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Weight gain and heterosis at different stages of development of the rat.

Diallel crosses among four highly inbred lines of rats were made in order to evaluate their combining ability at 10 day intervals during postnatal growth. Analyses were undertaken to consider the relative magnitudes of different components of variation, including a heterotic effect, over a long developmental period. A general analysis of variance for least square means of body weights indicated that postnatal growth was influenced greatly by the maternal lines and to a lesser extent by the paternal line. Heterosis was measured as a statistically significant difference in body weight gain at 10 day intervals between the hybrid and either the averaged mean of the parent lines or the mean of the largest parent line. Of the effects analyzed, heterosis accounted for a major part of body weight variability in both sexes between 30 and 100 days of age but reached much higher levels in male than in female progeny. The heterotic response was most pronounced during the rapid growth phase; that is, between the ages of 20 to 50 days. Although interesting specific exceptions were observed, heterotic responses generally became more pronounced with increasing age through 100 days. Evidence for differential heterosis associated with particular lines was present in male progeny at growth stages immediately preceding and following the phase of most rapid growth. Specific combining ability, however, was generally lacking. Analyses of specific matings indicated that heterosis, in the lines tested, is a variable phenomenon which may be dependent upon the degree of genetic divergence between inbred parent lines and the combining ability of the genotype involved.

Age Factors↗

Okra-leaf accessions of the upland cotton (Gossypium hirsutum L.): genetic variability in agronomic and fibre traits.

Okra-leaf types of the upland cotton have the potential to be competitive to the normal-leaf types in yield and fibre quality, in addition to its potential resistance to insect pests and drought. Okra-leaf cotton accessions, collected at Cotton Research Institute, Faisalabad, Pakistan, were evaluated in respect of genetic variance and relative performance in half- and full-sib crosses (combining ability) for 2 years. Variation due to parents x years interaction was significant for lint percentage, seed weight and earliness index, resulting in moderately low but significant genetic variance across environments (years) for these traits. Interaction of environment with general combining ability was significant for seed yield, seed weight, and earliness index. General combining ability variation, contributed by females and males together, accounted for 71% of the total variation available for seed cotton yield, 60% of that for seed weight and height to node ratio each, and 75% of that for earliness index. Specific combining ability variation accounted for 85% and 51% of the total variation available for lint percentage and staple length, respectively. The contribution of female parents to general combining ability variation was higher than that of male parents for seed cotton yield, seed weight, height to node ratio, and earliness index. Okra-leaf accessions HR-VO-MS and HR107-NH were predicted to produce progenies having high yield, HR109-RT high lint percentage, while HR100-Okra, Gambo-Okra and HR-VO-1 were predicted to impart early crop maturity to their progenies by reason of their good general combining ability for these traits. The results also provided evidence that genes controlling high yield in HR-VO-MS and HR107-NH were different from those controlling high yield in HR109-RT. The set of genes controlling the high earliness index in HR100-Okra and that in HR-VO-MS also appeared to differ in expression.

Adaptation, Physiological↗

Maize (Zea mays L.) genetic factors for preventing fumonisin contamination.

