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PubMed1990

A model for the antagonist binding site on the adenosine A1 receptor, based on steric, electrostatic, and hydrophobic properties.

With the aid of molecular modeling, both adenosine and adenosine A1 receptor antagonists belonging to various chemical classes were compared with respect to their minimum-energy conformations and molecular electrostatic potentials, as computed by the semiempirical molecular orbital program MOPAC. Distinct steric and electrostatic similarities between adenosine and the prototypic adenosine antagonist theophylline are evident when both compounds are superimposed, with theophylline in a so-called flipped orientation. Similar patterns were found for all other A1 antagonists investigated in this study. A model for the antagonist binding site on the adenosine A1 receptor, based on steric, electrostatic, and hydrophobic properties contributing to potency, is proposed.

Adenosine↗
PubMed2006

Modeling subtype-selective agonists binding with alpha4beta2 and alpha7 nicotinic acetylcholine receptors: effects of local binding and long-range electrostatic interactions.

The subtype-selective binding of 14 representative agonists with alpha4beta2 and alpha7 nicotinic acetylcholine receptors (nAChRs) has been studied by performing homology modeling, molecular docking, geometry optimizations, and microscopic and phenomenological binding free energy calculations. All of the computational results demonstrate that the subtype selectivity of the agonists binding with alpha4beta2 and alpha7 7 nAChRs is affected by both local binding and long-range electrostatic interactions between the receptors and the protonated structures of the agonists. The effects of the long-range electrostatic interactions are mainly due to the distinct difference in the net charge of the ligand-binding domain between the two nAChR subtypes. For the alpha4beta2-selective agonists examined, the microscopic binding modes with the alpha4beta2 nAChR are very similar to the corresponding modes with the alpha7 nAChR, and therefore, the subtype selectivity of these agonists binding with alpha4beta2 and alpha7 nAChRs is dominated by the long-range electrostatic interactions. For the alpha7-selective agonists, their microscopic binding modes with the alpha7 nAChR are remarkably different from those with the alpha4beta2 nAChR so that the local binding (including the hydrogen bonding and cation-pi interactions) with the alpha7 nAChR is much stronger than that with the alpha4beta2 nAChR. The calculated phenomenological binding free energies are in good agreement with available experimental data for the relative binding free energies concerning the subtype selectivity of agonists binding with the two different nAChR subtypes. The fundamental insights obtained in the present study should be valuable for future rational design of potential therapeutic agents targeted to specific nAChR subtypes.

Amino Acid Sequence↗
PubMed2000

Electrostatic and electrophilic catalysis in the reductive cleavage of alkyl aryl ethers. The influence of ion pairing on the regioselectivity

Electrophilic and electrostatic catalysis have been identified as distinct contributions that affect the reactivity of radical anions in the reductive cleavage of alkyl aryl ethers. Two modes of mesolytic scission of these radical anions are possible: homolytic (dealkylation, a thermodynamically favored but kinetically forbidden process) and heterolytic (dealkoxylation). From our studies (alkali metal reductions, electrochemical studies, use of substrates with a preformed positive charge in certain positions of their structure) it can be concluded that the heterolytic scission is very much dependent on the electrophilic assistance by the counterion and it is only observed in contact ionic pairs with unsaturated cations (electrophilic catalysis). On the other hand, the homolytic scission is observed in solvent-separated ionic pairs, and it is especially efficient when the pair has a controlled topology with a tetralkylammonium cation (saturated cation) near the oxygen atom. The effect of the cation has, in this case, electrostatic origin (electrostatic catalysis), probably lowering the barrier of the intramolecular pi-sigma electron transfer process and thus reducing the kinetic control of the reaction in such a way that the thermodynamically more favorable process is produced.

Journal Article↗
PubMed2005

Local electrostatic field induced by the carotenoid bound to the reaction center of the purple photosynthetic bacterium Rhodobacter sphaeroides.

