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PubMed1976

[Bacteriochlorophyll fluorescence changes related to the bacteriopheophytin photoreduction in the chromatophores of purple sulfur bacteria].

It is shown that illumination of chromatophores of sulfur bacterium Chromatium minutissimum at Eh of the medium --200 mV divided by --620 mV (when the photooxidation of pigment P890 is completely inhibited) induces a decrease in bacteriochlorophyll fluorescence yield, reversible in the dark. Under these conditions a reversible photoreduction of bacteriopheophytin is detected (bleaching of absorption bands at 543 and 760 nm and development of a band at 650 nm), which is accompanied by a blue shift of the absorption band at 8 nm. As a possible interpretation of these effects the suggestion is made on the function of bacteriopheophytin as a primary electron acceptor in reaction centers of bacteria. The bacteriopheophytin photoreduction, followed by a decrease in fluorescence yield, is also observed in other sulfur bacteria, Thiocapsa roseopersicina and Ectothiorodospira shaposhnikovii, but it is not detected in nonsulfur bacteria, Rhodospirillum rubrum and Rhodopseudomonas spheroides. This is considered as an evidence for the difference in the functional organization of the reaction centers of these two groups of bacteria,

Bacterial Chromatophores↗

PubMedDate not supplied

[Use of urea by purple bacteria].

Strains of purple sulfur bacteria (Chromatium minutissimum, Ectothiorhodospira shaposhnikovii, Thiocapsa roseopersicina, Lamprobacter modestohalophilus) and nonsulfur bacteria (Rhodopseudomonas palustris, Rh. spheroides, Rhodospirillum rubrum) grow in media containing urea as a source of nitrogen at concentrations from 0.5 to 5.0%. They can also utilize the carbon of urea and thus grow in the absence of bicarbonate. Urea is decomposed by all the studied purple bacteria with the participation of urease. In a number of strains, the enzyme is inducible and is synthesized only in the presence of urea. However, it is constitutive in certain purple bacteria (L. modestohalophilus, Rh. palustris, Rh. spheroides). The strains of purple bacteria differ in the activity of urease and in its susceptibility to ammonium ions.

Chromatiaceae↗

PubMedDate not supplied

[Enzymes of carbohydrate metabolism in phototrophic bacteria].

Purple sulphur bacteria (Chromatium minutissimum, Ectothiorhodospira shaposhnikovii, Thiocapsa roseopersicina), non-sulphur bacteria (Rhodopseudomonas palustris Rh. viridis), and green sulphur bacteria (Chlorobium limicola f. thiosulfatophillum) contain all enzymes of the fructose diphosphate pathway of carbohydrate transformation, and also glucose-6-phosphate dehydrogenase. The activity of fructose diphosphate aldolase, triose phosphate dehydrogenase, and glucose-6-phosphate dehydrogenase increased in the cultures of Th. roseopersicina and C. limicola f. thiosulfatophillum when they were grown in the presence of glucose. The activity of 6-phosphogluconate dehydrogenase in these bacteria was very low.

Acetates↗

PubMed1992

Assembly of plant ferredoxin-NADP+ oxidoreductase in Escherichia coli requires GroE molecular chaperones.

We have recently reported the expression in Escherichia coli of an enzymatically competent ferredoxin-NADP+ oxidoreductase from cloned pea genes encoding either the mature enzyme or its precursor protein (Ceccarelli, E. A., Viale, A. M., Krapp, A. R., and Carrillo, N. (1991) J. Biol. Chem. 266, 14283-14287). Processing to the mature form by bacterial protease(s) and FAD assembly occurred in the bacterial cytosol. Expression of ferredoxin-NADP+ reductase in chaperonin-deficient (groE-) mutants of E. coli resulted in partial reductase assembly at permissive growth temperatures (i.e. 30 degrees C), and in total breakdown of holoenzyme assembly, and accumulation as aggregated inclusion bodies at non-permissive temperatures (i.e. 42 degrees C). Coexpression in these mutants of a cloned groESL operon from the phototrophic bacterium Chromatium vinosum resulted in partial or total recoveries of ferredoxin-NADP+ reductase assembly. The overall results indicate that bacterial chaperonins are required for the productive folding/assembly of eucaryotic ferredoxin-NADP+ reductase expressed in E. coli.

Bacterial Proteins↗

PubMed1992

Protein control of iron-sulfur cluster redox potentials.

