoidal tracking eye movements. It is important that digital filters which do not distort sensitive properties of eye movement signals are employed in order to prevent changes caused by too strict filtering in average parameter values of eye movement signals, indicators of some otoneurological disorders. It turned out that within reasonable limits these filters are valid in filtering of sinusoidal tracking eye movement signals.

Automation↗

Characterization of Nuclear Polyhedrosis Viruses from Three Subspecies of Lambdina fiscellaria

The eastern hemlock looper (EHL), Lambdina fiscellaria fiscellaria, the western hemlock looper (WHL), L. fiscellaria lugubrosa, and the western oak looper (WOL), L. fiscellaria somniaria, are closely related insects that are pests in Canadian forests. We have used restriction endonuclease (REN) and Southern blot analyses to characterize DNA of nuclear polyhedrosis viruses (NPVs) isolated from each of the three subspecies of L. fiscellaria. REN analysis of EHL-NPV, WHL-NPV, and WOL-NPV DNAs revealed that they have nonidentical REN-banding patterns. NPV DNA extracted from WOL larvae collected from Douglas fir trees had a different REN pattern than NPV DNA extracted from WOL larvae collected from Garry oak trees. Hybridization of radiolabeled EHL-NPV genomic DNA revealed that the EHL- and WHL-NPVs share considerable DNA sequence similarity, as radiolabeled EHL-NPV DNA hybridized strongly with all WHL-NPV DNA bands. The EHL-NPV polyhedrin gene hybridized strongly with WHL-NPV DNA, but the hybridization patterns of the two NPVs were different. Very weak hybridization was detected between the EHL-NPV polyhedrin gene and DNAs of the two WOL-NPVs. Nucleotide sequence analysis revealed that the polyhedrin genes of EHL-NPV and WHL-NPV differ in sequence by only eight nucleotide substitutions (five third position and three second position changes, resulting in four amino acid substitutions). Phlyogeneitc analysis using the polyhedrin genes of EHL-NPV and WHL-NPV indicate that these two viruses cluster with the Group II NPVs as described by Zanotto, Kessing, and Maruniak (1993, J. Invertebr. Pathol. 62, 147).

Journal Article↗

Characterization of a nucleopolyhedrovirus from the vapourer moth, Orgyia antiqua (Lepidoptera Lymantriidae).

The first characterization of a nucleopolyhedrovirus (NPV Baculoviridae) isolated from the vapourer moth, Orgyia antiqua (Lepidoptera Lymatriidae), in the United Kingdom is presented. Transmission electron microscopy revealed that the virus nucleocapsid rods were singly enveloped in the polyhedron inclusion body (PIB) so that the virus is assigned to the SNPV subgenus of the Baculoviridae. Restriction endonuclease analyses of viral DNA indicated a genomic size of approximately 148 kb. Restriction profiles of O. antiqua SNPV closely resembled those of heterologous NPVs isolated from four different Orgyia species and was most similar to a North American SNPV isolate from the Douglas-fir tussock moth, O. pseudotsugata. In host range tests, O. antiqua SNPV was not infectious to 23 lepidopteran species representing four families. Heterologous Orgyia NPV isolates were permissive in O. antiqua larvae. Using a diet plug bioassay method, the median lethal dose response (LD(50)) for this virus in second and third instar O. antiqua larvae were estimated at 52 and 539 PIBs per larva, respectively.

Animals↗

The Rotational Spectrum of H2Te

In the present work, we study the spectrum of the H2Te molecule in the submillimeter-wave and far infrared region. An important aim of this investigation is the further experimental characterization of the anomalous "four-fold cluster effect" exhibited by the rotational energy levels in the vibrational ground state of H2Te. The spectrum in the region 90-472 GHz was measured with a source-modulated millimeter-wave spectrometer and that between 600 and 1600 GHz with a far-infrared sideband spectrometer. The far infrared spectrum from 30 to 360 cm-1 was measured with a Bruker IFS 120 HR interferometer attached to a 3 m long cell. We have assigned 224 submillimeter-wave lines and 1695 FIR lines. These observed data were supplemented by a large number of ground state combination differences derived from rotation-vibration bands of H2Te, and the resulting large data set was analyzed by means of a modified Watson Hamiltonian. Accurate sets of rotational and centrifugal distortion constants for all eight tellurium isotopomers were obtained.

