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The intrauterine device and pelvic inflammatory disease: the Women's Health Study reanalyzed.

The Women's Health Study (WHS) was a large, widely accepted and influential case-control study of the relationship between the use of intrauterine contraceptive devices (IUDs) and pelvic inflammatory disease (PID). The data were collected at 16 hospitals in 9 cities across the U.S.A. from October 1976 through August 1978. The first paper on this research was published in 1981 and concluded that IUDs increase the risk of PID. The report cited an estimated RR (relative risk) of PID for current IUD users vs nonIUD users of 1.6 with a 95% confidence interval of (1.4, 1.9). However, careful examination of the report reveals that the data support conclusions antithetical to those at which the author arrived. When the second report on the WHS was published in 1983, it was anticipated that many of the shortcomings of the first report would be corrected, but they were not. In 1983 we undertook a complete reanalysis of the same WHS data using more appropriate criteria and the results were compared to the first two published reports. The reanalysis revealed an RR of 1.02 (0.86, 1.21) for current IUD users compared to noncontraceptors. The conclusion of the WHS should have been that IUDs do not increase the risk of PID.

Adult↗

Relevance of lymph node micrometastases in radically resected endobronchial carcinoid tumors.

BACKGROUND: Endobronchial carcinoids may recur even if radically resected. This retrospective study investigates the clinical and prognostic relevance of lymph node micrometastasis in these neoplasms. METHODS: Fifty-five patients underwent standard anatomic resection (lobectomy or pneumonectomy) with systematic routine (hilar and mediastinal) lymphadenectomy. After an evaluation of conventional prognostic factors, we reanalyzed lymph nodes of pN0 patients for micrometastasis using immunohistochemistry (anti-cytokeratin AE1/AE3 and anti-chromogranin A antibodies). RESULTS: We performed 9 pneumonectomies, 41 lobectomies, and 5 bilobectomies. Histologic examination showed 47 (85%) typical carcinoid and 8 (14.5%) atypical. Twelve patients were pN1 (8 typical, 4 atypical); after reanalysis another 8 revealed micrometastasis, 6 N1 micrometastasis (5 typical, 1 atypical), and 2 N2 micrometastasis (2 atypical), increasing subjects with nodal involvement (pN1 and N micrometastasis) from 12 (21.8%) to 20 (36.4%; p = 0.01). Micrometastases were more frequent in atypical carcinoids (p = 0.002). Local recurrence developed in 3 (5.4%) patients: 2 pN1 (1 typical, 1 atypical) and 1 N1-micrometastasis (1 typical). Distant relapse occurred in 2 (3.6%) patients, both N2 micrometastasis (2 atypical). After reanalysis, recurrence rate in patients with nodal disease increased from 16.7% to 25% (p = 0.01). All patients with recurrence died: all had pN1 or N micrometastasis. No patient confirmed as N0 had recurrence. Only histologic pattern and node status significantly influenced disease-free (p = 0.002 and p = 0.05) and overall survivals (p = 0.02 and p < 0.001), respectively. Micrometastasis worsen both disease-free (p < 0.0001) and overall (p < 0.001) survival rates at 5 and 10 years. CONCLUSIONS: Routine systematic lymphadenectomy with immunohistochemical detection of lymph node micrometastasis contributes to identification of a larger population at risk with a higher recurrence rate, allowing a more accurate staging of endobronchial carcinoids.

Adolescent↗

A right hemispheric prefrontal system for cognitive time measurement.

Despite a growing body of neuroimaging data, little consensus has been reached regarding the neural correlates of temporal processing in humans. This paper presents a reanalysis of two previously published neuroimaging experiments, which used two different cognitive timing tasks and examined both sub- and supra-second intervals. By processing these data in an identical manner, this reanalysis allows valid comparison and contrasting across studies. Conjunction of these studies using inclusive masking reveals shared activity in right hemispheric dorsolateral and ventrolateral prefrontal cortex and anterior insula, supporting a general-purpose system for cognitive time measurement in the right hemispheric prefrontal cortex. Consideration of the patterns of activity in each dataset with respect to the others, and taking task characteristics into account, provides insight into the possible role of dorsolateral prefrontal cortex in working memory and of posterior parietal cortex and anterior cingulate in attentional processing during cognitive time measurement tasks.

Adult↗

Efficacy and safety of mixed amphetamine salts extended release (adderall XR) in the management of oppositional defiant disorder with or without comorbid attention-deficit/hyperactivity disorder in school-aged children and adolescents: A 4-week, multicenter, randomized, double-blind, parallel-group, placebo-controlled, forced-dose-escalation study.