The relationship between the three-dimensional structures of iron-sulfur proteins and the redox potentials of their iron-sulfur clusters is of fundamental importance. We report calculations of the redox potentials of the [Fe4S4(S-cys)4]-2/-3 couple in four crystallographically characterized proteins: Azotobacter vinelandii ferredoxin I, Peptococcus aerogenes ferredoxin, Bacillus thermoproteolyticus ferredoxin, and Chromatium vinosum high potential iron protein (HiPIP). Our calculations use the "protein dipoles Langevin dipoles" microscopic electrostatic model, which includes both protein and solvent water. The variations in calculated redox potentials are in excellent agreement with experimental data. In particular, our results confirm the important role of amide groups close to the cluster in separating the potential of C. vinosum HiPIP from those of the other three proteins. However, the potentials of these latter exhibit a substantial range despite extremely similar amide group environments of their clusters. Our results show that the potentials in these proteins are tuned in part by varying the access of solvent water to the neighborhood of the cluster. Our calculations provide the first successful quantitative modeling of the protein control of iron-sulfur cluster redox potentials.

Azotobacter vinelandii↗

PubMed1990

Proton NMR study of the comparative electronic/magnetic properties and dynamics of the acid in equilibrium with alkaline transition in a series of ferricytochromes c'.

The proton NMR spectra of ferricytochrome c' from Rhodopseudomonas palustris, Rhodospirillum molischianum, Rhodospirillum rubrum, and Chromatium vinosum have been investigated for the purpose of further elucidating the common spectral and/or structural properties for this subclass of cytochromes in the acidic and alkaline forms, and to characterize in detail the dynamics and structural basis for this acid in equilibrium with alkaline transition. The identification of strongly upfield-shifted meso-H peaks in all but C. vinosum ferricytochrome c' at weakly acidic to neutral pH is consistent with, but not proof for, S = 3/2 character for the spin state of C. vinosum, but argues for primarily S = 5/2 character for the other three proteins. Hence, we conclude that the quantum mechanically mixed S = 3/2, S = 5/2 spin ground state of neutral pH C. vinosum ferricytochrome c' is an anomaly rather than a characteristic of this class of proteins. The 1H NMR spectra of ferricytochromes c' at alkaline pH again exhibit strong similarities among all members except that for C. vinosum. Two pK values are observed for ferricytochrome c' for R. molischianum and C. vinosum, of which the higher value pK is accompanied by significant line broadening, as found earlier for the proteins from both R. rubrum and R. palustris. Detailed analysis of the exchange line broadening for all four proteins reveals that hydrolysis is the rate-limiting step, with base catalysis occurring at about the same rate in the diffusion control limit for all four proteins. The variable first order dissociation rates of the alkaline species reveal differential stabilities of that species in the order R. palustris greater than R. molischianum greater than R. rubrum much greater than C. vinosum. The rates of exchange of the axial His imidazole labile proton was determined by linewidth and saturation transfer analysis and shown to occur via base catalysis at the same diffusion control rate as found for the acid----alkaline transition for the oxidized protein, and support the proposal that the acid----alkaline transition involves simply the abstraction of a proton from the neutral His imidazole to yield an imidazolate.

Chromatium↗

PubMedDate not supplied

[Possible pathways for acetyl-CoA formation by purple bacteria].

Purple sulfur (Ectothiorhodospira shaposhnikovii, Chromatium minutissimum, Lamprobacter modestohalophilus, Thiocapsa roseopersicina) and nonsulfur (Rhodospirillum rubrum, Rhodopseudomonas palustris, Rhodopseudomonas spheroides) bacteria are capable of forming acetyl-CoA synthetase, phosphotransacetylase and acetokinase independent of the medium composition and growth conditions. In all of the purple sulfur bacteria with an exception of E. shaposhnikovii, the activity of acetokinase is much higher than in purple nonsulfur bacteria. Apart from being involved in the synthesis of acetyl-CoA, such enzymes as phosphotransacetylase, acetokinase and adenylate kinase may play an important role in energy processes of some purple bacteria in the dark.

Acetyl Coenzyme A↗

PubMed1990

Redox properties of several bacterial ferredoxins using square wave voltammetry.

