Genetic drift in exogamous marriage systems.
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Female↗
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United States Department of Agriculture-Agricultural Research Service research in application technology for pest management.
A research summary is presented that emphasizes ARS achievements in application technology over the past 2-3 years. Research focused on the improvement of agricultural pesticide application is important from the standpoint of crop protection as well as environmental safety. Application technology research is being actively pursued within the ARS, with a primary focus on application system development, drift management, efficacy enhancement and remote sensing. Research on application systems has included sensor-controlled hooded sprayers, new approaches to direct chemical injection, and aerial electrostatic sprayers. For aerial application, great improvements in on-board flow controllers permit accurate field application of chemicals. Aircraft parameters such as boom position and spray release height are being altered to determine their effect on drift. Other drift management research has focused on testing of low-drift nozzles, evaluation of pulsed spray technologies and evaluation of drift control adjuvants. Research on the use of air curtain sprayers in orchards, air-assist sprayers for row crops and vegetables, and air deflectors on aircraft has documented improvements in application efficacy. Research has shown that the fate of applied chemicals is influenced by soil properties, and this has implications for herbicide efficacy and dissipation in the environment. Remote sensing systems are being used to target areas in the field where pests are present so that spray can be directed to only those areas. Soil and crop conditions influence propensity for weeds and insects to proliferate in any given field area. Research has indicated distinct field patterns favorable for weed growth and insect concentration, which can provide further assistance for targeted spraying.
Agriculture↗
Spatial and space-time correlations in systems of subpopulations with genetic drift and migration.
The geographic distribution of genetic variation is an important theoretical and experimental component of population genetics. Previous characterizations of genetic structure of populations have used measures of spatial variance and spatial correlations. Yet a full understanding of the causes and consequences of spatial structure requires complete characterization of the underlying space-time system. This paper examines important interactions between processes and spatial structure in systems of subpopulations with migration and drift, by analyzing correlations of gene frequencies over space and time. We develop methods for studying important features of the complete set of space-time correlations of gene frequencies for the first time in population genetics. These methods also provide a new alternative for studying the purely spatial correlations and the variance, for models with general spatial dimensionalities and migration patterns. These results are obtained by employing theorems, previously unused in population genetics, for space-time autoregressive (STAR) stochastic spatial time series. We include results on systems with subpopulation interactions that have time delay lags (temporal orders) greater than one. We use the space-time correlation structure to develop novel estimators for migration rates that are based on space-time data (samples collected over space and time) rather than on purely spatial data, for real systems. We examine the space-time and spatial correlations for some specific stepping stone migration models. One focus is on the effects of anisotropic migration rates. Partial space-time correlation coefficients can be used for identifying migration patterns. Using STAR models, the spatial, space-time, and partial space-time correlations together provide a framework with an unprecedented level of detail for characterizing, predicting and contrasting space-time theoretical distributions of gene frequencies, and for identifying features such as the pattern of migration and estimating migration rates in experimental studies of genetic variation over space and time.
Biometry↗
In vivo comparison of two mixed venous saturation catheters.
The accuracy and stability of mixed venous saturation pulmonary arterial catheters under adverse physiologic conditions has not been assessed. Either a Shaw Opticath catheter (three-wavelength) or a Swan-Ganz oximetry TD catheter (two-wavelength) was calibrated in vitro and positioned in the pulmonary artery in each of ten mongrel dogs. The in vivo saturations were compared to measured saturations from anaerobically collected mixed venous blood analyzed with a reference cooximeter at each step in the protocol. Oxygen delivery was varied to obtain a broad range of mixed venous saturations (Sv-O2) by altering inspired oxygen concentration, isovolemic hemodilution, reducing cardiac output, and increasing afterload. Calculated oxygen consumption varied from 128 to 311 ml/min. Pre-insertion calibration for both catheter types compared favorably with the cooximeter prior to physiologic manipulations, although the three-wavelength catheter more closely approximated the cooximeter. The three-wavelength catheter tracked measured Sv-O2 accurately under adverse conditions for up to 10 h (R = .994; SEE = 2.2%). The two-wavelength catheter tended to drift under the same conditions (R = .808; SEE = 10.6%). At the conclusion of the experiment, the two-wavelength system was uniformly higher then the cooximeter by 5-31% with a mean of 21% (P less than or equal to .003 as compared with the initial difference by paired Student's t test). Pending further analysis of the tendency of the two-wavelength system to drift it would seem prudent to limit its clinical application.
Anesthesia, General↗
Frameless stereotactic guided neurosurgery: clinical experience with an infrared based pointer device navigation system.