Journal Article↗

Precise Measurement of the Pure Rotational Submillimeter-Wave Spectrum of HCl and DCl in Their v = 0, 1 States

High-resolution sub-Doppler Lamb-dip measurements were performed on the low-J pure rotational transitions of the hydrogen chloride isotopomers H35Cl, H37Cl, D35Cl, and D37Cl in the submillimeter-wave region up to 646 GHz. For the J = 1-0 transitions of the two HCl isotopomers, the hyperfine splitting due to the hydrogen nuclear spin-rotation interaction is resolved. Furthermore Doppler-limited lines of the DCl J = 3 <-- 2 transition around 965 GHz as well as hyperfine-resolved rotational transitions in the first excited vibrational state were recorded up to 1.22 THz. The new frequencies were analyzed in a global fit together with FIR data yielding a set of mass-invariant rotational parameters. Isotopically invariant hyperfine parameters were obtained also from the global fit. Inclusion of the precise results from molecular beam electric resonance measurements allowed the determination of higher orders of the vibrational and rotational expansion coefficients of the chlorine and hydrogen hyperfine interactions. The precise transition frequencies reported here should be useful as secondary calibration standards in the submillimeter-wave and terahertz region. Copyright 1998 Academic Press. Copyright 1998Academic Press

Journal Article↗

Global Fit of Torsion-Rotation Transitions in the Ground and First Excited Torsional States of CD3OH Methanol

A global analysis of reported microwave (MW) millimeter wave (MMW), and Fourier-transform far-infrared (FTFIR) spectra of the CD3OH isotopic species of methanol has been carried out for the first two torsional states (nut = 0 below the barrier and nut = 1 straddling the barrier) of the ground vibrational state. The CD3OH data set contains 472 MW and MMW lines and 5320 FTFIR lines, representing the most recent available information in the quantum number ranges J </= 20 and K </= 15. The transitions have been successfully fitted to within the assigned measurement uncertainties of &plusmn;100 kHz for most of the MW and MMW lines and &plusmn;6 MHz for the FIR lines with the use of a program (I. Kleiner and M. Godefroid, private communication) based on the formalism of Herbst et al. (J. Mol. Spectrosc. 108, 42-57, 1984). A convergent global fit was achieved using 54 adjustable parameters to reach an overall weighted standard deviation of 0.966. The new parameters for CD3OH are compared with previous global fitting results for the 12CH3OH and 13CH3OH isotopomers. Copyright 1998 Academic Press.

Journal Article↗

Lamb-Dip Millimeter-Wave and High-Resolution Far Infrared Spectra of HCCF.

The ground state rotational spectrum of fluoroacetylene was measured in the millimeter-wave and FIR regions up to 1280 GHz and J = 65. Very accurate values of the rotational and centrifugal distortion constants were determined and in particular a more reliable value of H0 = 2.0 10(-4) Hz has been obtained compared to that previously determined of -0.30 Hz. HCCF was prepared in a dc glow discharge in presence of 1,3,5-trifluorobenzene. Copyright 1998 Academic Press.

Journal Article↗

Frequencies of Optically Pumped Sub-Doppler Far-Infrared Laser Lines of Methanol.

Sub-Doppler signals from the gain curves of four lines of a transversely pumped far-infrared methanol laser were used to stabilize the frequencies of the laser. The frequencies of four of the strongest FIR laser lines (70, 119, 123, and 570 µm) were measured. Lasers locked to these lines have a frequency reproducibility of a few parts in 10(8) and an uncertainty of less than 30 kHz. Copyright 1998 Academic Press.

Journal Article↗

Fourier Transform Infrared Spectroscopy and Vibrational Coupling in the OH-Bending Band of 13CH3OH.

We present in this work a high-resolution Fourier transform infrared study of the OH-bending vibrational band of 13CH3OH. We have investigated the 1070-1400 cm-1 spectral region at 0.002 cm-1 resolution using the modified Bomem DA3.002 Fourier transform spectrometer at the Steacie Institute for Molecular Sciences at the National Research Council of Canada in Ottawa. This study has led to (i) determination of excited-state J(J + 1) subband expansion coefficients and (ii) characterization of a variety of interactions coupling the different vibrational modes, notably a strong Fermi resonance between the OH bend and the torsionally excited CH3-rocking mode. The OH-bending band is widely spread with Q subbranches grouped in two peaks at about 1312 and 1338 cm-1. The lower levels for all assigned subbands were confirmed using closed loops of IR and FIR transitions. The subbands have been fitted to J(J + 1) power-series expansions in order to obtain the subband origins and the state-specific energy expansion coefficients for both the OH-bending and excited torsional CH3-rocking states. The strong interaction between the OH-bending state and the first excited torsional CH3-rocking state gives rise to several "extra" forbidden subbands due to intensity borrowing. The asymmetry splitting of the (ntauK) v = (122)OH A OH-bending doublet was found to be anomalously small, and the splitting of the (122)rA CH3-rocking doublet is observed to be enhanced. We have identified a network of intermode interactions causing this unusual behavior, but a quantitative analysis of the vibrational coupling is restricted by limited knowledge of the unperturbed positions of the interacting levels. All these interactions provide relaxation channels for intramolecular vibrational redistribution among the lower vibrational modes in 13CH3OH. Another important finding is that the torsion-K-rotation energy curves in the OH-bending state display an inverted pattern compared to the ground state. Copyright 1998 Academic Press.

Journal Article↗

Microwave a-Dipole Transitions of CH2DOH and CHD2OH in Excited Torsional States.

