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Substantial effective sample sizes were required for external validation studies of predictive logistic regression models.

BACKGROUND AND OBJECTIVES: The performance of a prediction model is usually worse in external validation data compared to the development data. We aimed to determine at which effective sample sizes (i.e., number of events) relevant differences in model performance can be detected with adequate power. METHODS: We used a logistic regression model to predict the probability that residual masses of patients treated for metastatic testicular cancer contained only benign tissue. We performed standard power calculations and Monte Carlo simulations to estimate the numbers of events that are required to detect several types of model invalidity with 80% power at the 5% significance level. RESULTS: A validation sample with 111 events was required to detect that a model predicted too high probabilities, when predictions were on average 1.5 times too high on the odds scale. A decrease in discriminative ability of the model, indicated by a decrease in the c-statistic from 0.83 to 0.73, required 81 to 106 events, depending on the specific scenario. CONCLUSION: We suggest a minimum of 100 events and 100 nonevents for external validation samples. Specific hypotheses may, however, require substantially higher effective sample sizes to obtain adequate power.

Humans↗

Equally valid models gave divergent predictions for mortality in acute myocardial infarction patients in a comparison of logistic [corrected] regression models.

OBJECTIVE: Models that predict mortality after acute myocardial infarction (AMI) contain different predictors and are based on different populations. We studied the agreement and validity of predictions for individual patients. STUDY DESIGN AND SETTING: We compared predictions from five predictive logistic regression models for short-term mortality after AMI. Three models were developed previously, and two models were developed in the GUSTO-I data, where all five models were applied (n =40,830, 7.0% 30-day mortality). Agreement was studied with weighted kappa statistics of categorized predictions. Validity was assessed by comparing observed frequencies with predictions (indicating calibration) and by the area under the receiver operating characteristic curve (AUC), indicating discriminative ability. RESULTS: The predictions from the five models varied considerably for individual patients, with low agreement between most (kappa <0.6). Risk predictions from the three previously developed models were on average too high, which could be corrected by re-calibration of the model intercept. The AUC ranged from 0.76-0.78 and increased to 0.78-0.79 with re-estimated regression coefficients that were optimal for the GUSTO-I patients. The two more detailed GUSTO-I based models performed better (AUC approximately 0.82). CONCLUSION: Models with different predictors may have a similar validity while the agreement between predictions for individual patients is poor. The main concerns in the applicability of predictive models for AMI should relate to the selected predictors and average calibration.

Aged↗

Automatic seizure detection in EEG using logistic regression and artificial neural network.

The detection of epileptiform discharges in the EEG is an important component in the diagnosis of epilepsy. In this study, multiple signal classification (MUSIC), autoregressive (AR) and periodogram methods were used to get power spectra in patients with absence seizure. The EEG power spectra were used as an input to a classifier. We introduce two fundamentally different approaches for designing classification models (classifiers); the traditional statistical method based on logistic regression (LR) and the emerging computationally powerful techniques based on artificial neural networks (ANNs). LR as well as multilayer perceptron neural network (MLPNN) based classifiers were developed and compared in relation to their accuracy in classification of EEG signals. The comparisons between the developed classifiers were primarily based on analysis of the receiver operating characteristic (ROC) curves as well as a number of scalar performance measures pertaining to the classification. The MLPNN based classifier outperformed the LR based counterpart. Within the same group, the MLPNN-based classifier was more accurate than the LR-based classifier.

Algorithms↗

Predictors for response to rehabilitation in patients with hip or knee osteoarthritis: a comparison of logistic regression models with three different definitions of responder.

OBJECTIVE: To identify pre-treatment predictors of who will benefit from a 3-4-week comprehensive rehabilitation intervention in patients with osteoarthritis (OA) of the knee or hip. METHODS: A prospective cohort study with assessments at admission to the clinic and after 6 months was conducted. Two hundred and fifty patients from the rehabilitation clinic Rehaclinic Zurzach, Switzerland, were included. Three different measures of response to a 3-4-week comprehensive rehabilitation intervention were used: one indirect measure (minimal clinically important difference (MCID) in the Western Ontario and McMaster Universities Osteoarthritis Index (WOMAC) global score=18% improvement), one direct measure (transition question) and a combination of both criteria. Responders were predicted by a sequential logistic regression analysis with nine personal variables, five lifestyle risk factors, seven psychological status variables and the WOMAC global baseline score. RESULTS: The set of statistically significant predictors was dependent on the definition of response. The comparison of predictors that were statistically significant in any of the prediction models showed similar odds ratios (ORs) for the majority of predictors across three regression models with the different response definitions as dependent variable. Female gender, absence of depressive symptoms (dep), history of complementary medicine (cm) and low comorbidity (com) were the most stable predictors and had ORs above 2.0 (female) and above 1.5 (dep, cm, com) across the three regression models with different response definitions. CONCLUSION: A set of predictors for the outcome of rehabilitation in patients with OA was identified. If these predictors could be confirmed in future research, this knowledge might help to adopt and individualize the treatment of patients who are, at present, less likely to respond.