BACKGROUND: Oppositional defiant disorder (ODD)is associated with a high degree of impairment in social skills, family interaction, and academic functioning. Comorbid ODD is reportedly present in 40% to 70% of children and adolescents with attention-deficit/hyperactivity disorder (ADHD). OBJECTIVE: The goal of this study was to assess the efficacy and safety of mixed amphetamine salts extended release (MAS XR) for the treatment of ODD in children and adolescents aged 6 to 17 years. METHODS: This was a 4-week, multicenter, randomized, double-blind, parallel-group, placebo-controlled, forced-dose-escalation study. Patients were randomized to receive active treatment with MAS XR 10, 20, 30, or 40 mg/d or placebo. The primary efficacy end point was the ODD subscale of the Swanson, Nolan, and Pelham-IV (SNAP-IV) parent rating. Primary safety measures included adverse events recorded at each visit and for 30 days after study drug discontinuation, and changes in vital signs, 12-lead electrocardiographic (ECG) findings, laboratory tests and physical examinations, and body weight. A post hoc efficacy reanalysis was completed based on the results for the per-protocol population. For this analysis, patients were divided into high and low baseline severity categories according to the dichotomized baseline ODD parent or teacher score or dichotomized baseline ADHD parent or teacher score (high defined as scores at the median or greater and low defined as scores less than the median). RESULTS: A total of 308 children and adolescents (age range, 6-17 years; 213 males, 95 females) were randomized to receive active treatment with MAS XR 10 mg/d (n = 60) 20 mg/d (n = 58), 30 mg/d (n = 69), or 40 mg/d (n = 61) or placebo (n = 60). Of the 308 study patients, 244 (79.2%) had comorbid ADHD. A significant change from baseline in the ODD symptoms measured with the SNAP-IV parent rating subscale was found for the MAS XR 30-mg/d (-0.52; P < 0.001) and 40-mg/d (-0.56; P = 0.002) groups in the per-protocol analysis and for the MAS XR 30-mg/d group in the intent-to-treat analysis (-0.42; P < 0.005). Throughout the study, MAS XR was well tolerated in these children and adolescents with ODD, and most adverse events were mild to moderate in intensity. The most frequently reported adverse events occurring in MAS XR-treated patients were anorexia/decreased appetite (25.3%), insomnia (19.5%), headache (18.5%), and abdominal pain (10.7%). Statistically, but not clinically, significant decreases in body weight were seen with MAS XR (range, -1.1 to -3.5 lb; P < 0.001 vs placebo). Changes in laboratory values, ECG measurements, and physical and other vital signs were also not clinically significant. The post hoc reanalysis was based on the per-protocol population (n = 229). An assessment of the high baseline symptom severity subgroups showed a good response to MAS XR treatment for the SNAP-IV parent and teacher rating scales (both, P < 0.05). CONCLUSION: This study found that higher doses ofMAS XR (30 and 40 mg) were effective and well tolerated in the management of ODD in these school aged children and adolescents in the presence or absence of ADHD.

Adolescent↗

Semantic re-interpretation and garden path recovery.

Participant's eye-movements were recorded while they read locally ambiguous sentences. Evidence for processing difficulty was found when the interpretation of the initially preferred misanalysis clashed with that of the globally correct analysis, demonstrating the persistence of the earlier interpretation. Processing difficulty associated with the syntactic reanalysis was largely localised to the disambiguating region, with difficulty due to semantic persistence occurring later. The results show that semantic persistence is not limited to extreme cases of parse failure, and can occur even when reanalysis is relatively straightforward.

Attention↗

Long-term follow-up of children who received rapid genomic sequencing.

PURPOSE: To explore long-term trajectories of children who received rapid genome sequencing (RGS) in intensive care settings. METHODS: We examined the electronic health records of 67 critically ill pediatric patients who received RGS 6 to 8 years ago with a collective initial diagnostic yield of 46%. RESULTS: The median length of follow-up was 6.2 years (interquartile range 4.0-7.2 years). RGS-diagnosed patients had a longer average follow-up time compared with undiagnosed patients (5.9 years vs 4.8 years, P = .026) and more subspecialty appointments per follow-up year (9.4 vs 6.9, P = .036). Mortality during the follow-up period was 9%. Patients averaged 2.1 hospital readmissions per follow-up year and 28.1 hospitalized days per follow-up year. Forty-four patients (66%) had a documented new phenotype in the electronic health records during their follow-up period. Seven patients received clinician-driven reanalysis during the follow-up period, yielding 1 new diagnosis. Systematic reanalysis of RGS performed as part of this study identified 4 new candidate diagnoses. CONCLUSION: Pediatric patients who receive RGS during intensive care unit hospitalizations continue to be high health care utilizers in subsequent years, regardless of whether RGS identified a diagnosis. Additionally, two-thirds of this cohort had a documented phenotypic change over the follow-up period, indicating dynamic clinical evolution in the years after RGS.