Previously identified, measured, and rotationally assigned but unpublished J = 0-1 and 1-2 microwave a-dipole lines for excited states of the torsion for CH2DOH and CHD2OH are given torsional assignments for the first four excited states. The troublesome assignments were for the K-1 = 0 lines of the o2 state of CH2DOH and the e2 state of CHD2OH, where a resonance is found for the J0J levels. The assignment for these states was facilitated by combination differences with the b- or c-dipole intratorsional state transitions, relative intensities, and FIR combination differences for the e2 and e3 states of CH2DOH. A few new b- and c-dipole assignments are reported for o2 of CH2DOH and e2 of CHD2OH. Transitions for these two states have been analyzed to estimate the strength of the resonant interaction and energy difference for the levels involved and to estimate how well the theory is predicting the K-1-dependent torsional energy levels. The empirically determined DeltaB and DeltaC from nonrigidity for each species for the four excited states should prove helpful for future calculations of vibration-internal rotation-overall rotation interactions in these molecules. Copyright 1998 Academic Press.

Journal Article↗

The Far-Infrared Laser Magnetic Resonance Spectrum of CH2F.

Far-infrared laser magnetic resonance (FIR-LMR) spectra due to the CH2F radical have been recorded on seven laser lines at wavelengths between 301 and 568 µm. Observed resonances were assigned to fine and hyperfine components of pure rotational transitions of CH2F in the ground vibrational state and the first excited state of the nu4 out-of-plane bending mode. All assigned transitions obey a-dipole selection rules. The data were combined with previously reported microwave results (Y. Endo, C. Yamada, S. Saito, and E. Hirota, J. Chem. Phys. 79, 1605 (1983)) and subjected to a least-squares fit to determine the parameters of the effective Hamiltonian describing the v4 = 0 and 1 vibrational levels of the CH2F radical. Copyright 1999 Academic Press.

Journal Article↗

LaseRitz: Far-Infrared Laser Line Assignment and Prediction by the Ritz Combination Principle, with Application to Methanol and Hydrazine.

A "LaseRitz" program is described for the systematic assignment and prediction of far-infrared laser (FIRL) transitions for a given molecule, such as methanol or hydrazine, which can be generated by optical pumping with known laser lines. The input data set for the program consists of identified molecular energy levels in ground and excited vibrational states, as compiled by our Ritz assignment program from the analysis of infrared (IR) bands and the FIR ground state spectrum. The program scans the data set for appropriate IR matches with an input list of laser pump lines for CO(2), N(2)O, etc., and generates an output table of all possible FIRL lines consistent with the molecular selection rules and lying within a prescribed wavenumber range. Initial tests on CH(3)OH have led to three likely new FIRL assignments; for N(2)H(4), assignments have been found for 14 new FIRL transition systems and verified for five others. Lists have been produced (deposited as supplementary data with the JMS archive reached at www.idealibrary.com or available on request from the authors) of CH(3)OH and N(2)H(4) FIRL lines potentially accessible by optical pumping with regular, sequence-band, hot-band, and isotopic CO(2) lines, plus N(2)O lines for N(2)H(4). The systematic approach with the LaseRitz program is more global and rigorous than earlier line-by-line studies, permitting calculation of all FIRL wavenumbers to spectroscopic accuracy. Copyright 2000 Academic Press.

Journal Article↗

Oxygen consumption characteristics of porcine hepatocytes.

Oxygen uptake rate (OUR) of hepatocytes is an important parameter for the design of bioartificial liver assist (BAL) devices. Porcine hepatocytes were cultured in a specially constructed measurement chamber with an incorporated mixing system and a Clark polarographic oxygen electrode. Signal noise associated with conventional Clark electrode implementations was circumvented by the combination of real time digital numerical averaging and subsequent finite impulse response (FIR) spectral filtering. Additional software allowed for the automated generation of cellular oxygen consumption coefficients, namely, Vmax and K0.5, adding a high degree of objectivity to parameter determination. Optimization of the above numerical techniques identified a 0.1 Hz/200 data point sample size and a 0.004 Hz cutoff frequency as ideal parameters. Vmax values obtained for porcine hepatocytes during the first two weeks of culture showed a maximal consumption of 0.9 nmole/sec/10(6) cells occurring on Day 4 post seeding, and a gradual decrease to 0.31 nmole/sec/10(6) cells by Day 15. K0.5 values increased from 2 mm Hg on Day 2 to 8 mm Hg by Day 8, with gradual subsequent decrease to 4 mm Hg by Day 15. The Vmax and K0.5 values measured for porcine cells were higher than maximal values for rat hepatocytes (Vmax: 0.43 nmole/sec/10(6) cells, K0.5: 5.6 mmHg) and thus may necessitate significantly altered BAL device design conditions to ensure no oxygen limitations. Finally, these results highlight the need for species specific characterization of cellular function for optimal BAL device implementations.

Animals↗