An infrared based frameless stereotactic navigation device (Easy Guide Neuro) was investigated for its clinical applicability, registration/application accuracy and limitations in a standard operating room set-up. In a five-month period 40 frameless stereotactic procedures (23 female, 17 male, mean age 46.4, yrs range 10-83) including 36 craniotomies and 4 spinal surgery procedures were performed. Image registration, data transfer and operation planning using skin fixed fiducials (between 5-10, mean 6.6) and CCT in 12 patients/MRI in 28 patients, generally was done the day before surgery. Clinical applicability was proven in all procedures with an additional time for pre-operative imaging and system application in the OR of 50 min mean (35-120 range). A useful registration was achieved in 39/40 patients (97.5%) with a registration accuracy of 3.4 mm (range 1.8-6.7) for brain surgery cases and 14.4 mm (6.8-25) for spine cases. This resulted in intra-operative application accuracy values for brain surgery of 4.2 mm mean (range 1-12). Enhanced registration/application accuracy values over the test period from 4.2/3.8 mm mean (Cases 1-20) up to 3.2/2 mm mean (Cases 21-40) was observed. In spinal surgery an application accuracy of 11.3 mm mean (range 5-20) was found. An intra-operative re-calibration because of system-head drift was necessary in none of the patients, nevertheless, application accuracy degradation due to brain shift was detected in every case. In conclusion, the system allowed a time sufficient accurate frameless intra-operative localisation guidance in cavernoma, meningioma, glioma, and brain metastasis surgery. In spinal surgery, the application accuracy exceeded clinical usefulness due to high registration inaccuracy using skin markers.
Adolescent↗
Continuous measurement of oxygen consumption by pancreatic islets.
The rate of oxygen consumption is an important measure of mitochondrial function in all aerobic cells. In pancreatic beta cells, it is linked to the transduction mechanism that mediates glucose-stimulated insulin secretion. However, measurement of oxygen consumption over long periods of time is technically difficult owing to the error resulting from baseline drift and the challenge of measuring small changes in oxygen tension. We have adapted an ultrastable oxygen sensor based on the detection of the decay of the phosphorescent emission from an oxygen-sensitive dye to a previously developed islet flow culture system. The drift of the sensor is approximately 0.3%/24 h, allowing for the continuous measurement of oxygen consumption by 300 islets (or about 6 x 10(5) cells) for hours or days. Rat islets placed in the perifusion chamber for 24 h were well maintained as reflected by membrane integrity, insulin secretion, and oxygen consumption. Both acute changes in oxygen consumption as induced by glucose and chronic changes as induced by sequential pulses of azide were resolved. The features of the flow culture system--aseptic conditions, fine temporal control of the composition of the media, and the collection of outflow fractions for measurement of insulin, and other products--facilitate a systematic approach to assessing metabolic and functional viability in responses to a variety of stimuli. Applications to the measurement of effects of hypoxia on insulin secretion, membrane integrity, and the redox state of cytochromes are demonstrated. The system has particular application to the field of human islet transplantation, where assessment and the study of islet viability have been hampered by a lack of experimental methods.
Animals↗
A direct, highly sensitive assay for cytochrome P-450 catalyzed O-deethylation using a novel coumarin analog.
The microsomal O-deethylation of a novel coumarin analog, 7-ethoxy-4-trifluoromethylcoumarin (EFC), to a fluorescent product was characterized. Results indicate that this analog provides a rapid, convenient and highly sensitive means to assay cytochrome P-450-mediated metabolism. Like microsomal 7-ethoxycoumarin (7-EC) O-deethylation, EFC O-deethylation responded to both phenobarbital was greater than that seen with 7-EC (5- to 6-fold over control after 50 mg/kg/day for 4 days in Sprague-Dawley rats compared to approximately 2-fold for 7-EC). Since the reaction was monitored by direct fluorometry of the product, any departures from linearity under a particular set of reaction conditions (e.g. with highly induced samples) were immediately apparent. In the absence of an NADPH-regenerating system, background drift was very low (less than 0.01 fluorescent units), so the sensitivity of the assay was limited primarily by that of the fluorometer employed. This makes the assay particularly useful in situations where test material is limited, e.g. when measuring activity in cultured hepatocytes. Its simplicity, reproducibility, and response to a variety of inducing agents also make it suitable for a rapid screening assay for cytochrome P-450 induction.
7-Alkoxycoumarin O-Dealkylase↗
The interaction among evolutionary forces in the pathogenic fungus Mycosphaerella graminicola.
