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Stabilizing the Advancing Front of Thermally Driven Climbing Films.

As known from thermodynamic principles, the surface tension of a liquid decreases with increasing temperature. This property can be used to force a liquid film to climb a vertical substrate whose lower end is held warmer than the top. The vertical gradient in surface tension generates a surface shear stress that causes the liquid film to spread upward spontaneously in the direction of higher surface tension. Experimental investigations have shown that the application of a large temperature gradient produces a thin climbing film whose leading edge develops a pronounced capillary rim which breaks up into vertical rivulets. In contrast, smaller temperature gradients produce thicker films whose profiles decrease monotonically toward the substrate with no evidence of a rim or subsequent film breakup. We have previously shown within linear stability analysis that a climbing film can undergo a fingering instability at the leading edge when the film is sufficiently thin or the shear stress sufficiently large for gravitational effects to be negligible. In this work we show that thicker films which experience significant drainage cannot form a capillary rim and spread in stable fashion. Gravitational drainage helps promote a straight advancing front and complete surface coverage. Our numerical predictions for the entire shape and stability of the climbing film are in good agreement with extensive experiments published years ago by Ludviksson and Lightfoot (AIChE J. 17, 1166 (1971)). We propose that the presence of a counterflow which eliminates the capillary rim can provide a simple and general technique for stabilizing thermally driven films in other geometries. Copyright 1998 Academic Press.

Journal Article↗

COL1A1 transgene expression in stably transfected osteoblastic cells. Relative contributions of first intron, 3'-flanking sequences, and sequences derived from the body of the human COL1A1 minigene.

Collagen reporter gene constructs have be used to identify cell-specific sequences needed for transcriptional activation. The elements required for endogenous levels of COL1A1 expression, however, have not been elucidated. The human COL1A1 minigene is expressed at high levels and likely harbors sequence elements required for endogenous levels of activity. Using stably transfected osteoblastic Py1a cells, we studied a series of constructs (pOBColCAT) designed to characterize further the elements required for high level of expression. pOBColCAT, which contains the COL1A1 first intron, was expressed at 50-100-fold higher levels than ColCAT 3.6, which lacks the first intron. This difference is best explained by improved mRNA processing rather than a transcriptional effect. Furthermore, variation in activity observed with the intron deletion constructs is best explained by altered mRNA splicing. Two major regions of the human COL1A1 minigene, the 3'-flanking sequences and the minigene body, were introduced into pOBColCAT to assess both transcriptional enhancing activity and the effect on mRNA stability. Analysis of the minigene body, which includes the first five exons and introns fused with the terminal six introns and exons, revealed an orientation-independent 5-fold increase in CAT activity. In contrast the 3'-flanking sequences gave rise to a modest 61% increase in CAT activity. Neither region increased the mRNA half-life of the parent construct, suggesting that CAT-specific mRNA instability elements may serve as dominant negative regulators of stability. This study suggests that other sites within the body of the COL1A1 minigene are important for high expression, e.g. during periods of rapid extracellular matrix production.

Animals↗

Eutectic colony formation: a phase-field study.

Eutectic two-phase cells, also known as eutectic colonies, are commonly observed during the solidification of ternary alloys when the composition is close to a binary eutectic valley. In analogy with the solidification cells formed in dilute binary alloys, colony formation is triggered by a morphological instability of a macroscopically planar eutectic solidification front due to the rejection by both solid phases of a ternary impurity that diffuses in the liquid. Here we develop a phase-field model of a binary eutectic with a dilute ternary impurity. We investigate by dynamical simulations both the initial linear regime of this instability, and the subsequent highly nonlinear evolution of the interface that leads to fully developed two-phase cells with a spacing much larger than the lamellar spacing. We find a good overall agreement with our recent linear stability analysis [M. Plapp and A. Karma, Phys. Rev. E 60, 6865 (1999)], which predicts a destabilization of the front by long-wavelength modes that may be stationary or oscillatory. A fine comparison, however, reveals that the assumption commonly attributed to Cahn that lamellae grow perpendicular to the envelope of the solidification front is weakly violated in the phase-field simulations. We show that, even though weak, this violation has an important quantitative effect on the stability properties of the eutectic front. We also investigate the dynamics of fully developed colonies and find that the large-scale envelope of the composite eutectic front does not converge to a steady state, but exhibits cell elimination and tip-splitting events up to the largest times simulated.

