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At least 577 records · Page 32Linked to original sources
PubMed2004

An antenna triplet sensitiser for 1-acyl-7-nitroindolines improves the efficiency of carboxylic acid photorelease.

Conjugates of a triplet sensitiser (a 4,4'-dialkoxybenzophenone) with 1-acetyl-7-nitroindolines show up to 20-fold enhancement for photorelease of acetate (relative to the same indolines lacking the attached sensitiser) upon irradiation at 300 nm in neutral aqueous solution. The sensitised photolysis can be carried out in the presence of dissolved oxygen and will be applicable to photorelease of other carboxylates. The enhanced efficiency is mediated by an antenna function of the sensitiser, which transfers its triplet energy to populate the reactive, short-lived triplet state of the acylnitroindoline. This energy transfer is confirmed by a large reduction of the sensitiser's triplet lifetime in the conjugates compared with that of the sensitiser alone.

Journal Article↗
PubMed2004

Effect of SiO2 and zeolite surfaces on the excited triplet state of benzophenone, BT; a spectroscopic and kinetic study.

Laser flash photolysis has been used to study the triplet excited state of benzophenone B(T), on various surfaces, SiO(2), zeolites NaY, KY, NaX and KX, and in rigid media at room temperature, polyethylene and polymethylmethacrylate. The studies point to similarities of the spectroscopy and kinetics of B(T) in fluid solution, in a solid matrix (polymers) and on a SiO(2) surface. However, stark differences are observed for B(T) in zeolites where the absorption spectrum mimics that of the protonated ketone, and the reactivities of B(T) with C(6)H(12) and CH(3)OH are an order of magnitude smaller than those in liquid C(6)H(12) and CH(3)OH. Inclusion of ammonia, which blocks acidic sites in the zeolite, produces a triplet spectrum which is similar to that in polar solution. The reactivity of the triplet with ammonia in a zeolite is also comparable to that observed for this reaction in polar solution. These data are discussed in terms of the interaction of benzophenone with acidic sites in the zeolites, and to restrictions placed on the reactants in the zeolite cages. The blocking of the zeolite acidic sites by ammonia produces spectral and kinetic data (reactivity with NH(3)) of the triplet that are comparable to those observed in solution. This is one of the few cases where zeolites inhibit rather than promote reactions of a solute adsorbed in them.

Journal Article↗
PubMed2006

Probing spin-orbit mixing and the singlet-triplet gap in dichloromethylene via Ka-sorted emission spectra.

The magnitude of the singlet-triplet gap in dichloromethylene (CCl(2)) has been a point of controversy in the recent literature. In this study, we report single vibronic level emission spectra of the A(1)B(1)-->X[combining tilde](1)A(1) system of the carbene C(35)Cl(2), which probes the vibrational structure of the X[combining tilde](1)A(1) state up to approximately 10,000 cm(-1) above the vibrationless level. By the careful selection of bands where complete isotope and K(a)' selectivity in excitation was possible, we measured K(a)'-sorted emission spectra in order to test the previously established hypothesis [M.-L. Liu, C.-L. Lee, A. Bezant, G. Tarczay, R. J. Clark, T. A. Miller and B.-C. Chang, Phys. Chem. Chem. Phys., 2003, 5, 1352] that unassigned lines lying above approximately 5,000 cm(-1) belong to levels of the ã(3)B(1) state. The K(a)'-sorting method discriminates between singlet and triplet levels via the (A''-B[combining macron]'') rotational constant, which is significantly larger for pure triplet levels due to the larger equilibrium bond angle. In the region between 3,500 and 9,000 cm(-1) above the vibrationless level of the X[combining tilde](1)A(1) state, we find only a very modest increase in (A''-B[combining macron]''), and approximately 86% of the lines observed between 5,000 and 9,000 cm(-1) can be assigned to X[combining tilde](1)A(1) levels within 3 standard deviations of our Dunham expansion fit, which included more than 140 levels in total. A nearly complete set of Dunham parameters was determined for the C(35)Cl(2) isotopomer, and the X[combining tilde](1)A(1) state term energies up to 4,000 cm(-1) are in excellent agreement with recent variational calculations of Tarczay, et al. [G. Tarczay, T. A. Miller, G, Czakó and A. G. Császár, Phys. Chem. Chem. Phys., 2005, 7, 2881]. Finally, the implication of our results for the singlet-triplet gap in dichloromethylene is discussed.