Electroabsorption (EA) spectra were recorded in the region of the reaction center (RC) Qy absorption bands of bacteriochlorophyll (Bchl) and bacteriopheophytin, to investigate the effect of carotenoid (Car) on the electrostatic environment of the RCs of the purple bacterium Rhodobacter (Rb.) sphaeroides. Two different RCs were prepared from Rb. sphaeroides strain R26.1 (R26.1-RC); R26.1 RC lacking Car and a reconstituted RC (R26.1-RC+ Car) prepared by incorporating a synthetic Car (3,4-dihydrospheroidene). Although there were no detectable differences between these two RCs in their near infrared (NIR) absorption spectra at 79 and 293 K, or in their EA spectra at 79 K, significant differences were detected in their EA spectra at 293 K. Three nonlinear optical parameters of each RC were determined in order to evaluate quantitatively these differences; transition dipole-moment polarizability and hyperpolarizability (D factor), the change in polarizability upon photoexcitation (Deltaalpha), and the change in dipole-moment upon photoexcitation (Deltamu). The value of D or Deltaalpha determined for each absorption band of the two RC samples showed similar values at 77 or 293 K. However, the Deltamu values of the special pair Bchls (P) and the monomer Bchls absorption bands showed significant differences between the two RCs at 293 K. X-ray crystallography of the two RCs has revealed that a single molecule of the solubilizing detergent LDAO occupies part of the carotenoid binding site in the absence of a carotenoid. The difference in the value of Deltamu therefore represents the differential effect of the detergent LDAO and the carotenoid on P. The change of electrostatic field around P induced by the presence of Car was determined to be 1.7 x 10(5) [V/cm], corresponding to a approximately 10% change in the electrostatic field around P.

Carotenoids↗
PubMed2005

The influence of different treatments of electrostatic interactions on the thermodynamics of folding of peptides.

Replica exchange molecular dynamics simulations were performed to investigate the effects of different electrostatic treatments on the structure and thermodynamics of a small beta-hairpin forming peptide. Three different electrostatic schemes were considered: regular cutoffs, generalized reaction field (GRF), and particle mesh Ewald (PME), with the peptide modeled using OPLS/AA all-atom force field with explicit TIP3P water. Both the GRF and PME methods yielded results consistent with experiment, with free energy surfaces displaying a single minimum corresponding to the native beta-hairpin structure. In contrast, use of straight cutoffs led to the population of an additional local minimum corresponding to nonhairpin conformations that compete with the formation of the native beta-hairpin at low temperatures. This extra minimum would not be apparent in conventional constant-temperature molecular dynamics simulations run for a few nanoseconds. This result points to the critical need of careful sampling of conformational space to assess the quality of different numerical treatments of long-range forces. While differences emerged in the nature of the unfolded states populated using PME and GRF approaches, simulations on the beta-hairpin forming peptide and on two additional control peptides indicate that the GRF treatment of electrostatics offers a satisfactory compromise between accuracy and computational speed for the identification of low-energy conformations. A GRF-based approach emerges as a viable means for treating larger biological systems that would be prohibitively costly to simulate using PME methods.

Computer Simulation↗
PubMed2006

Electrostatics of ligand binding: parametrization of the generalized Born model and comparison with the Poisson-Boltzmann approach.

An accurate and fast evaluation of the electrostatics in ligand-protein interactions is crucial for computer-aided drug design. The pairwise generalized Born (GB) model, a fast analytical method originally developed for studying the solvation of organic molecules, has been widely applied to macromolecular systems, including ligand-protein complexes. However, this model involves several empirical scaling parameters, which have been optimized for the solvation of organic molecules, peptides, and nucleic acids but not for energetics of ligand binding. Studies have shown that a good solvation energy does not guarantee a correct model of solvent-mediated interactions. Thus, in this study, we have used the Poisson-Boltzmann (PB) approach as a reference to optimize the GB model for studies of ligand-protein interactions. Specifically, we have employed the pairwise descreening approximation proposed by Hawkins et al.(1) for GB calculations and DelPhi for PB calculations. The AMBER all-atom force field parameters have been used in this work. Seventeen protein-ligand complexes have been used as a training database, and a set of atomic descreening parameters has been selected with which the pairwise GB model and the PB model yield comparable results on atomic Born radii, the electrostatic component of free energies of ligand binding, and desolvation energies of the ligands and proteins. The energetics of the 15 test complexes calculated with the GB model using this set of parameters also agrees well with the energetics calculated with the PB method. This is the first time that the GB model has been parametrized and thoroughly compared with the PB model for the electrostatics of ligand binding.

Ligands↗
PubMed2006

Electrostatic stability of a large collection of charged anisotropic nanoparticles: a monte carlo study exploiting a hierarchical approach.