Aged↗

Asymptotic behaviour of solutions to abstract logistic equations.

We analyze the asymptotic behaviour of solutions of the abstract differential equation u'(t)=Au(t)-F(u(t))u(t)+f. Our results are applicable to models of structured population dynamics in which the state space consists of population densities with respect to the structure variables. In the equation the linear term A corresponds to internal processes independent of crowding, the nonlinear logistic term F corresponds to the influence of crowding, and the source term f corresponds to external effects. We analyze three separate cases and show that for each case the solutions stabilize in a way governed by the linear term. We illustrate the results with examples of models of structured population dynamics -- a model for the proliferation of cell lines with telomere shortening, a model of proliferating and quiescent cell populations, and a model for the growth of tumour cord cell populations.

Algorithms↗

Environmentally induced dispersal under heterogeneous logistic growth.

We consider a single-species model which is composed of several habitats connected by linear migration rates and having logistic growth. A spatially varying, temporally constant environment is introduced by the non-homogeneity of its carrying capacity. Under this condition any type of purely diffusive behavior, characterized in our model by symmetric migration rates, produces an unbalanced population distribution, i.e. some locations receive more individuals than can be supported by the environmental carrying capacity, while others receive less. Using an evolutionarily stable strategy (ESS) approach we show that an asymmetric migration mechanism, induced by the heterogeneous carrying capacity of the environment, will be selected. This strategy balances the inflow and outflow of individuals in each habitat (balanced dispersal), as well as 'balancing' the spatial distribution relative to variation in carrying capacity (the Ideal Free Distribution from habitat selection theory). We show that several quantities are maximized or minimized by the evolutionarily stable dispersal strategy.

Animal Migration↗

A modified logistic model to describe gadolinium kinetics in breast tumors.

A five-parameter modified logistic equation is presented that describes the signal enhancement in magnetic resonance dynamic contrast enhanced imaging (MRI-DCE). In this heuristic model, P(1) approximates the baseline signal, P(2) is related to the magnitude of the peak signal enhancement, P(3) is the approximate time of the maximum rate of increase of signal, P(4) is related to the maximum rate of signal enhancement, and P(5) is the terminal slope of the signal enhancement curve. Six breast tumors were studied that exhibited diverse patterns of signal enhancement, and in each case, estimated model parameters were well identified. Three of the model parameters, P(2), P(4) and P(5) describe attributes of the signal enhancement curve that have previously been shown to have diagnostic value with respect to breast cancer. Procedures for using the primary model parameters to derive a number of secondary parameters that may also have diagnostic value are discussed. Sensitivity analysis shows that the signal enhancement curve is highly sensitive to P(3) in the region of the signal intensity curve associated with rapid uptake of the contrast reagent. Consequently, frequent signal sampling in this time domain is indicated to enable identification of P(3) and sensitive fitting of the signal intensity curve. The advantages of this heuristic model compared to commonly used compartmental modeling approaches are discussed.

Breast Neoplasms↗

Quality control using a multilevel logistic model for the Danish pig Salmonella surveillance antibody-ELISA programme.

In Denmark, the level of Salmonella infection in pig herds is monitored with a surveillance programme using an indirect antibody ELISA. Our purpose with the present study was to determine whether sample results from the programme were useful in the quality control of this ELISA. Test results from the year 2003, in which the laboratory experienced a technical problem with an automatic microtitre-plate washing machine, were examined statistically. We chose 3 months for the analysis: January, where the problem was moderate, June with the problem more serious, and November, where the problem had been solved. A logistic analysis was carried out with outcome 0 for a negative test result and 1 for a positive test result. Row and column on the microtitre plates, multiprobe robot, and their interactions were included as fixed effects, and date, plate, and slaughterhouse were included as random effects. Backward elimination was carried out using alpha=0.05 to achieve a final model for each month. The row and the column were significant in January and June, and a robot effect was also included in the model for January. In June, an interaction between row and column was identified. In November, none of the fixed effects was significant. Breaking the months January and June into shorter time intervals showed that the row and column effects were significant also when data were from only 1 week, whereas the robot main effect was not significant in most periods and the interaction effects were not significant throughout. Analysis of the test results from the wells with test samples gave good information on systematic errors across the microtitre plates, and severe errors appeared significant even when data from short time periods were used.

Animals↗

Extinction times and moment closure in the stochastic logistic process.