The equilibrium reduction potential of the 2[4Fe-4S] ferredoxin (Fd) isolated from four different bacterial strains was determined at a methyl viologen-modified gold electrode using square wave voltammetry. The observed reduction potential at pH 8 for Clostridium thermoaceticum Fd was -385 mV; Clostridium pasteurianum, -393 mV; Clostridium thermosaccharolyticum, -408 mV; and Chromatium vinosum, -460 mV versus normal hydrogen electrode at 25 degrees C. The reduction potential of the C. pasteurianum Fd was found to be pH independent from pH 6.4 to 8.7, indicating that the electron transfer mechanism does not involve proton exchange. In contrast, the reduction potential of the C. thermosaccharolyticum Fd was found to be pH dependent from pH 6.4 to 8.7, with pKox approximately 7 and pKred approximately 7.5. The +30 mV change in reduction potential from pH 8.7 to 6.4 was attributed to an electrostatic interaction between the iron-sulfur cluster II and the protonated histidine 2 residue located about 6 A away. The Ch. vinosum Fd interacted reversibly at the methyl viologen-modified gold electrode, and its reduction potential was verified using visible spectroelectrochemistry. The reduction potential of Ch. vinosum Fd was found to be 30 mV more positive than previously reported. The similarities of the bacterial Fd reduction potentials are discussed in terms of the homology of their primary structure as reflected by the similarities in the visible and circular dichroic spectra.

Chromatium↗

PubMed1968

Molecular diversity of the ribulose-1,5-diphosphate carboxylase from photosynthetic microorganisms.

The ribulose-1,5-diphosphate carboxylases from green and blue-green algae and the purple sulfur photosynthetic bacterium Chromatium are proteins with high molecular weights and with sedimentation coefficients of 18 to 21 Svedberg units. The carboxylases of the Athiorhodaceae are smaller, that of Rhodospirillum rubrum being a 6.2S molecule, and those of the two species of Rhodopseudomonas are 12S and 14.5S.

Carboxy-Lyases↗

PubMedDate not supplied

[Molecular organization of bacteriochlorophyll in the light-converging B850 complex of purple bacteria].

The light-harvesting bacteriochlorophyll-protein complex B850 has been isolated from two species of purple bacteria, Rhodopseudomonas palustris and Chromatium minutissimum. Absorption and fluorescence spectra at 20 degrees and--196 degrees C of this complex were registered. Second derivatives of the absorption spectra, Stepanov's relation and computer curve analyses in terms of asymmetrical Gaussian components show that absorption spectra consist of five and fluorescence spectra--of three components. These components were analysed in terms of exciton interaction among bacteriochlorophyll molecules. Data obtained were used for building-up of the molecular model of the complex.

Bacteriochlorophylls↗

PubMedDate not supplied

[Linear dichroism of pigments associated with spherical chromatophores. Models of orientation in polyacrylamide gels].

Linear dichroism and orientation of pigments in chromatophores of photosynthetic bacteria Chromatium minutissimum and Rhodospirillum rubrum using a novel method of orientation in polyacrylamide gel was studied. A model is proposed for orientation of spherical membranes of chromatophores or other similar vesicules. The value of linear dichroism is derived for known deformation of the gel and a certain angle between the transition dipole and a unit vector perpendicular to the membrane plane. The analysis of linear dichroism spectra permits calculation of angles between the normal to the membrane and the transition dipoles in Chr. minutissimum 65 degrees +/- 1.5 degrees (890 nm absorption band), 63 degrees +/- 1 degree (860 nm), 63 degrees +/- 1 degree (800 nm), 45.5 degrees +/- 1 degree (590 nm), 50.5 degrees +/- 0.5 degree (450--550 nm) and in Rsp. rubrum: 71 degrees +/- 1.5 degree (890 nm), 66.5 degrees +/- 1 degree (870 nm), 69 degrees +/- 1.5 degree (800 nm), 37 degrees +/- 0.5 degree (590 nm), 49.5 degrees +/- 0.5 degree (450--550 nm). The 860 nm band shift to shorter wave-lengths observed in Chr. minutissimum chromatophores treated with 0.01 M potassium ferricyanide is not related to reorientation of transition dipoles, but rather to certain changes of lipid-protein environment.

Acrylic Resins↗

PubMedDate not supplied

[Ratio of metals during changes in the metabolism of photosynthetic bacteria].