Fusarium moniliforme and Fusarium proliferatum are the most frequently isolated fungi from maize (Zea mays L.) in Spain. Both Fusarium species produce toxins potentially dangerous for animals and humans, the fumonisins being the most significant of those toxins. White maize is preferred for human consumption, and extra care should be taken to avoid kernel mycotoxin contamination. The objectives of this study were to identify and quantify kernel infection by Fusarium spp. and contamination by fumonisin on white maize hybrids, to search for white maize sources of resistance to infection by Fusarium spp. and mycotoxin contamination, and to preliminarily study the genetics involved in such resistances. Ten F(1) single crosses derived from a diallel mating design among five white maize inbreds were evaluated in a randomized complete block design with three replications in 2002 at two locations. Fusarium verticilloides and F. proliferatum were detected on kernels of white maize hybrids cultivated in northwestern Spain. No differences in fungal infection were found among maize genotypes, but differences in fumonisin contamination were significant and could be related, in part, to differences in husk tightness. Among the genotypes studied, general combining ability (GCA) effects were the most important for resistance to fumonisin contamination. Inbreds EP10 and EC22 showed the most favorable GCA effects for husk tightness and fumonisin content, and the cross between them, EP10 x EC22, had the most favorable specific combining ability (SCA) effect for husk tightness. Inbreds EP10 and EC22 showed favorable GCA effects for fumonisin contamination and husk tightness, and the cross EP10 x EC22 was the only one with an average fumonisin level below 1 mug/g. Although this should be confirmed with more extensive studies, white maize inbreds developed from white maize landraces could be sources of resistance to fumonisin contamination.

Breeding↗

[Problems in the genetics of stress. I. Genetic analysis of the behavior of mice in a stressful situation].

Behavior of progeny of complete diallel crossing between 4 inbred strains of mice (BALB/c, C3H/He, C57BL/6, AKR/J) in a stressful situation was studied. As a model of stressful situation, the open field test was used. A statistically significant influence of genotype on the variability of the behaviour characteristics is found. On the basis of analysis of general combining ability of the strains, a hypothesis is made that in the gene pool of BALB/c and C3H/He strains there are concentrated some genes of additive effect, which increase the strength of emotional reactions of mice in a stressful situation, while in the gene pool of C57BL/6 and AKR/J there are genes of opposite effect. An analysis of the specific combining ability demonstrates that an important role in the control of features characterizing the exploratory activity of mice is played by non-additive gene effects, in particular, the effects of over-dominance. Significant genotypic correlations between the rate of sexual maturation of female mice and their behaviour in stressful situation were observed. The mice which mature earlier are more reactive to the stressing effect of a strange environment.

Animals↗

[Genetic analysis of the rate of sexual maturation in female mice].

In studies of the female progeny of complete diallel crossing of BALB/c, C3H/He, C57BL/6, AKR/J mice a considerable influence of the genotype on the variability for such characters as the age of the vagina opening and the weight at that time, the age of the first oestrus and the weight at that time, the weight at 6 weeks was observed. The analysis of the effects of the general and specific combining ability demonstrated that non-additive gene effects play the major role in the determination of the day the begining oestral activity and the weight on this day. The age and the weight on the day of vaginal opening are inherited additively. It is demonstrated that the females of BALB/c and C3H/He (mammary tumour susceptible strains) are characterized by higher rate of sexual maturation than those of C57BL/6 and AKR/J in which the tumours of this localization are rare.

Age Factors↗

Genetic variance and breeding values for resistance to a wind-borne disease [Sphaerotheca macularis (Wallr. ex Fr.)] in strawberry (Fragaria x ananassa Duch.) estimated by exploring mixed and spatial models and pedigree information.

A mixed model approach was used to estimate variance components and heritabilities for resistance to powdery mildew, a wind-borne disease in strawberry. In order to improve precision in the statistical computations, spatial error control effects were included to account for systematic environmental variations in the large field trials. Pedigree information was included where feasible. Seedling families obtained from an incomplete 63-by-63 diallel cross were grown at six locations and scored subjectively for mildew attack three times during the growing season. The 63 parents included both European and American cultivars as well as advanced selections from various breeding programmes. A total of 298 full-sib families were realized, including 26 reciprocal families. No reciprocal differences were found. On a plot-mean basis, the broad-sense heritability was found to be intermediate, H(2) = 0.44-0.50, depending on whether the pedigree information was included in the model or not. The increase was mainly due to a substantial increase in the additive variance component. Likewise, the narrow-sense heritability increased from h(2) = 0.39 to h(2) = 0.45 when the pedigree information was included, while the ratio of the specific combining ability variance to the general combining ability variance fell from 13% to 10%. The predicted breeding values of the 63 parents demonstrate that important cultivars such as Elsanta and Korona are unlikely to produce progenies with a high degree of resistance. On the other hand, the Norwegian cultivar Solprins, the Canadian cultivar Kent and the Italian cultivar Patty appeared to give highly resistant progeny. At the full-sib level, the estimated disease scores ranged from 1.15 (Kent x Induka) to 4.19 (Cavendish x Avanta), revealing a huge range of variation for powdery mildew resistance available for selection.