Journal Article↗
PubMed2006

Photoexcited triplets of dyes in zeolitic nanostructured channels. A time resolved EPR study.

Two dyes (4-nitrostilbene, NST and 4-N,N-dimethylamino-4'-nitrostilbene, DANS) included in zeolites with nanometric channels and different Si : Al ratios have been photoexcited and their triplet state studied by time resolved EPR (TR-EPR). This is the first time that a TR-EPR spectrum of photoexcited triplet states of dyes in zeolites has been observed. The zeolites used were ZSM-5 and mordenite, with either protons or lithium as charge compensating ions, and the aluminium-free porosil. The ZFS parameters and the polarized spin populations have been obtained, and compared with those obtained in glassy solutions and in the organic nanostructured matrix perhydrotriphenylene (PHTP). For (3)DANS in neutral solvents and in PHTP the dimethylamino group is pi conjugated, whereas only its acid form is detected in all the zeolites. In the latter the spectra of the radical cations formed by spontaneous oxidation have also been observed both by cw-EPR and TR-EPR, the last spectra being spin polarized in emission. The mobility of the triplets is discussed, taking into account the spin polarization of the radical cations indicating a strong radical-triplet interaction.

Chemistry, Physical↗
PubMed2005

Effects of triplet exciton confinement induced by reduced conjugation length in polyspirobifluorene copolymers.

Using gated optical spectroscopy at low temperatures, a polyspirobifluorene has been compared with an alternating carbazole-spirobifluorene copolymer in which the backbone conjugation is interrupted due to meta coupling of the carbazole moieties. In the copolymer both singlet and triplet energy levels are blueshifted by 130 meV with respect to the homopolymer, resulting in an unaltered singlet-to-triplet splitting. Though the barrier for triplet exciton migration increases from 4.4 to 6.0 meV for the copolymer compared to the homopolymer, it still remained low enough to ensure efficient triplet diffusion at ambient temperature.

Journal Article↗
PubMed2005

Triplet correlations in the quantum hard-sphere fluid.

A study of three-particle correlations in the quantum hard-sphere fluid far from exchange is presented. The three types of triplet correlations in a monatomic quantum fluid (instantaneous, linear response, and centroids) are analyzed by utilizing (a) the density derivatives of the corresponding quantum pair radial correlation functions, (b) closures for triplet functions, and (c) path-integral Monte Carlo (PIMC) simulations that have concentrated on the fixing of equilateral and isosceles correlations. For the sake of comparison, the classical hard-sphere fluid is also studied with tools (a) and (b) and Monte Carlo (MC) simulations. The relative usefulness of density derivatives combined with closures is discussed in light of the PIMC and MC results. The exact PIMC correlations between quantum triplets show features that resemble those known to occur at the pair level, such as the close proximity between the instantaneous and the three-particle linear response, the much more pronounced features in centroid triplet structures, and the same global patterns with changes in density and temperature such as the outward shifts of the structures with decreasing temperature and density.

Journal Article↗
PubMed1979

Triplet states in photosystem I of spinach chloroplasts and subchloroplast particles.

We report light-induced electron paramagnetic resonance triplet spectra from samples of chloroplasts or digitonin photosystem I particles that depend upon the dark redox state of the bound acceptors of photosystem I. If the reaction centers are prepared in the redox state P-700 A X- FdB-FdA-, then upon illumination at 11K we observe a polarized chlorophyll triplet species which we interpret as arising from radical pair recombination between P-700+ and A-. This chlorophyll triplet is apparently the analog of the PR state of photosynthetic bacteria [Parson, W.W. & Cogdell, R.J. (1975) Biochim. Biophys. Acta 416, 105-149]. If the reaction centers are prepared in the dark redox state P-700 A X FdB-FdA-, then upon illumination at 11K we observe a different triplet species of uncertain origin, possibly pheophytin or carotenoid. This species is closely associated with the photosystem I reaction center and it traps excitation when P-700 is oxidized.

Chloroplasts↗
PubMed1987

Exciton interactions in reaction centers of the photosynthetic bacterium Rhodopseudomonas viridis probed by optical triplet-minus-singlet polarization spectroscopy at 1.2 K monitored through absorbance-detected magnetic resonance.