The content of polyvalent metals was determined in the photosynthetic bacteria Rhodopseudomonas capsulata (Athiorhodaceae) and Chromatium vanda (Thiorhodaceae) isolated from the sediments of Lake Vanda in the Antarctic when the conditions of growth, photoheterophic and photoautotrophic, were changed. The ratio between Fe and Mn, Cu, V, Ni, Co, Cr was studied. The utilization of all polyvalent metals, Mn and Cr in particular, relatively increased in the conditions of autotrophic growth. Changes in the composition of bacterial cells (the content of protein, lipophilic substances, flavin) and their enzymatic activity (hydrogenases) were also assayed. Apparently, chemical composition may be used as a criterion for determining the taxonomy of organisms and the ecological conditions of their habitat.

Chromatium↗

PubMedDate not supplied

[Carbohydrate metabolism enzymes of purple sulfur-bacteria during growth in the dark].

Ectothiorhodospira shaposhnikovii, Chromatium minutissimum and Thiocapsa roseopersicina were grown in the dark under anaerobic conditions on media containing glucose or fructose and organic acids. Their cell contained the following enzymes of the fructose diphosphate pathway: phosphofructokinase, fructose diphosphate aldolase, and 3-phosphoglyceraldehyde dehydrogenase. The activity of fructose diphosphate aldolase was higher in the cells grown in the dark than in the cells grown in the light. The same enzymes of the tricarboxylic acid cycle were found in the cells cultivated in the dark on media containing organic acids as in the cells grown in the light, though the activity of some enzymes was lower. Only the activity of isocitrate lyase increased in the cells cultivated in the dark on a medium containing acetate.

Acetates↗

PubMed1977

New stereochemical analogies between iron-sulfur electron transport proteins.

Active sites of Chromatium high potential iron protein (HiPIP) and Pseudomonas Aerogenes ferredoxin can be brought into equivalent orientations by assuming that their Fe4S4Sgamma4 clusters have the effective symmetry of the non-axial molecular point group Cs. Previously undetected analogies between the two proteins emerge as a result of selecting a common orientation in this mammer. Polypeptide segments connecting Cys 46 to Cys 63 in HiPIP and Cys 18 to Cys 35 in ferredoxin are analogous in the sense that they are the same length, they connect equivalent cysteinyl sulfur atoms, and they have similar, twisted antiparalled beta conformations. Tyrosine residues 19 (HiPIP) and 2 (ferredoxin) are analogous in the sense that they interact closely with equivalent inorganic sulfur atoms. To a good approximation, interactions with the polypeptide backbone and with tyrosine side chains in the two proteins place their Fe4S4Sgamma4 moieties into diastereomeric environments, which would be expected to induce different physical and chemical behavior. Circular dichroism spectra of native and super reducible HiPIP (Cammack, R. (1973) Biochem. Biophys. Res. Commun. 54, 548-554) suggest that this relationship can help to explain the contrasting oxidoreduction properties of the two proteins.

Binding Sites↗

PubMedDate not supplied

[Growth of purple sulfur bacteria in the dark in anaerobic conditions].

Phototrophic sulphur bacteria Chromatium minutissimum 1 C, Ectothiorhodospira shaposhnikovii 1, and various strains of Thiocapsa roseopersicina grow in the dark under anaerobic conditions (hydrogen or argon) on organic media in the presence of sulphide, thiosulphate or molecular sulphur. Ect. shaposhnikovii grows also in the presence of sulphite, cysteine, methionine, glutathione, and, to a less degree, sulphates. Cultures of Ect. shaposhnikovii growing in the dark under anaerobic conditions assimilate fructose and liberate pyruvate, lactate, formiate and traces of acetate into the medium. These cultures can grow in the dark under anaerobic conditions assimilating not only fructose but also various C4-dicarboxylic acids, lactate, pyruvate, butyrate, and acetate. Thiocapsa grows on media containing malate, succinate, lactate, pyruvate, and acetate. Thiocapsa reseopersicina SL assimilates in the dark under anaerobic conditions fructose, glucose, glycerol, pyruvate, lactate, and acetate.

Anaerobiosis↗

PubMed1995

Rp-phosphorothioate modifications in RNase P RNA that interfere with tRNA binding.