We investigate the statistics of extinction times for an isolated population, with an initially modest number M of individuals, whose dynamics are controlled by a stochastic logistic process (SLP). The coefficient of variation in the extinction time V is found to have a maximum value when the death and birth rates are close in value. For large habitat size K we find that Vmax is of order K1/4 / M1/2, which is much larger than unity so long as M is small compared to K1/2. We also present a study of the SLP using the moment closure approximation (MCA), and discuss the successes and failures of this method. Regarding the former, the MCA yields a steady-state distribution for the population when the death rate is low. Although not correct for the SLP model, the first three moments of this distribution coincide with those calculated exactly for an adjusted SLP in which extinction is forbidden. These exact calculations also pinpoint the breakdown of the MCA as the death rate is increased.

Animals↗

Predicting pilot-error incidents of US airline pilots using logistic regression.

In a population of 70,164 airline pilots obtained from the Federal Aviation Administration, 475 males and 22 females had pilot-error incidents in the years 1986-1992. A simple chi-squared test revealed that female pilots employed by major airlines had a significantly greater likelihood of pilot-error incidents than their male colleagues. In order to control for age, experience (total flying hours), risk exposure (recent flying hours) and employer (major/non-major airline) simultaneously, the author built a model of male pilot-error incidents using logistic regression. The regression analysis indicated that youth, inexperience and non-major airline employer were independent contributors to the increased risk of pilot-error incidents. The results also provide further support to the literature that pilot performance does not differ significantly between male and female airline pilots.

Accidents, Aviation↗

Can patient characteristics predict the outcome of endoscopic evaluation of iron deficiency anemia: a multiple logistic regression analysis.

BACKGROUND: The purpose of this study was to identify clinical and biochemical variables that predict the outcome of upper/lower endoscopy in outpatients with iron deficiency anemia and to determine which endoscopic procedure should be performed first. METHODS: Ninety-eight patients (74 women, 24 men; mean age 55 years) with iron deficiency anemia referred from the hematology department were interviewed and responded to a questionnaire that included clinical and biochemical variables, and underwent EGD (with biopsies) and colonoscopy. The endoscopic findings were recorded as presence/absence of GI cancer, upper/lower GI tract lesions and bleeding/non-bleeding-associated GI lesions. A multiple logistic regression analysis was applied to identify variables significantly related with the outcome of the investigations. Multiple analyses were performed so that a Bonferroni correction for multiple testing removed significance except where p<0.01. RESULTS: A likely cause of iron deficiency anemia was found in 86.7% of patients. The risk factors for GI malignancies were: male gender (OR 7.5: 95% CI[1.7, 31.9]; p<0.01), advanced age (OR 1.1/y: 95% CI[1, 1.2]; p<0.01), and lower mean corpuscular volume (OR 1.1/unit: 95% CI[1, 1.2]; p<0.002). The risk factors for bleeding-related diseases were the following: greater age (OR 1.1/y: 95% CI[1.1, 1.2]; p<0.001), absence of lower-GI tract symptoms (OR 4.7: 95% CI[1.3, 16.6]; p<0.05), and a positive fecal occult blood test (OR 4.1: 95% CI[1.2, 14.3]; p<0.05). The risk factors for non-bleeding-related GI tract diseases were the following: negative fecal occult blood test (OR 4.5: 95% CI[1.16, 20]; p<0.05) and higher Hb level (OR 1.4/unit: 95% CI[1.1, 1.8]; p<0.05). CONCLUSIONS: For non-hospitalized patients with iron deficiency anemia, colonoscopy should be the initial investigation in those greater than 50 years of age, particularly men, and those without upper-GI tract symptoms and with lower values for mean corpuscular volume and Hb. EGD should be performed first in younger patients, particularly those with a mild decrease in Hb and a negative fecal occult blood test.

Age Factors↗

Regional distribution of bovine Neospora caninum infection in the German state of Rhineland-Palatinate modelled by Logistic regression.

To obtain a rapid overview over the distribution of bovine Neospora caninum-infections in the German state of Rhineland-Palatinate, an ELISA to determine specific bovine antibodies against a p38 surface antigen of N. caninum tachyzoites was modified to examine bulk milk samples from cattle herds. Experimental bulk milk samples were used to demonstrate that the seroprevalence in a group of animals can be estimated with this ELISA. A cut-off was selected for the specific detection of herds having a seroprevalence > or =10%. About 90% of the dairy herds located in Rhineland-Palatinate were examined. An overall prevalence of bulk milk-positive herds of 7.9% (95% confidence interval 7.0-8.9%), respectively, was determined. Major regional differences in the distribution of bulk milk-positive herds were observed. Prevalences were higher in regions with an increased degree of urbanisation. Logistic regression was applied to model the prevalence of bulk milk-positive herds on a district and city level. Variables describing the dog density, mean temperature in July, mean temperature in January and the total yearly precipitation in districts and cities were able to explain most of the observed variability in the regional prevalences. Our results provide evidence that in addition to risk factors related to individual farms also risk factors related to the farm location such as dog density in the surrounding and climate factors are important in the epidemiology of bovine neosporosis.