We have performed Monte Carlo simulations of the self-organization of large collections of charged disks of various electric charges to probe the influence of electrostatic coupling on the structure and the mechanical stability of aqueous dispersions of charged anisotropic nanoparticles in the presence of salt. A hierarchical approach of the long-range Coulombic potential was used to perform such Monte Carlo simulations of a large number of charged species. By analyzing the influence of the net electric charge of the disks on their self-organization, we detected a negative contribution to the mean force potential resulting from their electrostatic coupling. In addition, it has been shown that the same electrostatic coupling restricts the spatial extend of locally ordered microdomains within dilute dispersions of charged anisotropic colloids.

Journal Article↗
PubMed2006

Electrostatic screening and energy barriers of ions in low-dielectric membranes.

We present exact solutions of the linear Poisson-Boltzmann equation for several problems relevant for ion translocation across low-dielectric membranes. Our results are obtained for a finite Debye screening length, and they generalize the classical results for pure Coulombic electrostatics (Parsegian, A. Nature (London) 1969, 221, 844). We calculate the electrostatic self-energy of an ion in the middle of a low-dielectric slab, its energy inside a cylindrical high-dielectric pore, and its energy inside a high-dielectric spherical jacket. We consider also the influence of negative charges distributed on the walls of the cylindrical pore. We show that ion self-energy barriers are considerably reduced due to screening of electrolyte. We compare our results with some numerical results for screened electrostatics of ion channels and wide pores.

Computer Simulation↗
PubMed2006

Classical molecular electrostatics: recognition of ligands in proteins and the vibrational Stark effect.

It is shown that classical electrostatics quantitatively describes both the binding of the diatomic ligands XO (X = C, N, O) to the heme group in myoglobin and the dependence of their vibrational frequencies upon an external field, the vibrational Stark effect. The key is a proper treatment of induced dipoles. The results suggest that ligand binding occurs via an "electrostatic bond", a generalization of the standard ionic bond to include induction, and, more generally, that classical electrostatics can replace quantum mechanics for a considerable simplification of some complex problems.

Iron↗
PubMed1998

A general approach for the prediction of the intestinal absorption of drugs: regression analysis using the physicochemical properties and drug-membrane electrostatic interaction.

A general method for predicting the intestinal absorption of a wide range of drugs using multiple regression analysis of their physicochemical properties and the drug-membrane electrostatic interaction was developed. The absorption rates of tested drugs from rat jejunum were measured by the in situ single-pass perfusion technique. The drugs used in this study were divided into three groups for regression analysis, and a smaller "test" set of compounds was used to assess the predictive capacity of the regression equation. When the analysis was applied to each respective group of drugs (i.e., anionic, cationic, and nonionized compounds), obtained regression coefficients were 0.569, 0.821, 0.728 by using the organic solvent (n-octanol)/buffer partition coefficient, 0.730, 0.734, 0.914 using the permeation rate across a silicon membrane, and 0.790, 0.915, 0.941 using an EVA membrane, respectively. However, smaller regression coefficients of 0.377, 0. 468, and 0.718 were obtained when these three groups of drugs were put together for prediction. Meanwhile, correlation was improved remarkably when drug-membrane electrostatic interactions, namely, hydrogen-bonding donor (Halpha) and acceptor (Hbeta) activity or index of electricity (Ec), were added to the other parameters of lipophilicity and permeation rate across the EVA membrane (r = 0.880 and 0.883, respectively). Moreover, the equation obtained from these regression analyses was applicable even to the prediction of the absorption of the zwitterionic drugs. These results suggest that including the electrostatic interaction parameters in addition to lipophilicity and permeability across artificial membranes would afford a better prediction for the intestinal absorption of the vast majority of drugs.

Animals↗
PubMed2004

Competition of hydrogen-bonding and electrostatic interactions within hybrid polymer multilayers.

Using a layer-by-layer sequential adsorption technique, we report the construction of hybrid films in which layers of hydrogen-bonded polymers are embedded within electrostatically associated polyelectrolytes. The components of the hybrid film include a neutral hydrogen-bonding polymer, a weak polycarboxylic acid, and a strong polycation. Depending on the pH value used for the deposition of the electrostatic film, we found two distinctive regimes of film growth. At pHs lower than a critical value, deposition of electrostatic layers occurred on top of hydrogen-bonded stacks to produce hybrid, three-component films. At pHs higher than a critical value, neutral, hydrogen-bonded chains were displaced by the adsorbing chains of the polycation, producing two-component films. The property of the hydrogen-bonded stacks of hybrid films to be selectively dissolved by exposing them to a high pH makes these films promising candidates for producing free polyelectrolyte films.