Journal Article↗

[Population dynamics of endangered plant species Abies chensiensis].

In order to know the endangered status and causes of Abies chensiensis in Qinlin Mountains, a field investigation on 18 plots was conducted on its age structure, life table and fecundity, and its population dynamics were predicted by time sequence model. The analysis on the age structure of Abies chensiensis populations showed that there were fewer young individuals, but middle-aged and old individuals were relatively rich. The population D in Abies chensiensis-Indigofera amblyantha-Carex lanceolata association showed a relatively stable development tendency, while other four populations (A, B, C and E) in Abies chensiensis-Pinus tabulaeformis-Sinarundinaria nitida-Carex lanceolata association, Abies chensiensis-Quercus aliena var. acutserrata-Litsea pungens-Carex lanceolata association, Abies chensiensis-Betula albo-sinensis-Sinarundinaria nitida-Duchesnea indica association, and Abies chensiensis-Pinus tabulaeformis-Smilax stans-Carex lanceolata association all showed an obviously declining tendency. The analysis on the life tables and survival curves showed that the survival curve of Abies chensiensis populations belonged to Deevey III, and the death peak of different populations was in the period of 60--100 years old. The number difference among populations reflected the population habitat. Time sequence prediction indicated the numbers of old individuals would be increased at the beginning, and decreased finally in 20, 40, and 80 years. It was difficult to maintain the population stability. Analysis on 10 ecological factors showed that tree coverage, soil organisms and air humidity influenced population positively, and human disturbance and sunlight influenced population negatively. In situ conservation should be taken as the most important management countermeasure, and natural regeneration should be promoted. At the same time, artificial population should be expanded.

Abies↗

Discrete gap breathers in a diatomic Klein-Gordon chain: stability and mobility.

A one-dimensional diatomic chain with harmonic intersite potential and nonlinear external potential is considered (the Klein-Gordon model). Localized solutions of the corresponding nonlinear differential equations with frequencies inside the gap of the linear wave spectrum--"gap breathers"--are studied numerically. The linear stability analysis for these solutions is performed while changing the system parameters from the anticontinuous to the continuous limit. Two different types of solutions are considered: symmetric centered at a heavy atom and antisymmetric centered at a light atom, respectively. Different mechanisms of instability, oscillatory as well as nonoscillatory, of the gap breathers are studied, and the influence of the instabilities on the breather solutions is investigated in the dynamics simulations. In particular, the presence of an "inversion of stability" regime, with simultaneous nonoscillatory instabilities of symmetric and antisymmetric solutions with respect to antisymmetric perturbations, is found, yielding practically radiationless mobility.

Journal Article↗

Bifurcation analysis of multiple steady flow patterns for Rayleigh-Bénard convection in a cubical cavity at Pr = 130.

The bifurcation diagram of steady convective flow patterns inside a cubical cavity with adiabatic lateral walls heated from below and filled with silicone oil (Pr = 130) was determined for values of the Rayleigh number (Ra) up to 1.5 x 10(5). A continuation procedure based on the Galerkin spectral method was used to determine the steady convective solutions as a function of Ra. Bifurcations leading to either new steady or time-dependent solutions were identified and new steady solution branches were also continued. A total of fifteen steady solutions were tracked and the stability analysis predicted that six flow patterns were stable and that two, three, or even four of these patterns coexisted over certain ranges of Ra in the studied domain. Predicted flow patterns and transitions are in agreement with flow visualizations previously reported in the literature. The variation of the Nusselt number (Nu) as a function of Pr was investigated for three of the stable flow patterns identified: a x or y roll, a diagonal oriented roll and a pattern formed by four connected half rolls. It was found that whereas the Nusselt changes within the region 0.71 < or = Pr < or = 10 it tends to an asymptotic value with increasing Pr.

Journal Article↗

Analysis of members of the Ig-gene superfamily by thermal gradient polyacrylamide gel electrophoresis.

A solid aluminum block, connected with a warm and cold thermostated waterbath, provided for a linear transversal temperature gradient (TG) during polyacrylamide gel electrophoresis (PAGE). Noncovalently bound heavy chain dimers as well as heavy-light chain dimers, derived from human monoclonal IgG, could be melted into monomers using a 40-75 degrees C TG under conditions of sodium dodecyl sulfate-PAGE. Using native PAGE, major histocompatibility complex (MHC) class I molecules, preloaded with the iodinated peptide FAPGNYPAL could be melted in a 4-40 degrees C TG to release the peptide. The method is in general applicable to thermal stability analysis of noncovalently bound hetero-oligomers if the product after melting possess different electrophoretic mobilities.