The population genetic dynamic of a species is driven by interactions among mutation, migration, drift, mating system, and selection, but it is rare to have sufficient empirical data to estimate values for all of these forces and to allow comparison of the relative magnitudes of these evolutionary forces. We combined data from a mark-release-recapture experiment, extensive population surveys, and computer simulations to evaluate interactions among these evolutionary forces in the pathogenic fungus Mycosphaerella graminicola. The results from these studies showed that, on average, the immigration rate was 0.027, the fraction of outcrossing individuals was 0.035, and the selection coefficient associated with immigrants was 0.106 each generation. We also estimated that effective population sizes for this fungus were larger than 24,000 and the mutation rate for the RFLP markers used in surveys and field experiments was approximately 4 x 10(-5). Computer simulations based on these estimates indicate that, on average, the global population of M. graminicola has reached equilibrium. Population genetic parameters including number of alleles, gene diversity, and population subdivision estimated from the computer simulations were surprisingly close to empirical estimates. Simulations also revealed that random drift is the major evolutionary force decreasing genetic variation in this fungus, followed by natural selection. The major force adding to genetic variation was mutation, followed by gene flow and sexual recombination. Gene flow played the leading role in decreasing population subdivision while natural selection was the major factor increasing population subdivision.
Ascomycota↗
A high performance liquid chromatography - inductively coupled plasma-mass spectrometry interface employing desolvation for speciation studies of platinum in chemotherapy drugs.
A novel interface between high performance liquid chromatography (HPLC) and inductively coupled plasma-mass spectrometry (ICP-MS) is described. The eluent from the HPLC is nebulised into a heated cyclone spray-chamber and the solvent removed using a Nafion membrane drier, held at 75 degrees C, and a cryogenic condenser. The condenser consists of 6 Peltier heat pumps connected to liquid cooled aluminium blocks. At a nebuliser gas flow rate of 0.6 l min(-1), the membrane drier removes 58% of the vapour and the Peltier condenser 75% of the remaining vapour, i.e. a total desolvation efficiency of 89%. This enables the use of HPLC solvents which otherwise would destabilise the ICP, e.g. 100% acetonitrile or methanol, and permits the use of solvent gradients with minimal baseline drift. The system has been applied to the determination of platinum species in an organoplatinum drug used for chemotherapy in human plasma ultrafiltrate of patients treated with this new drug (JM-216). The limit of detection for platinum species has been 0.6 ng nl(-1) (i.e. 120 pg of Pt) and several species have been separated with good resolution.
Journal Article↗
Structural instability of models of sexual selection.
Models for sexual selection by the coevolution of female preference and a male trait have as a generic feature the existence of a neutrally stable line of equilibria up and down which the system can drift at random. However, this feature is structurally unstable since it is destroyed by introducing either mutation or weak direct selection on female preference into the model, to be replaced by a single equilibrium (or a finite set of disconnected equilibria). This process is investigated in detail under a simple but general population genetic model. It is concluded that the level of female preference is determined by mutation, selection, and genetic drift acting directly on it, and drags the male trait along with it along the line of equilibria. More attention should be paid to selective forces acting directly on female preference.
Biological Evolution↗
Path-integral formulation of stochastic processes for exclusive particle systems
We present a systematic formalism to derive a path-integral formulation for hard-core particle systems far from equilibrium. Writing the master equation for a stochastic process of the system in terms of the annihilation and creation operators with mixed commutation relations, we find the Kramers-Moyal coefficients for the corresponding Fokker-Planck equation (FPE), and the stochastic differential equation (SDE) is derived by connecting these coefficients in the FPE to those in the SDE. Finally, the SDE is mapped onto field theory using the path integral, giving the field-theoretic action, which may be analyzed by the renormalization group method. We apply this formalism to a two-species reaction-diffusion system with drift, finding a universal decay exponent for the long-time behavior of the average concentration of particles in arbitrary dimension.
Journal Article↗
Interplay of chemotaxis and chemokinesis mechanisms in bacterial dynamics.
Motivated by observations of the dynamics of Myxococcus xanthus, we present a self-interacting random walk model that describes the competition between chemokinesis and chemotaxis. Cells are constrained to move in one dimension, but release a chemical chemoattractant at a steady state. The bacteria sense the chemical that they produce. The probability of direction reversals is modeled as a function of both the absolute level of chemoattractant sensed directly under each cell as well as the gradient sensed across the length of the cell. If the chemical does not degrade or diffuse rapidly, the one-dimensional trajectory depends on the entire past history of the trajectory. We derive the corresponding Fokker-Planck equations, use an iterative mean-field approach that we solve numerically for short times, and perform extensive Monte Carlo simulations of the model. Cell positional distributions and the associated moments are computed in this feedback system. Average drift and mean squared displacements are found. Crossover behaviors among different diffusion regimes are found.