Analysis of Variance↗

Sperm head morphology and nuclear chromatin structure evaluated by flow cytometry in a diallel cross in mice.

Genetic factors affecting spermatogenesis, sperm morphology, and chromatin structure in mice were estimated using a diallel cross of the inbred lines C3H/HeJ, C57BL/6J, DBA/2J, and BALB/cByJ. Flow cytometry of acridine orange stained cells was used to evaluate proportions of testicular tetraploid, diploid, and haploid cells and nuclear chromatin structure of sperm, measured by resistance of chromatin to in situ acid denaturation, and quantified by the ratio of double- to single-stranded DNA (alpha t). Percent morphologically abnormal sperm was scored by light microscopy. Heterosis, line, maternal, and reciprocal effects, and general and specific combining abilities were estimated for body and testis weights, testicular cell proportions, sperm alpha t values, and percent abnormal sperm. Heterosis was important for testis weight, alpha t values, and percent abnormal sperm. Inbreds varied in body and testicular weights, alpha t values, and percent abnormal sperm. Significant maternal effects were noted for several traits but could be due to sex-linked (X or Y) factors, since maternal and sex-linked effects were confounded. Although a high positive correlation existed between alpha t values and percent abnormal sperm, the proportion of sperm with altered chromatin structure, measured by FCM, was generally much lower than proportion of morphologically abnormal cells.

Animals↗

The evolution of plant reproductive characters; sexual versus natural selection.

The rôle of sexual selection in the evolution of plant reproductive characters has become a widely discussed topic among plant population biologists. For many reproductive characters, it is difficult to distinguish whether sexual selection or natural selection has been the more important force. We propose a definition of sexual selection for cosexual species and critically review the topic of sexual selection in plants. The emphasis of the chapter is on the evolution of plant reproductive characters, rather than on the issue of whether certain phenomena should be classified as sexual or natural selection. We do, however, argue that the category of sexual selection should not include the phenomena of inbreeding depression, genetically based self-incompatibility systems controlled by one or a few loci, or the effects of wide crossing and specific combining ability. We then discuss the available information on pollen competition and progeny quality, fruit and seed abortion, and the rôle of pollinator attraction in male and female fertility.

Biological Evolution↗

The genetic properties of homosexual copulation behavior in Tribolium castaneum: diallel analysis.

The rate of homosexual copulation has been defined as the ratio between the number of homosexual mountings and the total number of mountings (homo and heterosexual) performed by a Tribolium castaneum male during a period of 30 min. In a laboratory population, the average rate when a number of males (m) and females (k x m) are tested together has been estimated in each of the six situations defined by m = 2 and 10 and k = 0.5, 1, and 2, k being the sex ratio among scored individuals. Good agreement was found between the observed rates of homosexual copulation and those expected assuming random contacts between pairs of individuals totally indiscriminate with respect to sex. The genetic properties of the trait have been investigated by means of a diallel analysis of six highly inbred lines derived from the same population and their F1 crosses. Significant general and specific combining ability effects were detected. When noninbred females were used for testing, the rate of homosexual copulation is expected to be higher for inbred than for noninbred males. This prediction, implying the existence of inbreeding depression for the trait, also was confirmed by the data.

Alleles↗

Preliminary studies on combiners and combinations for quality traits in tomato (Lycopersicon esculentum Mill.).