Linear dichroic triplet-minus-singlet [LD-(T - S)] spectra of isolated reaction centers of the photosynthetic bacterium Rhodopseudomonas viridis have been measured at 1.2 K with the linear dichroic absorbance-detected magnetic resonance (LD-ADMR) technique for two mutually perpendicular directions of the preferred axis. The LD-(T - S) spectra have been calibrated with respect to the corresponding (T - S) spectra as a function of applied microwave power and quantitatively interpreted using the formalism of photoselection. The transition moment of the optical transition at 1007 nm makes angles of 72 degrees +/- 5 degrees and 15 degrees +/- 5 degrees with the triplet x and y spin axes, respectively. The experimental spectra have been simulated employing exciton theory and using the atomic coordinates of the resolved crystal structure of the reaction center. The spectral interpretation yields the angles between the transition moments of the various absorption bands of the (T - S) spectra and the triplet axes, and between the moments themselves, with the triplet state of the primary donor (3)P localized on the P-bacteriochlorophyll b in the "active" (L) chain.

Journal Article↗
PubMed1993

Triplet structure of von Willebrand factor reflects proteolytic degradation of high molecular weight multimers.

High molecular weight (HMW) and low molecular weight (LMW) forms of von Willebrand factor (vWF) were isolated from normal human plasma in the presence of protease inhibitors. HMW and LMW vWF preparations were subjected to reduction of interdimeric disulfide bridges under mild reducing conditions. Following sodium dodecyl sulfate electrophoresis in 3% agarose, the vWF bands were detected by immunoblotting with a polyclonal rabbit anti-vWF antiserum as well as with two monoclonal antibodies directed against epitopes located in the NH2-terminal (MAb 418) or in the COOH-terminal (MAb 9) region of the vWF subunit. Our results suggest that the slowest migrating band of the dimeric triplet set of LMW vWF represents an asymmetric structure composed of an intact subunit to which one NH2-terminal and one COOH-terminal fragment are linked by disulfide bridges. The intermediate band of the first triplet of LMW vWF strongly reacted with MAb 9 but not with MAb 418, indicating that it represents a dimer of COOH-terminal fragments. The fastest migrating band of the same triplet is apparently a dimer of the NH2-terminal fragments because it reacted with MAb 418 but not with MAb 9. Each next higher family of triplets seems to contain one more asymmetric fragment of dimeric size. These results are compatible with a model according to which LMW forms of vWF are derived from HMW vWF by proteolytic cleavage in the circulating blood.

Chromatography, Gel↗
PubMed1996

Cloning, characterization, and properties of seven triplet repeat DNA sequences.

Several neuromuscular and neurodegenerative diseases are caused by genetically unstable triplet repeat sequences (CTG.CAG, CGG.CCG, or AAG.CTT) in or near the responsible genes. We implemented novel cloning strategies with chemically synthesized oligonucleotides to clone seven of the triplet repeat sequences (GTA.TAC, GAT.ATC, GTT.AAC, CAC.GTG, AGG.CCT, TCG.CGA, and AAG.CTT), and the adjoining paper (Ohshima, K., Kang, S., Larson, J. E., and Wells, R. D.(1996) J. Biol. Chem. 271, 16784-16791) describes studies on TTA.TAA. This approach in conjunction with in vivo expansion studies in Escherichia coli enabled the preparation of at least 81 plasmids containing the repeat sequences with lengths of approximately 16 up to 158 triplets in both orientations with varying extents of polymorphisms. The inserts were characterized by DNA sequencing as well as DNA polymerase pausings, two-dimensional agarose gel electrophoresis, and chemical probe analyses to evaluate the capacity to adopt negative supercoil induced non-B DNA conformations. AAG.CTT and AGG.CCT form intramolecular triplexes, and the other five repeat sequences do not form any previously characterized non-B structures. However, long tracts of TCG.CGA showed strong inhibition of DNA synthesis at specific loci in the repeats as seen in the cases of CTG.CAG and CGG.CCG (Kang, S., Ohshima, K., Shimizu, M., Amirhaeri, S., and Wells, R. D.(1995) J. Biol. Chem. 270, 27014-27021). This work along with other studies (Wells, R. D.(1996) J. Biol. Chem. 271, 2875-2878) on CTG.CAG, CGG.CCG, and TTA.TAA makes available long inserts of all 10 triplet repeat sequences for a variety of physical, molecular biological, genetic, and medical investigations. A model to explain the reduction in mRNA abundance in Friedreich's ataxia based on intermolecular triplex formation is proposed.