Bacterial Physiological Phenomena↗
Hamiltonian chaos acts like a finite energy reservoir: accuracy of the Fokker-Planck approximation.
The Hamiltonian dynamics of slow variables coupled to fast degrees of freedom is modeled by an effective stochastic differential equation. Formal perturbation expansions, involving a Markov approximation, yield a Fokker-Planck equation in the slow subspace which respects conservation of energy. A detailed numerical and analytical analysis of suitable model systems demonstrates the feasibility of obtaining the system specific drift and diffusion terms and the accuracy of the stochastic approximation on all time scales. Non-Markovian and non-Gaussian features of the fast variables are negligible.
Journal Article↗
Simple interferometric fringe stabilization by charge-coupled-device-based feedback control.
A method for producing stabilized interference patterns for ultraviolet interference lithography using a CCD camera as the detector element is described. Intensity data obtained from the CCD element are filtered in software to minimize speckle and detector noise effects as well as to determine the relative phase of the interfering beams. A control signal is then issued to correct the fringe drift. The system allows rapid reconfiguration of the lithography setup with minimum realignment of optical components.
Journal Article↗
[Adaptive drift detection and intelligent alarm systems].
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Algorithms↗
The effect of photodynamic therapy on a retinoblastoma-like tumour. An experimental in vitro and in vivo study on the potential use of photodynamic therapy in the treatment of retinoblastoma.
A retinoblastoma-like tumour has been established and characterized in terms of growth rates in vitro and in vivo, and by histopathology and chromosome analysis. Injected tumour cells grew regularly in the vitreous body with a blood supply from the retinal vessels. The tumour tissue was histopathologically similar to that of anaplastic human retinoblastomas. Almost all the cells had a triploid chromosome number and the DNA amount in tumours was stable, suggesting a stable tumour system without drift against more anaplastic degrees. Tumour cells plated in culture flasks were grown in colonies. Evaluation of the number of clonogenic cells in treated, relative to non-treated flasks reflected a quantitative treatment response. When the cells were injected into the eyes of young rats, solid tumors were formed which grew regularly until perforation of the globes. The tumours were suitable for assessment of therapeutic response in terms of local tumour control after treatment. Photodynamic therapy (PDT) of cancers, using hematoporphyrin derivatives (HPD) and visible light, is a therapeutic modality where HPD is administered 1-5 days before local light irradiation of the tumour. The combination of HPD, light energy and oxygen produces the cytotoxic agent singlet oxygen which only exists in its active state for a few milliseconds. Using this modality, it may be possible to obtain local tumour destruction in light-irradiated areas and avoid spreading of the cytotoxic agents to other organs. The effect of PDT with purified HPD (Photofrin II) and red light has been evaluated in the characterized retinoblastoma-like tumour in vivo and in vitro. The experiments demonstrated that Photofrin II and red light destroys cells in tissue culture flasks. Local control of intraocular retinoblastoma-like tumours was obtained in up to 33% of the animals following a single treatment. Adverse effects in the present model were corneal and conjunctival damage. Generally, the effect of PDT increased with larger Photofrin II doses, higher energy doses or a shorter time interval between drug administration and light irradiation. Damage to the cornea or conjunctiva limited the maximum tolerable treatment doses in the present model. The experiments suggests that PDT is a safer treatment with Photofrin II 2.5 mg/kg and a high light energy dose than with 10 mg/kg and an equivalent lower light energy dose. In tissue culture flasks, the cell inactivation did not depend on the light energy rate but only on the total delivered energy dose. The cells had a low capacity to repair sublethal damage.(ABSTRACT TRUNCATED AT 400 WORDS)
Animals↗
Factors influencing the accuracy of the cardiac output monitoring and diagnostic unit for pneumatic artificial hearts.
The Cardiac Output Monitor and Diagnostic Unit (COMDU) has been the most widely used method to noninvasively determine cardiac output in pneumatic ventricles for the past 10 years. Clinical observation has suggested a discrepancy between the COMDU and expected cardiac outputs. In vivo tests verified and quantified this error. The error sources were examined using in vitro test conditions, with both the inflow and outflow, as well as COMDU flow readings, being analyzed. Transducer and calibration error sources were also identified, and the accuracy of the method for determining cardiac output for the in vitro test conditions was quantified. With a more accurate calibration scheme, the in vitro average error was reduced from -16.2% (range of 0.1% to -41.1%) to 0.1% (range 4.8% to -3.65). The major error sources were identified as missed inflow, transducer calibration and drift, and system variance.
Animals↗
[Work of the human visual system. Role of retinal image drift and rapid changes in retinal sensitivity in light perception].
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Color Perception↗