Line x Tester analysis of 2 testers and 10 lines was conducted for fruit quality characters. Though both general (gca) and specific combining ability (sca) variances contributed significantly for these traits, the contribution of sca variance was more prominent for titratable acidity, total soluble solids and ascorbic acid content, while for pericarp thickness gca variance was more important. The highest gca effects for pericarp thickness, total soluble solids, ascorbic acid content and titratable acidity were recorded by the lines SM, Sioux, TT and SW 72, respectively. Based on pooled gca score, SW 72 was recognised as a good combiner for quality traits. The magnitude and significance of sca effects varied with the characters. Two superior crosses were identified and the implication of combining ability effects on handling these crosses are discussed.

Analysis of Variance↗

Retrospective selection of elite parent trees using paternity testing with microsatellite markers: an alternative short term breeding tactic for Eucalyptus.

The conventional way to drive modifications in old forest tree seed orchards is to establish progeny trials involving each parent tree and then evaluate its contribution to the performance of the progeny by estimating its general and specific combining ability (GCA and SCA). In this work, we successfully applied an alternative parent selection tactic based on paternity testing of superior offspring derived from a hybrid seed orchard established with a single Eucalyptus grandis seed parents and six E. urophylla pollen parents. A battery of 14 microsatellite markers was used to carry out parentage tests of 256 progeny individuals including two independent samples of selected trees and one control unselected sample, all derived from 6-year-old forest stands in eastern Brazil. Paternity determination was carried out for all progeny individuals by a sequential paternity exclusion procedure. Exclusion was declared only when the obligatory paternal allele in the progeny tree was not present in the alleged parent tree for at least four independent markers to avoid false exclusions due to mutation or null alleles. After maternity checks to identify seed mixtures and selfed individuals, the paternity tests revealed that approximately 29% of the offspring was sired by pollen parents outside the orchard. No selfed progeny were found in the selected samples. Three pollen parents were found to have sired essentially all of the offspring in the samples of selected and non-selected progeny individuals. One of these three parents sired significantly more selected progeny than unselected ones ( P< or =0.0002 in a Fisher exact test). Based on these results, low-reproductive-successful parents were culled from the orchard, and management procedures were adopted to minimize external pollen contamination. A significant difference ( P<0.01) in mean annual increment was observed between forest stands produced with seed from the orchard before and after selection of parents and revitalization of the orchard. An average realized gain of 24.3% in volume growth was obtained from the selection of parents as measured in forest stands at age 2-4 years. The marker-assisted tree-breeding tactic presented herein efficiently identified top parents in a seed orchard and resulted in an improved seed variety. It should be applicable for rapidly improving the output quality of seed orchards, especially when an emergency demand for improved seed is faced by the breeder.

Brazil↗

Prediction of single-cross hybrid performance for grain yield and grain dry matter content in maize using AFLP markers associated with QTL.

Prediction methods to identify single-cross hybrids with superior yield performance have the potential to greatly improve the efficiency of commercial maize (Zea mays L.) hybrid breeding programs. Our objectives were to (1) identify marker loci associated with quantitative trait loci for hybrid performance or specific combining ability (SCA) in maize, (2) compare hybrid performance prediction by genotypic value estimates with that based on general combining ability (GCA) estimates, and (3) investigate a newly proposed combination of the GCA model with SCA predictions from genotypic value estimates. A total of 270 hybrids was evaluated for grain yield and grain dry matter content in four Dent x Flint factorial mating experiments, their parental inbred lines were genotyped with 20 AFLP primer-enzyme combinations. Markers associated significantly with hybrid performance and SCA were identified, genotypic values and SCA effects were estimated, and four hybrid performance prediction approaches were evaluated. For grain yield, between 38 and 98 significant markers were identified for hybrid performance and between zero and five for SCA. Estimates of prediction efficiency (R (2)) ranged from 0.46 to 0.86 for grain yield and from 0.59 to 0.96 for grain dry matter content. Models enhancing the GCA approach with SCA estimates resulted in the highest prediction efficiency if the SCA to GCA ratio was high. We conclude that it is advantageous for prediction of single-cross hybrids to enhance a GCA-based model with SCA effects estimated from molecular marker data, if SCA variances are of similar or larger importance as GCA variances.