Amino Acid Sequence↗

Immunodetection of the bacteriocin lacticin RM: analysis of the influence of temperature and Tween 80 on its expression and activity.

Immunoassays with specific antibodies offer higher sensitivity than do bioassays with indicator strains in the detection and quantification of several bacteriocins. Here we present the purification of lacticin RM and the production of specific polyclonal antibodies to a synthetic peptide resembling an internal fragment of the mature bacteriocin. The specificity and sensitivity of the generated polyclonal antibodies were evaluated in various immunoassays. The detection limits of lacticin RM were found to be 1.9, 0.16, and 0.18 micro g ml(-1) for Western blot, immuno-dot blot, and noncompetitive indirect enzyme-linked immunosorbent assays, respectively. Immunoassay sensitivities were 12.5-fold higher than that of the agar diffusion test (ADT). The production of lacticin RM showed temperature dependency, with 3, 4.2, 12.7, 28.9, 37.8, and 12 micro g ml(-1) at 37, 30, 20, 15, 10, and 4 degrees C, respectively. Temperature-stability analysis demonstrated that lacticin RM is sensitive to mild temperature, but the loss of activity does not seem to result from protein degradation. Tween 80 increased the concentration of lacticin RM eightfold and probably affected the results of the ADT either by enhancing the activity of lacticin RM or by increasing the sensitivity of the indicator strain. The use of antibodies for the specific detection and quantification of lacticin RM can expand our knowledge of its production and stability, with important implications for further investigation and future application.

Amino Acid Sequence↗

Machine Learning and Metabolomics to Characterize Warburg-Like Metabolic Subtypes in Human Retinal Endothelial Cells Exposed to Risk Factors Associated With Proliferative Diabetic Retinopathy.

PURPOSE: High glucose (HG), hypoxia (Hyp), and their combination are major risk factors for proliferative diabetic retinopathy (PDR). Although these conditions induce features of the Warburg-like metabolic reprogramming in human retinal endothelial cells (HRECs), it remains unclear whether they produce distinct metabolic and angiogenic subtypes. This study aimed to characterize the Warburg-like-associated metabolic heterogeneity induced by these PDR-related risk factors and evaluate the ability of supervised machine-learning models to distinguish these subtypes. METHODS: HRECs were cultured under normoglycemic, HG, Hyp (2% O2), and combined HG-Hyp conditions. Untargeted LC-MS/MS metabolomics quantified metabolites spanning carbohydrates, amino acids, nucleotides, and lipids. Principal component analysis (PCA) assessed overall metabolic variation, and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis identified metabolic pathways associated with angiogenesis. In vitro angiogenesis assays measured endothelial tube formation and branching. Nine supervised classifiers (decision tree, logistic regression, na&#xef;ve Bayes, random forest, K-Nearest Neighbors, neural network, gradient boosting, AdaBoost, and Support Vector Machine) were trained on the highest-ranked metabolites selected by the Information Gain Ratio feature-ranking approach. Model performance was evaluated using 10-fold cross-validation, leave-one-out cross-validation (LOOCV), permutation testing, and a classifier stability analysis under biologically meaningful distributional shift using an independent chemically induced hypoxia model (CoCl2). RESULTS: PCA revealed partial separation of metabolic profiles across conditions, indicating different Warburg-like metabolic subtypes. The combined HG-Hyp condition exhibited enhanced angiogenic potential relative to either HG or Hyp alone. KEGG pathway enrichment analysis identified fatty acid biosynthesis and elongation among the most significantly enriched pathways in HRECs under combined HG-Hyp conditions, alongside amino sugar and nucleotide sugar metabolism, glycerophospholipid metabolism, the pentose phosphate pathway, and glycolysis/gluconeogenesis. Supervised machine-learning classifiers distinguished these metabolic subtypes, with AdaBoost and gradient Boosting showing the most balanced, reproducible performance across 10-fold cross-validation, LOOCV, and permutation testing, and remaining the most reliable classifiers under domain-shift testing (area under the curve = 0.88, P = 0.0061). CONCLUSIONS: In this exploratory analysis, HG, Hyp, and their combination drive metabolically and functionally distinct subtypes of Warburg-like metabolic reprogramming in HRECs, with HG-Hyp in combination producing a highly angiogenic phenotype. Boosting-based ensemble classifiers provide a promising framework for detecting these subtypes even under domain-shift conditions, warranting validation in larger independent datasets. TRANSLATIONAL RELEVANCE: Integrating metabolomics with machine-learning classification offers a strategy to identify Warburg-like metabolic subtypes in retinal endothelial cells, providing insights into angiogenic mechanisms and guiding the development of targeted diagnostics or therapeutics for PDR.