Base Sequence↗
PubMed1996

TTA.TAA triplet repeats in plasmids form a non-H bonded structure.

CTG.CAG, CGG.CCG, and AAG.CTT triplet repeats proximal to or in disease genes expand by a non-Mendelian genetic process to cause several human hereditary syndromes. As part of our physical, biological, and genetic studies on the 10 possible triplet repeats, we discovered that the TTA.TAA repeat, isolated from the upstream region of the variant surface glycoprotein gene of Trypanosoma brucei, shows a propensity to adopt a non-H bonded structure under appropriate conditions. The other nine triplet repeat sequences do not exhibit this property. (TTA.TAA)n, where n = 90, 60, 30, and 18, cloned into pUC19 was studied by chemical and enzymatic probes as well as two-dimensional gel electrophoretic analyses under a variety of conditions. The helix opening was observed for all four inserts in supercoiled plasmids as a function of temperature, pH, metal ions, and buffer conditions using OsO4, diethyl pyrocarbonate, and chloroacetaldehyde probes. This unusual property of the TTA.TAA repeat suggests that it plays a different role from the other nine triplet repeats in gene expression.

Base Sequence↗
PubMed1996

CTG triplet repeats from human hereditary diseases are dominant genetic expansion products in Escherichia coli.

The relative ability of the 10 triplet repeat sequences to be expanded in Escherichia coli was determined. Surprisingly, CTG tracts are expanded at least 8 times more frequently than any of the other nine triplets. Low levels of expansion were found also for CGG, GTG, and GTC. Thus, the structure of the CTG repeats and/or their utilization by the DNA synthetic systems in vivo must be quite different from the other triplets. These data further validate this genetically defined system for elucidating molecular mechanisms of expansion and may explain why most triplet repeat hereditary neuromuscular and neurodegenerative disease genes contain CTG repeats.

Base Sequence↗
PubMed2001

Validated zinc finger protein designs for all 16 GNN DNA triplet targets.

The Cys(2)-His(2)-type zinc finger DNA-binding proteins can be engineered to bind specifically to many different DNA sequences. A single zinc finger typically binds to a 3-4-base pair DNA subsite. One strategy for design is to identify highly specific fingers that recognize each of the 64 possible DNA triplets. We started with a subgroup of the 64 triplets, the GNN-binding fingers. The GNN-binding fingers have been examined in several studies, but previous studies did not produce specific fingers for all of the 16 GNN triplets. These previous studies did not provide any information on the possible positional or context effects on the performance of these fingers. To identify the most specific design and take the possible positional effects into consideration, we did a large-scale site selection experiment on our GNN designs. From this study, we identified very specific fingers for 14 of the 16 GNN triplets, demonstrating for the first time a clear positional dependence for many of the designs. Further systematic specificity study reveals that the in vivo functionality of these zinc finger proteins in a reporter assay depends on their binding affinities to their target sequences, thus giving a better understanding of how these zinc finger proteins might function inside cells.

Amino Acid Sequence↗
PubMed2005

Srs2 helicase of Saccharomyces cerevisiae selectively unwinds triplet repeat DNA.