Adsorption↗
PubMed2004

Cylindrical cell model for the electrostatic free energy of polyelectrolyte complexes.

Associative phase separation (complex coacervation) in a mixture of oppositely charged polyelectrolytes can lead to different types of (inter-)polyelectrolyte complexes (soluble micelles, macroscopic precipitation). In a previous report [Langmuir 2004, 20, 2785-2791], we presented a model for the electrostatic free energy change when (weakly charged) polyelectrolyte forms a homogeneous complex phase. The influence of ionization of the polymer on the electrostatic free energy of the complex was incorporated but the influence of complex density neglected. In the present effort, cylindrical cells are assumed around each polyelectrolyte chain in the complex, and on the basis of the Poisson-Boltzmann equation, the electrostatic free energy is calculated as a function of the complex density. After combination with Flory-Huggins mixing free energy terms and minimization of the total free energy, the equilibrium complex density is obtained, for a given ratio of polycations to polyanions in the complex. The analysis is used in an example calculation ofpolyelectrolyte film formation by alternatingly applying a polycation and a polyanion solution. The calculation suggests that the often observed exponential growth of a polyelectrolyte film when the polymer is weakly charged has a thermodynamic origin: the polyelectrolyte complex shifts repeatedly between two equilibrium states of different densities and compositions. However, when the polyelectrolytes are strongly charged the difference in the compositions between the two equilibrium states is very small, and exponential growth by an absorption mechanism is no longer possible.

Journal Article↗
PubMed2006

Gelation of native beta-lactoglobulin induced by electrostatic attractive interaction with xanthan gum.

The mechanism and kinetics of the electrostatic gelation of native beta-lactoglobulin-xanthan gum mixtures in aqueous solution is reported. The total biopolymer concentration at which gelation was obtained was extremely low (0.1 wt %) compared to the usually tested concentrations for protein-polysaccharide mixed gels (4-12 wt %). This is, to our knowledge, the first time that oppositely charged proteins and polysaccharides are reported to form a gel without applying any treatment to denature the protein (e.g. heating, enzymatic hydrolysis) and at such low concentrations. Static light-scattering and viscoelastic measurements allowed determination of the gelation kinetics. It was found that the gelation process initiated following a similar path as that of an associative phase separation process, i.e., with the formation of primary and interpolymeric electrostatic complexes. However, interpolymeric complexes were able to form clusters and junction zones that resulted in the freeze-in of the whole structure at the point of gelation. The formed gel is therefore a coupled-gel, that is, a gel that has junction zones involving two different molecules. The structuration of xanthan gum, even at these low concentrations, may have played a role in the structuration process. Due to the electrostatic nature of the gels, there was an optimum pH and macromolecular ratio at which the stability of the gels was maximal. This was related to the existence of a stoichiometric electrical charge equivalence pH, where molecules carry equal but opposite charges and protein-polysaccharide interactions are at their maximum.

Gels↗
PubMed2006

Electrostatic stretching of a charged vesicle.

We present a closed-form solution of electrostatic potential self-induced by a uniformly charged micro/nanovesicle and the corresponding elastic deformation of the vesicle membrane due to Maxwell stress. At equilibrium, the electrostatic force induced on both sides of the membrane is balanced by the elastic force of the stretched membrane. We develop differential and integral solutions of the coupled Poisson-Boltzmann system for a spherical vesicle and demonstrate that the integral solution is relatively flexible in formulating asymmetric configurations. Analytical results are formulated in terms of vesicle size, Debye length, and the surface charge density. The membrane stretching is characterized by the dimensionless group that defines the relative strength of the net electric force with respect to the membrane stiffness. We found that the self-induced electrostatic interaction will lead to a pre-stressed membrane although the small displacement is often negligible compared with the vesicle size. Quantitative analysis also reveals that the electric force can assist the vesicle in recovering its opening pore.

Models, Chemical↗
PubMed2006

Molecular dynamics simulations of multilayer polyelectrolyte films: effect of electrostatic and short-range interactions.

The effect of the strength of electrostatic and short-range interactions on the multilayer assembly of oppositely charged polyelectrolytes at a charged substrate was studied by molecular dynamics simulations. The multilayer buildup was achieved through sequential adsorption of charged polymers in a layer-by-layer fashion from dilute polyelectrolyte solutions. The strong electrostatic attraction between oppositely charged polyelectrolytes at each deposition step is a driving force behind the multilayer growth. Our simulations have shown that a charge reversal after each deposition step is critical for steady multilayer growth and that there is a linear increase in polymer surface coverage after the first few deposition steps. Furthermore, there is substantial intermixing between chains adsorbed during different deposition steps. We show that the polymer surface coverage and multilayer structure are each strongly influenced by the strength of electrostatic and short-range interactions.