Humans↗

Mathematical modelling of the spread of HIV/AIDS amongst injecting drug users.

In this paper we develop and analyse a model for the spread of HIV/AIDS amongst a population of injecting drug users. Our work is based on a model originally due to Kaplan (1989, Rev. Inf. Diseases 11, 289-98). We start off with a brief literature survey and review; this is followed up by a detailed description of Kaplan's model. We then outline a more realistic extension of Kaplan's model. Then we perform an equilibrium and stability analysis on this model. We find that there is a critical threshold parameter Rzero which determines the behaviour of the model. If Rzero < or = 1 there is a unique disease-free equilibrium, and if Rzero < 1 the disease dies out. If Rzero > 1 this disease-free equilibrium is unstable, and in addition there is a unique endemic equilibrium which is locally stable. If a certain condition is satisfied (and for Kaplan's model this condition is always satisfied), additional complete global-stability results are shown. These results are confirmed and explored further by simulation.

Acquired Immunodeficiency Syndrome↗

Robust control for convection suppression in a fluid layer: The effects of boundary properties, actuator lag, and major parameter uncertainties.

The robustness of control is a requirement to maintain a fluid layer at conductive equilibrium heated to a highly supercritical condition. Robustness determines how much uncertainties, or design parameter mismatches, can be tolerated. Both linear stability analysis and three-dimensional fully nonlinear simulations are used for the study of the linear quadratic Gaussian (LQG) controller. The parameter mismatches from the nominal conditions are introduced into the plant model, while the LQG compensator assumes nominal conditions. The mismatches arise from boundary properties, actuator lag, sensor level uncertainty, and wall thickness, as well as from the major parameters such as Prandtl number, Rayleigh number, wave number, and truncation number in the reduced-order model. The results suggest that the LQG compensator action can preserve closed-loop stability at over ten times the critical Rayleigh number, provided that the mismatches in the sensor level and wall thickness are small. Mismatches in the Prandtl number and wall material properties have little impact. Mismatches in Rayleigh number and wave number are relatively benign compared with the sensor and thickness parameters. Techniques for measuring the plant output temperature at multiple levels with sufficient accuracy may be an implementation challenge.

Journal Article↗

Stability of Adenoscan (adenosine 3 mg ml-1) in plastic syringes.

Adenosine is an effective and safe agent for myocardial stressing in nuclear medicine. It is commercially available as Adenoscan solution (adenosine 3 mg ml-1) and can be conveniently administered to patients via an anaesthesia syringe pump. The solution is dispensed in plastic syringes prior to administration to the patient. The aim of this study was to assess the stability of Adenoscan in plastic syringes to determine if it is possible to pre-dispense the solution and to store dispensed syringes ready for administration to patients. A 4 week stability analysis using high-performance liquid chromatography was carried out on Adenoscan that had been pre-dispensed into polypropylene syringes and stored at 2-8 degrees C. It was found that the concentration of adenosine in the pre-dispensed syringes remained stable during the 4 week period.

Adenosine↗

Study of stability of methotrexate in acidic solution spectrofluorimetric determination of methotrexate in pharmaceutical preparations through acid-catalyzed degradation reaction.

Study of the degradation reaction of methotrexate (MTX) in acidic solution was carried out. Optimization of the experimental parameters of MTX acid hydrolysis was investigated. Spectrofluorimetric method for determination of MTX through measurement of its acid-degradation product, 4-amino-4-deoxy-10-methylpteroic acid (AMP), was developed. Stability of the standard solution of MTX prepared in sulfuric acid was discussed in the view of accelerated stability analysis. Two other comparative spectroflourimetric methods based on measuring the fluorescence intensities from either a condensation reaction with acetylacetone-formaldehyde (Hantzsch reaction) or a reaction with fluorescamine were also described. Beer's law validation, accuracy, precision, limits of detection, limits of quantification, and other aspects of analytical merit are presented in the text. The proposed methods were successfully applied for the analysis of MTX in pure drug and tablets dosage form. The sensitivity of the developed methods was favorable, so it was possible to be adopted for determination of MTX in plasma samples for routine use in high-dose MTX therapy.