Trinucleotide repeat expansions are the mutational cause of at least 15 genetic diseases. In vitro, single-stranded triplet repeat DNA forms highly stable hairpins, depending on repeat sequence, and a strong correlation exists between hairpin-forming ability and the risk of expansion in vivo. Hairpins are viewed, therefore, as likely mutagenic precursors to expansions. If a helicase unwinds the hairpin, it would be less likely to expand. Previous work indicated that yeast Srs2 DNA helicase selectively blocks expansions in vivo (Bhattacharyya, S., and Lahue, R. S. (2004) Mol. Cell. Biol. 24, 7324-7330). For example, srs2 mutants, including an ATPase-defective point mutant, exhibit substantially higher expansion rates than wild type controls. In contrast, mutation of another helicase gene, SGS1, had little effect on expansion rates. These findings prompted the idea that Srs2 might selectively unwind triplet repeat hairpins. In this study, DNA helicase assays were performed with purified Srs2, Sgs1, and Escherichia coli UvrD (DNA helicase II). Srs2 shows substantially faster unwinding than Sgs1 or UvrD on partial duplex substrates containing (CTG) x (CTG) sequences, provided that Srs2 encounters the triplet repeat DNA immediately on entering the duplex. Srs2 was also faster at unwinding (CAG) x (CAG)- and (CCG) x (CCG)-containing substrates and an intramolecular (CTG) x (CTG) hairpin. In contrast, all three enzymes unwind about equally well control substrates with either Watson-Crick base pairs or mismatched substrates with non-CNG repeats. Overall, the selective unwinding activity of Srs2 on triplet repeat hairpin DNA helps explain the genetic evidence that Srs2, not the RecQ homolog Sgs1, is a preferred helicase for preventing expansions.

Adenosine Triphosphatases↗
PubMed1979

The triplet-state charge-transfer reaction between p-nitroacetophenone and guanosine monophosphate: a possible mechanism for electron-affinic radiosensitization.

Using flash photolysis it has been observed that the triplet state of p-nitroacetophenone reacts rapidly with guanosine monophosphate to give the p-nitroacetophenone radical anion, and presumably the guanine radical cation is also formed in this reaction. From this observation, it is predicted by theory that a similar reaction will occur between p-nitroacetophenone and the triplet state of guanosine monophosphate. Because guanine is excited to its triplet state when DNA is irradiated with X-rays, it is suggested that the charge transfer reaction between p-nitroacetophenone and the triplet state of guanine contributes to the radiosensitizing action of p-nitroacetophenone.

Acetophenones↗
PubMed2002

Crystal structure of actinomycin D bound to the CTG triplet repeat sequences linked to neurological diseases.

The potent anticancer drug actinomycin D (ActD) acts by binding to DNA GpC sequences, thereby interfering with essential biological processes including replication, transcription and topoisomerase. Certain neurological diseases are correlated with expansion of (CTG)n trinucleotide sequences, which contain many contiguous GpC sites separated by a single base pair. In order to characterize the binding of ActD to CTG triplet repeat sequences, we carried out heat denaturation and CD analyses, which showed that adjacent GpC sequences flanking a T:T mismatch are preferred ActD-binding sites, and that ActD binding results in a conformational transition to A-type structure. The structural basis of the strong binding of ActD to neighboring GpC sites flanking a T:T mismatch was provided by the crystal structure of ActD bound to ATGCTGCAT, which contains a CTG triplet sequence. Binding of two ActD molecules to GCTGC causes a kink in the DNA helix. In addition, using a synthetic self-priming DNA model, 5'-(CAG)4(CTG)(16)-3', we observed that ActD can trap the cruciform or duplexes of (CTG)n and interfere with the expansion process of CTG triplet repeats as shown by gel electrophoretic expansion assay. Our results may provide the possible biological consequence of ActD bound to CTG triplet repeat sequences.

Antibiotics, Antineoplastic↗
PubMed2001

Triplet energies of pi-conjugated polymers.

Using pulse radiolysis and triplet energy transfer has enabled us to measure the triplet energies in a broad range of different pi-conjugated polymers. In all cases we find that the 1 (3)B(u) is of order 0.6 to 1 eV below the 1 (1)B(u), indicative of localized triplet states with strong electron-electron correlation. We also observe that the 1 (1)A(g)-1 (3)B(u) gap decreases linearly as the 1 (1)A(g)-1 (1)B(u) gap decreases even though polymers with very different structure have been studied. This surprising result suggests that polymers with singlet gap <1.3 eV will have a triplet ground state.

Journal Article↗
PubMed1999

Feasibility study for the measurement of a large set of triplet phases from a small protein.

The feasibility of measuring a set of triplet phases large enough to solve the structure of a small protein has been evaluated. A total of about 850 triplet phases have been measured from the tetragonal form of hen egg-white lysozyme. From these triplet phases, about 750 single phases can be derived. The experimental details of these measurements as well as the results, the values of the measured triplet phases, are reported. Additional experimental data from other small proteins are also presented.

Crystallization↗