Humans↗

An economic evaluation of functional genomic testing for individuals with undiagnosed rare disorders.

PURPOSE: Functional genomics (FG) approaches, such as RNA-seq and proteomics, offer a complementary diagnostic modality for individuals whose cases remain unsolved after genomic sequencing. This study evaluates the cost-effectiveness and cost-benefit of FG for individuals with suspected monogenic disorders relative to manual reanalysis of genomic data at 18 months. METHODS: A decision tree model compared the costs and outcomes of FG and 18-month reanalysis using data from two Australian Undiagnosed Disease Programs. Deterministic and probability sensitivity analysis were performed. RESULTS: With a diagnostic yield of 13%, FG enabled 4 additional diagnoses per 100 individuals tested at an additional cost of $390 (US $240), resulting in an incremental cost-effectiveness ratio of $8,550 ($5,313) and an 85% probability of being cost-effective. CONCLUSION: Functional genomics enables timely diagnosis for individuals with suspected monogenic disorders by evaluating the functional impact of variants of uncertain significance, offering an advantage over reanalyzing genomic data at 18 months. Integration into the Australian healthcare system, supported by collaborative networks and secure data-sharing infrastructure, coupled with addressing barriers to accessing funded genomic testing, could lead to an annual net benefit of up to $1.1 million ($0.7 M).

Functional genomics↗

Germline ATM Testing in Hereditary Cancer Syndromes: Feedback from a Five-Year Center Cohort.

PURPOSE: Germline ATM pathogenic or likely pathogenic (P/LP) variants are increasingly recognized as clinically relevant in hereditary cancer predisposition, their integration into routine testing remains heterogeneous across countries. We describe the prevalence, tumor spectrum and relative risk associated with germline ATM P/LP variants in individuals with breast and pancreatic cancer. METHODS: We conducted a five-year retrospective (2019-2025) reanalysis of the ATM gene in 1,707 probands tested with hereditary breast and ovarian cancer (HBOC) or pancreatic cancer panels in our center. For all probands that underwent targeted ATM reanalysis, relative risks (RR) and odds ratios (OR) were calculated. Family-based segregation was performed when possible. RESULTS: Targeted ATM re-analysis identified 33 additional probands with P/LP variants, increasing diagnostic yield from 7.3% to 9.1% in HBOC and from 4.3% to 9.7% in pancreatic cancer. Among 22 breast-cancer probands, mean age at diagnosis was 47 years. Case-control comparison yielded OR 3.85 (95% CI 2.43-6.08; P=8.5&#xd7;10-9) for breast cancer and OR 15.81 (95% CI 6.31-39.66; P=4.0&#xd7;10-9) for pancreatic cancer. CONCLUSION: This work strengthens the role of ATM in cancer predisposition panels and supports its inclusion in French national hereditary cancer panel recommendations, together with implementation of appropriate surveillance and counseling for individuals harboring ATM P/LP variants.

ATM↗

When word category information encounters morphosyntax: an ERP study.

The present study investigated the relationship between two different syntactic information types, namely word category and morphosyntax. The event-related brain potential (ERP) pattern of acoustically presented sentences containing two syntactic anomalies (word category and subject-verb agreement) was compared to the ERP response to sentences containing a single violation. The ERPs for the agreement violation revealed a left anterior negativity (LAN) indicating the detection of the morphosyntactic error, followed by a P600 reflecting processes of reanalysis. The ERPs for both the category and the combined violation showed an early negativity reflecting processes of phrase structure building, followed by a P600 indicating syntactic reanalysis. Additionally, a broadly distributed negativity following the early negativity and preceding the P600 was observed. This ERP component is suggested to reflect reference specification processes arising from the specific sentence structure used in the present study. The ERP pattern for the combined violation suggests no additivity or interaction between the two syntactic anomalies in the early time windows (early negativity, reference-related negativity, and LAN), whereas interactive effects are observed in a late time range (P600).

Adolescent↗

Geographic variations in sperm counts: a potential cause of bias in studies of semen quality.