Acids↗

The effect of convection on a propagating front with a liquid product: Comparison of theory and experiments.

This work is devoted to the investigation of propagating polymerization fronts converting a liquid monomer into a liquid polymer. We consider a simplified mathematical model which consists of the heat equation and equation for the depth of conversion for one-step chemical reaction and of the Navier-Stokes equations under the Boussinesq approximation. We fulfill the linear stability analysis of the stationary propagating front and find conditions of convective and thermal instabilities. We show that convection can occur not only for ascending fronts but also for descending fronts. Though in the latter case the exothermic chemical reaction heats the cold monomer from above, the instability appears and can be explained by the interaction of chemical reaction with hydrodynamics. Hydrodynamics changes also conditions of the thermal instability. The front propagating upwards becomes less stable than without convection, the front propagating downwards more stable. The theoretical results are compared with experiments. The experimentally measured stability boundary for polymerization of benzyl acrylate in dimethyl formamide is well approximated by the theoretical stability boundary. (c) 1998 American Institute of Physics.

Journal Article↗

Bifurcation, chaos and suppression of chaos in FitzHugh-Nagumo nerve conduction model equation.

We study the effect of constant and periodic membrane currents in neuronal axons described by the FitzHugh-Nagumo equation in its wave form. Linear stability analysis is carried out in the absence of periodic membrane current. Occurrence of chaotic motion, (i) in the absence of both constant and periodic membrane currents, (ii) with constant current only, (iii) with periodic membrane current only, and (iv) with both constant and periodic currents is investigated for specific parametric choices. We show how chaos sets in through a cascade of period doubling bifurcations. We then demonstrate the possibility of control of chaos using various control mechanisms. Specifically, we show the control of chaos by (i) adaptive control mechanism, (ii) periodic parametric perturbation and (iii) stabilization of unstable periodic orbits.

Animals↗

The giant (gt) mutants of Drosophila melanogaster alter DNA metabolism.

Abnormalities in DNA metabolism have been found in third-instar females of Drosophila melanogaster that are heteroallelic or homoallelic for X-chromosomal giant (gt) mutations. Analysis of DNA metabolism in larval brain ganglia was carried out using alkaline sucrose gradient centrifugation, incorporation assays and a neutral filter elution assay. These analyses show that gt stocks synthesize DNA of a reduced molecular weight, have an unusually high frequency of spontaneous single and double-strand breaks, and exhibit a reduction in the normal inhibition of DNA synthesis following treatment with UV and the carcinogen AAAF. These phenomena are not associated with a defect in the repair of X-ray induced DNA breaks nor are they accompanied by any alterations in chromosome stability. Analysis of homozygous 1(2)gl larvae also reveal that these phenomena are specific to the gt locus and are thus not attributable solely to an extended developmental program. These findings strengthen the suggestion that the genetic instability associated with gt is related to perturbations in chromosome metabolism (Green 1982).

Acetoxyacetylaminofluorene↗

Learning feedforward control using a dilated B-spline network: frequency domain analysis and design.

This paper presents a frequency-domain analysis and design approach for a learning feedforward controller (LFFC) using a dilated B-spline network. The LFFC acts as an add-on element to the existing feedback controller (FBC). The LFFC signal is updated iteratively based on the FBC signal of the previous iteration as the task repeats. Similar to proportional-integral-derivative controller tuning, there are only two parameters to adjust: The B-spline support width and the learning gain. The effect of dilation in the B-spline network is discussed. Detailed design formulae are given based on a stability analysis. As an illustration, simulation results on the path tracking control of a wheeled mobile robot are presented.

Artificial Intelligence↗

Differential learning algorithms for decorrelation and independent component analysis.

Decorrelation and its higher-order generalization, independent component analysis (ICA), are fundamental and important tasks in unsupervised learning, that were studied mainly in the domain of Hebbian learning. In this paper we present a variation of the natural gradient ICA, differential ICA, where the learning relies on the concurrent change of output variables. We interpret the differential learning as the maximum likelihood estimation of parameters with latent variables represented by the random walk model. In such a framework, we derive the differential ICA algorithm and, in addition, we also present the differential decorrelation algorithm that is treated as a special instance of the differential ICA. Algorithm derivation and local stability analysis are given with some numerical experimental results.

Acoustic Stimulation↗