Biomass↗

Quantitative genetic variation of leaf size and shape in a mixed diploid and triploid population of Populus.

In the interspecific cross of Populus trichocarpa x P. deltoides, unexpected simultaneous occurrence of diploid hybrids and triploid hybrids (with two alleles from the female parent and one from the male parent at each locus) led us to examine the evolutionary genetic significance of this phenomenon. As expected, leaf size and shape of the triploid progeny are closer to the female P. trichocarpa than male P. deltoides parent. Although the pure triploid progeny population did not have higher genetic variance in leaf traits than the pure diploid population, the former appears to hide much non-additive genetic variance and display strong genetic control over the phenotypic plasticity of leaf traits. It is suggested that the cryptic non-additive variance, especially epistasis, can be released when a population is disturbed by changes in the environment. A mixed diploid and triploid progeny population combines phenotypic and genetic characteristics of both pure hybrids and is considered to be of adaptive significance for populars to survive and evolve in a fluctuating environment. The significant effect due to general and specific combining ability differences at the population level suggests that the population divergence of these two species is under additive and non-additive genetic control.

Diploidy↗

Diallel designs, analyses, and reference populations.

Some issues which evidently remain as areas of contention in diallel analysis are reviewed. In the estimation of genetic variance components for an ancestral reference population in equilibrium, analysis should be applied to F1 data only, and proceed as for a random effects model. No meaningful reference population is constituted by the parental sample itself, but an equilibrium reference population which could be derived from these parents can be defined. To give unbiassed estimates of parameters for this population, analysis must include S1 data, and the parents must be homozygous and in linkage equilibrium. Estimation of dominance variance must allow for the fact that the diallel population itself is not in linkage equilibrium by correcting the specific combining ability sum of squares for the mean S1 vs. F1 difference. Some different analyses of variance of the diallel table are discussed in the context of the above reference populations.

Alleles↗

Chromosomal regions involved in hybrid performance and heterosis: their AFLP(R)-based identification and practical use in prediction models.

In this paper, a novel approach towards the prediction of hybrid performance and heterosis is presented. Here, we describe an approach based on: (i) the assessment of associations between AFLP(R) markers and hybrid performance and specific combining ability (SCA) across a set of hybrids; and (ii) the assumption that the joint effect of genetic factors (loci) determined this way can be obtained by addition. Estimated gene effects for grain yield varied from additive, partial dominance to overdominance. This procedure was applied to 53 interheterotic hybrids out of a 13 by 13 half-diallel among maize inbreds, evaluated for grain yield. The hybrid value, representing the joint effect of the genetic factors, accounted for up to 62.4% of the variation in the hybrid performance observed, whereas the corresponding efficiency of the SCA model was 36.8%. Efficiency of the prediction for hybrid performance was evaluated by means of a cross-validation procedure for grain yield of (i) the 53 interheterotic hybrids and (ii) 16 hybrids partly related to the 13 by 13 half-diallel. Comparisons in prediction efficiency with the 'distance' model were made. Because the map position of the selected markers is known, putative quantitative trait loci (QTL) affecting grain yield, in terms of hybrid performance or heterosis, are identified. Some QTL of grain yield detected in the present study were located in the vicinity of loci reported earlier as having quantitative effects on grain yield.

Alleles↗

Crossbreeding effects for body weight and carcase traits in Pekin duck.