We have used Rp-phosphorothioate modifications and a binding interference assay to analyse the role of phosphate oxygens in tRNA recognition by Escherichia coli ribonuclease P (RNase P) RNA. Total (100%) Rp-phosphorothioate modification at A, C or G positions of RNase P RNA strongly impaired tRNA binding and pre-tRNA processing, while effects were less pronounced at U positions. Partially modified E. coli RNase P RNAs were separated into tRNA binding and non-binding fractions by gel retardation. Rp-phosphorothioate modifications that interfered with tRNA binding were found 5' of nucleotides A67, G68, U69, C70, C71, G72, A130, A132, A248, A249, G300, A317, A330, A352, C353 and C354. Manganese rescue at positions U69, C70, A130 and A132 identified, for the first time, sites of direct metal ion coordination in RNase P RNA. Most sites of interference are at strongly conserved nucleotides and nine reside within a long-range base-pairing interaction present in all known RNase P RNAs. In contrast to RNase P RNA, 100% Rp-phosphorothioate substitutions in tRNA showed only moderate effects on binding to RNase P RNAs from E. coli, Bacillus subtilis and Chromatium vinosum, suggesting that pro-Rp phosphate oxygens of mature tRNA contribute relatively little to the formation of the tRNA-RNase P RNA complex.

Base Sequence↗

PubMed1999

Amino acid sequences of two high-potential iron-sulfur proteins (HiPIPs) from the moderately halophilic purple phototrophic bacterium, Rhodospirillum salinarum.

The amino acid sequences of two very different high-potential iron-sulfur protein (HiPIP) isozymes have been determined from the moderately halophilic purple phototrophic bacterium, Rhodospirillum salinarum. Iso-1 HiPIP, which is monomeric and contains 57 amino acid residues, is most similar to the Thiobacillus ferrooxidans iron-oxidizing enzyme (45% identity and a 6-residue deletion). On the other hand, iso-2 HiPIP, which is isolated as an oligomer, contains a peptide chain with 54 amino acid residues. It is the smallest reported to date and is only 31% identical to iso-1 HiPIP. A massive deletion of 17 residues is found at the N-terminus, such that only 2 residues remain prior to the first cysteine. Iso-2 HiPIP also has a 12-residue insertion and a 5-residue deletion. Prior to this study, there were only 2 absolutely conserved residues (Tyr 19 and Gly 75, Chromatium numbering) in addition to the 4 iron-sulfur cluster binding cysteine residues among the 13 HiPIPs sequenced to date. We found that Tyr 19 is absent in iso-2 HiPIP along with the entire N-terminal loop. Moreover, Gly 75 is substituted in both R. salinarum HiPIPs. These characteristics make the R. salinarum HiPIPs, and especially iso-2, the most divergent yet characterized.

Amino Acid Sequence↗

PubMed1996

High-resolution crystal structures of two polymorphs of cytochrome c' from the purple phototrophic bacterium rhodobacter capsulatus.

The structures of two polymorphs of cytochrome c' from Rhodobacter capsulatus (RCCP) strain M110 have been determined by the molecular replacement method. Iron anomalous scattering data were used to confirm the molecular replacement solution. The structures were refined at 1.72 angstrom and 2.0 angstrom resolution to R-values of 15.0% and 16.3%, respectively. The RCCP molecule is a dimer and each of the identical 129 residue subunits folds as a four-helical bundle with a covalently bound heme group in the center. This structural motif resembles that of cytochromes c' reported from Rhodospirillum molischianum (RMCP), Rhodospirillum rubrum (RRCP), Chromatium vinosum (CVCP), Achromobacter xyloseoxidans (AXCP) and Alcaligenes denitrificans (ADCP). However, the architecture of the RCCP dimer, that is, the mode of association of subunits, differs substantially from that of the other cytochromes c'. In the RCCP dimer, the subunits are roughly parallel with each other and only helix B of each subunit participates in formation of the dimer interface. Measurement of the solvent-accessible surface area indicates that the dimer interface is smaller in RCCP than in the other cytochromes c'. In RMCP, CVCP, RRCP, AXCP and ADCP the subunits cross each other to form an X shape, and two helices, A and B, of each subunit interact across the dimer interface. These results are consistent with hydrodynamic measurements, which show that there is an equilibrium between monomers and dimer in RCCP, whereas the dimer is the predominant form in the other cytochromes c' for which structures have been determined. Structural comparison of the six cytochromes c' reveal that they can be divided into two groups. In group 1 cytochromes c', CVCP and RCCP, the amino acid sequences and the folding of subunits are arranged in such a way as to allow the formation of a deep channel between helices B and C with direct solvent accessibility to the heme sixth ligand position. There is no such channel in group 2 cytochromes c', RMCP, RRCP, AXCP and ADCP. This may account, in part, for the differences in carbon monoxide binding.

Amino Acid Sequence↗