Animals↗

A logistic branching process for population genetics.

A logistic (regulated population size) branching process population genetic model is presented. It is a modification of both the Wright-Fisher and (unconstrained) branching process models, and shares several properties including the coalescent time and shape, and structure of the coalescent process with those models. An important feature of the model is that population size fluctuation and regulation are intrinsic to the model rather than externally imposed. A consequence of this model is that the fluctuation in population size enhances the prospects for fixation of a beneficial mutation with constant relative viability, which is contrary to a result for the Wright-Fisher model with fluctuating population size. Explanation of this result follows from distinguishing between expected and realized viabilities, in addition to the contrast between absolute and relative viabilities.

Animals↗

On the quasi-stationary distribution of the stochastic logistic epidemic.

An approximation is derived for the quasi-stationary distribution of the stochastic logistic epidemic in the intricate case where the transmission factor R0 lies in the transition region near the deterministic threshold value 1. An approximation for the expected time to extinction from quasi-stationarity in the same parameter region is also given.

Endemic Diseases↗

Moment closure and the stochastic logistic model.

The quasi-stationary distribution of the stochastic logistic model is studied in the parameter region where its body is approximately normal. Improved asymptotic approximations of its first three cumulants are derived. It is shown that the same results can be derived with the aid of the moment closure method. This indicates that the moment closure method leads to expressions for the cumulants that are asymptotic approximations of the cumulants of the quasi-stationary distribution.

Birth Rate↗

Validation of the paediatric logistic organ dysfunction (PELOD) score: prospective, observational, multicentre study.

BACKGROUND: Multiple organ dysfunction syndrome is more frequent than death in paediatric intensive care units. Estimation of the severity of this syndrome could be a useful additional outcome measure in clinical trials in such units. We aimed to validate the paediatric logistic organ dysfunction (PELOD) score and estimate its validity when recorded daily (dPELOD). METHODS: We did a prospective, observational, multicentre cohort study in seven multidisciplinary, tertiary-care paediatric intensive care units of university-affiliated hospitals (two French, three Canadian, and two Swiss). We included 1806 consecutive patients (median age 24 months; IQR 5-90). PELOD score includes six organ dysfunctions and 12 variables and was recorded daily. For each variable, the most abnormal value each day and during the whole stay were used in calculating the dPELOD and PELOD scores, respectively. Outcome was vital status at discharge. We used Hosmer-Lemeshow goodness-of-fit tests to evaluate calibration and areas under receiver operating characteristic curve (AUC) to estimate discrimination. FINDINGS: 370 (21%) patients had no organ dysfunction, 471 (26%) had one, 457 (25%) had two, and 508 (28%) had three or more. Case fatality rate was 6.4% (115 deaths). PELOD score was significantly higher in non-survivors (mean 31.0 [SE 1.2]) than survivors (9.4 [0.2]; p<0.0001). Calibration (p=0.54) and discrimination (AUC=0.91, SE=0.01) of PELOD and dPELOD (p> or =0.39; AUC> or =0.79) scores were good. INTERPRETATION: PELOD and dPELOD scores are valid outcome measures of the severity of multiple organ dysfunction syndrome in paediatric intensive care units; their use should significantly reduce the sample size required to complete clinical trials in critically ill children.

Adolescent↗

Modelling the combined temperature and salt (NaCl) limits for growth of a pathogenic Escherichia coli strain using nonlinear logistic regression.

A broth-based method is used to determine if exponential phase Escherichia coli R31, an STEC, is able to grow within 50 days under various combinations of sub-optimal temperatures and salt concentrations. From these data, the growth limits for combinations of temperature (7.7-37.0 degrees C) and water activity (0.943-0.987; NaCl as humectant) are defined and modelled using a nonlinear logistic regression model. That form of model is able to predict the combinations of salt concentration/water activity and temperature that will prevent the growth of E. coli R31 with selected levels of confidence. The model fitted the data with an approximate concordance rate of 97.3%. The minimum water activity that permitted growth occurred in the range 25-30 degrees C, the temperature range which optimises cell yield. At temperatures below this range the minimum water activity which allowed growth increased with decreasing temperature.

Culture Media↗

Some examples of, and some problems with, the use of nonlinear logistic regression in predictive food microbiology.

A new technique, nonlinear logistic regression, is described for modelling binomially distributed data, i.e., presence/absence data where growth is either observed or not observed, for applications in predictive food microbiology. Some examples of the successful use of this technique are presented, where the controlling factors are temperature, water activity, pH and the concentration of lactic acid, a weakly dissociating organic acid. Generally speaking, good-fitting models were obtained, as evidenced using various performance measures and goodness-of-fit statistics. As may be expected with a new statistical technique, some problems were encountered with the implementation of the modelling approach and these are discussed.

Escherichia coli↗