OBJECTIVE: To determine whether geographic variations in sperm counts might bias conclusions drawn from studies of semen quality. DESIGN: Reanalysis of published data from a meta-analysis of 61 studies from 1938 to 1990 that concluded a worldwide decline in semen quality over the last 50 years. MAIN OUTCOME MEASURES: Influence of geographic location on sperm counts. RESULTS: Of 61 studies in the meta-analysis, only 20 included > or = 100 men. These 20 studies collectively comprised 91% of the total men studied. We focused our reanalysis on these 20 studies. Of the studies before 1970, all were from the United States and 80% were from New York. These studies represented locations with the highest sperm counts. In contrast, after 1970, 80% of the studies were from locations not represented earlier, including five studies from third world countries, where sperm counts were low. CONCLUSIONS: Sperm counts vary dramatically among different geographic locations.

Bias↗

Actigraphic assessment of sleep in insomnia: application of the Actigraph Data Analysis Software (ADAS).

The usefulness of the actigraph methodology has been demonstrated in normal individuals. However, the validity of actigraphy has been questioned in insomnia patients because of the considerable measurement error that has been reported between actigraphy (ACT) and polysomnography (PSG). Two independent investigations have reported errors of 48 and 49 min in total sleep time between ACT and PSG. With a new scoring method called the Actigraph Data Analysis Software, a reanalysis of one of these studies was conducted. Based on this reanalysis, we have obtained a measurement error of only 25 min between the two methods. This finding may be an indication of the advantage of this new scoring method. A strong correlation coefficient (r = 0.82, p < 0.0001) was noted between ACT and PSG for total sleep time, thus suggesting a high degree of accuracy of the actigraph methodology in assessing the sleep/wake profile of insomniacs.

Arousal↗

On the periodicity of manic-depressive insanity, by Eliot Slater (1938): translated excerpts and commentary.

Since the classic descriptions of the course of bipolar and recurrent depressive forms of manic-depressive illness by Emil Kraepelin a century ago, it has been considered a truism that the rate of cycling increases, and wellness intervals shorten, with rising counts of recurrences, particularly early in the natural history of the illness. Less well known is that the analysis of this phenomenon is vulnerable to a computational artifact first described by Eliot Slater, based on his reanalysis of data from manic-depressive patients first evaluated by Kraepelin at the Munich Psychiatric Institute. Slater realized that there is an increasingly disproportionate representation of faster-cycling patients in sub-samples involving higher cycle-counts in pooled samples of subjects. More accurate results require analyzing illness-course either within individuals, or in groups matched for episode-counts. This artifact is pervasive in the older and modern research literature, but still not widely recognized. Since Slater's 1938 report in German is not well known, we provide an abbreviated English translation with commentary and additional reanalysis to highlight the phenomenon that might be termed 'Slater's Fallacy'.

Bipolar Disorder↗

Electrophysiological estimates of biological and syntactic gender violation during pronoun processing.

During comprehension, a personal pronoun (he, she, it) refers to a preceding referent (boy, girl, child). This co-reference could be established, among other ways, by using (i). conceptual/semantic information (biological gender agreement between the pronoun and its referent), (ii). syntactic information (syntactic gender agreement), or (iii). both. This event-related brain potential (ERP) study assesses this interplay of syntactic and semantic information. We focussed on the N400 component, related to semantic integration, and the SPS/P600 component, related to syntactic reanalysis. The study was conducted in German, because its rich syntactic gender system offers a means to dissociate between biological (MALE/FEMALE) and syntactic gender (masculine/feminine/neuter), especially in the case of diminutives (das(neuter) Bübchen(MALE) [the little boy]). German subjects read sentences in which a referent (Bübchen(MALE-neuter)/Bub(MALE-masculine) [boy]) was introduced. Later a personal pronoun was presented which either agreed with the referent in terms of syntactic gender, or in terms of biological gender, or both, or violated both agreements. Overall, results showed salient P600 effects for pronouns. This indicates that the establishment of reference involves syntactic reanalysis. Furthermore, we observed N400 effects in sentences with non-diminutives, but not with diminutives. This shows that conceptual/semantic integration is involved during non-diminutive but not during diminutive pronoun processing, or at least it could not be violated. The overall pattern of results supports the claim that for non-diminutives, both syntactic and conceptual information is used to establish co-reference, while for diminutives the process might be purely syntactically driven.

Adult↗

Vibrational energy transfer and relaxation in O2 and H2O.