Journal Article↗
PubMed2000

Hydrogen bonding and electrostatic interaction contributions to the interaction of a cationic drug with polyaspartic acid.

PURPOSE: To determine the mechanism and identify forces of interaction between polyaspartic acid and diminazene (a model drug). Such knowledge is essential for the design of polymeric drug delivery systems that are based on molecular self-assembly into complexes or micellar type systems. METHODS: Complex formation was studied by isothermal titration microcalorimetry and the McGhee von Hippel model was applied to obtain K(obs), deltaH(obs), and n(obs). The calorimetry data were compared with both an optical density study and the amount of free/complexed drug. RESULTS: The diminazene-polyaspartic acid interaction is enthalpically driven, whereby one diminazene molecule interacts with two monomers of polyaspartic acid. The dependence of K(obs) on salt concentration reveals a contribution of electrostatic interactions. However, applying Manning's counter ion condensation theory shows that the major driving force for the complex formation is hydrogen bonding, with interfacial water molecules remaining buried within the complex. The modelling of the pH dependence of K(obs) and deltaH(obs) demonstrates that the ionization of carboxylic groups of polyaspartic acid is a prerequisite for the interaction. CONCLUSIONS: Complex formation between diminazene and polyaspartic acid is driven by both electrostatic interactions and hydrogen bonding, with the latter being the dominating force. Although electrostatic interactions are not the major driving force, ionization of the drug and polymer is essential for complex formation.

Cations↗
PubMed1997

Aerosol electrostatics. I: Properties of fine powders before and after aerosolization by dry powder inhalers.

PURPOSE: To evaluate the dependence of fine particle dose charge (FPD charge) generated from powder inhalers on physico-chemical properties of the inhalation powder, inhaler type, deaggregation mechanism, dose number and/or retained powder. METHODS: Electrostatic charges were determined on micronized powders and aerosolized fine particle doses withdrawn from two, high efficiency, multidose powder inhalers, Turbohaler and prototype Dryhaler. The behavior of terbutaline sulfate, budesonide, albuterol (sulfate and base), beclomethasone dipropionate and lactose was assessed before and after aerosolization. RESULTS: Both inhalers conferred triboelectric FPD charges during aerosolization in the range -400 pC through +200 pC. Specific charges (charge/unit mass) on the fine particle doses of budesonide from Dryhaler were significantly less than those from Turbohaler (p < 0.01). Electrostatic charges on the potentially respirable cloud of terbutaline sulfate generated by Bricanyl Turbohaler were positive and/or negative and unpredictable. With Pulmicort Turbohaler, FPD charges on budesonide were always positive. Dryhaler was used to determine the chemical dependence of fine particle triboelectrification during the aerosolization of pure materials. A triboelectric series was constructed from the Dryhaler results ranking the powders from positive to negative as budesonide > lactose > albuterol sulfate > terbutaline sulfate > or = albuterol > or = beclomethasone dipropionate. CONCLUSIONS: While there was no evidence of FPD charge dependence upon dose number with either inhaler, FPD charges were dependent upon the powder under investigation, as well as the construction and deaggregation mechanism of the inhaler. The specific charge on the fine particle dose of budesonide from Turbohaler corresponded to approximately 200 electronic charges per particle, a value which is known to affect both total and regional aerosol deposition in the human lung. Electrostatic charge effects may be important determinants of aerosol behavior and should not be neglected.

Aerosols↗
PubMed2001

Electrostatic and structural similarity of classical and non-classical lactam compounds.

Various electrostatic and structural parameters for a series of classical and non-classical beta-lactams were determined and compared in order to ascertain whether some specific beta-lactams possess antibacterial or beta-lactamase inhibitory properties. The electrostatic parameters obtained, based on the Distributed Multipole Analysis (DMA) of high-quality wavefunctions for the studied structures, suggest that some non-classical beta-lactams effectively inhibit the action of beta-lactamases. As shown in this work, such electrostatic parameters provide much more reliable information about the antibacterial and inhibitory properties of beta-lactams than do structural parameters.

Anti-Bacterial Agents↗