1. Three sire lines of Pekin duck, three dam lines and 9 crosses between these two groups were tested in replicated tests from 1987 to 1991. Body weight at the age of 7 weeks (n = 5189), carcase percentage, percentage of abdominal fat and thickness of breast muscles were recorded (n = 1432 for carcase traits). 2. The data were analysed by linear models. All models contained the factors test and sex. When analysing only crosses, general and specific combining abilities (GCA and SCA respectively) were included as well as their interactions with the test. Using the complete data set (lines and crosses), direct genetic and heterotic effects were considered. 3. The factors test and sex were significant in both data sets for all traits. 4. For body weight, all genetic factors were significant. The average heterosis was 65 g +/- 9 g (2.2%); the highest observed heterosis was 7.7%. 5. For carcase percentage, the heterosis was always negative (up to -2.1%), whereas in abdominal fat, a desirable negative heterosis was observed only in one cross. No significant heterotic or combining ability effects were observed in the thickness of breast muscles. 6. Significant interactions between at least one genetic factor and test were found in all traits. 7. The relative importance of GCA and SCA, possible sources of confounding estimates of genetic effects, the importance of heterotic effects and genotype x environment interactions are discussed.

Animals↗

Estimation of the dominance variance for postweaning gain in the U.S. Limousin population.

The objective of this study was to estimate the dominance variance for postweaning gain in Limousin cattle. Data included 215,326 records of postweaning gain from 205 to 365 d, provided by the North American Limousin Foundation. Parental dominance subclasses were formed and related using the method of Hoeschele and VanRaden. Variance components were estimated using Method R based on six samples of 50%. Fixed effects in the model included contemporary group and covariates for inbreeding and breed composition (percentage Limousin). Heterozygosity was negatively correlated with breed composition (< -.99) and was therefore not included in the model. Two types of contemporary groups used as original groups from the National Cattle Evaluation were partially based on breed composition. Original contemporary groups that were too homogeneous for breed composition were replaced by herd-year-sex classes. Two models were used with the two data sets. Model 1 contained the fixed effects described above and an additive genetic effect. Model 2 included a dominance effect in addition to the effects contained in Model 1. In total, four combinations of contemporary group x model were used. Dominance variance was computed as being four times the estimated parental subclass variance. Estimates for inbreeding depression and breed composition (percentage Limousin) were all small and not greatly affected by inclusion of dominance effects or changes in contemporary groups. Estimates of the additive variance (expressed as percentage of the phenotypic variance) were only slightly affected, with values between 20 and 21%. Dominance estimates were highly affected when passing from original (10%) and to alternative contemporary groups (18%). Such large values may indicate that dominance is important for postweaning gain. Results showed the advantage of an individual dominance approach based on sire-dam combinations; therefore, expected gains through the use of specific combination ability as a part of the mating selection criteria for growth might be high.

Animals↗

Reproductive rates, birth weight, calving ease and 24-h calf survival in a four-breed diallel among Simmental, Limousin, Polled Hereford and Brahman beef cattle.

Calving and weaning rates, birth weight, calving ease, and 24-h calf survival were evaluated in a four-breed diallel of Simmental (S), Limousin (L), Polled Hereford (H) and Brahman (B) beef cattle in five calf crops. Limousin dams tended to have the highest calving and weaning rates because they were able to have heavier calves with less calving difficulty and higher survival rates. Brahman-sired calves were the heaviest at birth (P less than .05) and B dams produced the lightest calves (P less than .001). Lower birth weights tended to be the limiting factor on survival of these calves. A linear comparison among means to evaluate purebred, additive, maternal and specific combining ability effects showed most of the reduction in birth weight from B dams was due to maternal effects. Breed of dam accounted for a higher proportion of variation in calving ease than did sire breed. Simmental sires had significantly heavier calves at birth and S and H dams tended to have more calving difficulty and lower survival rates. Heterosis for these traits was generally not significant. Correlations were generally positive and significant for birth weight and calving ease, but were more variable for birth weight and survival. Linear regressions of calving ease on birth weight both within years and within dam-breed-year subclasses were very similar in that the association of these two traits was reduced as dam age increased.

Animals↗