Near-resonant vibrational energy exchange between oxygen and water molecules is an important process in the Earth's atmosphere, combustion chemistry, and the chemical oxygen iodine laser (COIL). The reactions in question are (1) O2(1) + O2(0) --> O2(0) + O2(0); (2) O2(1) + H2O(000) --> O2(0) + H2O(000); (3) O2(1) + H2O(000) <--> O2(0) + H2O(010); (4) H2O(010) + H2O(000) --> H2O(000) + H2O(000); and (5) H2O(010) + O2(0) --> H2O(000) + O2(0). Reanalysis of the data available in the chemical kinetics literature provides reliable values for rate coefficients for reactions 1 and 4 and strong evidence that reactions 2 and 5 are slow in comparison with reaction 3. Analytical solution of the chemical rate equations shows that previous attempts to measure the rate of reaction 3 are unreliable unless the water mole fraction is higher than 1%. Reanalysis of data from the only experiment satisfying this constraint provides a rate coefficient of (5.5 +/- 0.4) x 10(-13) cm3/s at room temperature, between the values favored by the atmospheric and laser modeling communities.

Journal Article↗

Reliability of mechanical and phased-array designs for serial intravascular ultrasound examinations--animal and clinical studies in stented and non-stented coronary arteries.

BACKGROUND: Both mechanical and multi-element intravascular ultrasound designs have potential advantages and limitations that may impact on their value for clinical and research purposes. Determination of the reproducibility of measurements is critical before a given system can be used in studies such as regression of atherosclerosis trials. METHODS: We performed serial intravascular ultrasound imaging with catheters using mechanical and phased-array designs in stented and non-stented coronary arteries in dogs and in patients. RESULTS: Both systems correlated well for areas (r > or = 0.90, p < 0.0001) and diameters (r > or = 0.84. p < 0.0001) in dogs and in patients. There was a slight difference between multi-element and mechanical designs for measurements of area (mean difference in dogs and in patients: -0.24 and 0.96 mm2, p < 0.055) and diameter (-0.08 and 0.16 mm, p < 0.0001). The reproducibility of the multi-element system for reanalysis of the same frames and for analysis of serial pullbacks was similar to the same measurements with the mechanical system (r > or = 0.96 for all measurements). The differences in absolute and relative variability between the mechanical and phased-array designs, both for reanalysis of same frames and serial pullbacks, were very small. CONCLUSIONS: Although multi-element and mechanical intravascular ultrasound designs are not strictly interchangeable, their similar reproducibility and the small differences in measurements demonstrate that both designs are acceptable alternatives for trials of regression of atherosclerosis. Determination of the variability for serial pullbacks of both designs was also important to assess the statistical power of such trials.

Animals↗

On the spatial distribution of visual attention.

An implication of the data analysis and presentation of Podgorny and Shepard (1983) is that subjects are able to attend simultaneously to more than one square of a grid display when the squares are separated by unattended areas: Attention to such nonunitary areas produces similar benefits as attention to unitary areas. These benefits are reflected in reaction times (RTs), which were reported by Podgorny and Shepard (1983) as being related to a measure of spatial dispersion (compactness) of the attended areas, but this measure does not signify whether these areas are unitary or not. A reanalysis of part of Podgorny and Shepard's (1983) data shows that RTs to attended and unattended squares are almost identical when the attended areas are nonunitary. This reanalysis also shows that RTs are related to compactness for unitary attended areas but that this relation breaks down when attention is focused on nonunitary areas. In addition, Podgorny and Shepard's (1983) data are presented in a way that demonstrates the importance of the actual grid location of probes on RTs. The failure of compactness to reflect these aspects of the spatial nature of attention suggests that this metric is deficient when applied to the study of the spatial determinants of attention.

Attention↗

Escapable conclusions: Toomela (2003) and the universality of trait structure.

A. Toomela (2003) concluded that personality structure may be shaped by a cultural mechanism, word meaning structure, and that the apparent universality of the Five-Factor Model (FFM) was the result of inadequate sampling of concrete thinkers. A reanalysis using targeted rotation showed that the intended structure was generally replicated; small deviations in the most concrete thinkers were probably due to measurement error. The reanalysis authors found no evidence of structural differences in a second sample of adults classified as concrete or abstract thinkers. The FFM structure has been replicated in many samples containing individuals with cognitive or educational limitations; observer ratings may be preferred if these limitations are severe. To date, there is no compelling evidence that culture affects personality structure.

Adult↗

A simulated sequential analysis based on data from two MRC trials.

The motivation for proposing sequential methods for cancer clinical trials is presented, and the methodology examined by re-analysing two completed phase III cancer trials of the Lung Cancer Working Party of the British Medical Research Council. The reanalysis proceeds as if the trials had been designed with a planned series of interim analyses governing stopping. Specifically, the triangular and double-triangular tests were applied. The sequential reanalysis gave a substantial reduction in the number of patient required, and deaths observed, for conclusions to be reached in comparison with the completed studies. In each case, the sequential analysis was stratified for baseline prognostic factors which were seen to be important at the first interim analysis.

Antineoplastic Combined Chemotherapy Protocols↗