Spatiotemporal analysis of the contraction of a fragment of the unfolded frog atrium.
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Motion detection and adaptation in crayfish photoreceptors. A spatiotemporal analysis of linear movement sensitivity.
Impulse and sine wave responses of crayfish photoreceptors were examined to establish the limits and the parameters of linear behavior. These receptors exhibit simple low pass behavior which is well described by the transfer function of a linear resistor-capacitor cascade of three to five stages, each with the same time constant (tau). Additionally, variations in mean light intensity modify tau twofold and the contrast sensitivity by fourfold. The angular sensitivity profile is Gaussian and the acceptance angle (phi) increases 3.2-fold with dark adaptation. The responses to moving stripes of positive and negative contrast were measured over a 100-fold velocity range. The amplitude, phase, and waveform of these responses were predicted from the convolution of the receptor's impulse response and angular sensitivity profile. A theoretical calculation based on the convolution of a linear impulse response and a Gaussian sensitivity profile indicates that the sensitivity to variations in stimulus velocity is determined by the ratio phi/tau. These two parameters are sufficient to predict the velocity of the half-maximal response over a wide range of ambient illumination levels. Because phi and tau vary in parallel during light adaptation, it is inferred that many arthropods can maintain approximately constant velocity sensitivity during large shifts in mean illumination and receptor time constant. The results are discussed relative to other arthropod and vertebrate receptors and the strategies that have evolved for movement detection in varying ambient illumination.
Adaptation, Ocular↗
Spatiotemporal analysis of epizootic raccoon rabies propagation in Connecticut, 1991-1995.
The quantitative analysis of pathogen transmission within its specific spatial context should improve our ability to predict and control the epizootic spread of that disease. We compared two methods for calibrating the effect of local, spatially distributed environmental heterogeneities on disease spread. Using the time-of-first-appearance of raccoon rabies across the 169 townships in Connecticut, we estimated local spatial variation in township-to-township transmission rate using Trend Surface Analysis (TSA) and then compared these estimates with those based on an earlier probabilistic simulation using the same data. Both the probabilistic simulation and the TSA reveal significant reduction in transmission when local spatial domains are separated by rivers. The probabilistic simulation suggested that township-to-township transmission was reduced sevenfold for townships separated by a river. The global effect of this sevenfold reduction is to increase the time-to-first-appearance in the eastern townships of Connecticut by approximately 29.7% (spread was from west to east). TSA revealed a similar effect of rivers with an overall reduction in rate of local propagation due to rivers of approximately 22%. The 7.7% difference in these two estimates reveals slightly different aspects of the spatial dynamics of this epizootic. Together, these two methods can be used to construct an overall picture of the combined effects of local spatial variation in township-to-township transmission on patterns of local rate of propagation at scales larger than the immediate nearest neighboring townships.
Animals↗
A magnetoencephalography spatiotemporal analysis of neural activities during feature binding.
Previous literature shows that feature binding processes elicit fronto-hippocampal areas. The time course of this process, however, remains unknown. This is the first study that investigates feature binding using magnetoencephalography. Synthetic aperture magnetometry analysis was used to localize sources of increased power in the theta band during the encoding phases of a feature-binding task in the left and right medial frontal gyri (Brodmann's area 10) and left and right anterior cingulate gyri. Theta band synchronization was observed in many of these same areas, but also in other areas not noted to have increased theta band power suggesting a broad network of regions subserving the encoding phase of feature binding.
Adult↗
LV volume quantification via spatiotemporal analysis of real-time 3-D echocardiography.
This paper presents a method of four-dimensional (4-D) (3-D + Time) space-frequency analysis for directional denoising and enhancement of real-time three-dimensional (RT3D) ultrasound and quantitative measures in diagnostic cardiac ultrasound. Expansion of echocardiographic volumes is performed with complex exponential wavelet-like basis functions called brushlets. These functions offer good localization in time and frequency and decompose a signal into distinct patterns of oriented harmonics, which are invariant to intensity and contrast range. Deformable-model segmentation is carried out on denoised data after thresholding of transform coefficients. This process attenuates speckle noise while preserving cardiac structure location. The superiority of 4-D over 3-D analysis for decorrelating additive white noise and multiplicative speckle noise on a 4-D phantom volume expanding in time is demonstrated. Quantitative validation, computed for contours and volumes, is performed on in vitro balloon phantoms. Clinical applications of this spaciotemporal analysis tool are reported for six patient cases providing measures of left ventricular volumes and ejection fraction.
Cardiac Volume↗
Perils of proximity: a spatiotemporal analysis of moral distress and moral ambiguity.
The physical nearness, or proximity, inherent in the nurse-patient relationship has been central in the discipline as definitive of the nature of nursing and its moral ideals. Clearly, this nearness is in service to those in need of care. This proximity, however, is not unproblematic because it contributes to two of the most prolonged difficulties, both for individual nurses and the discipline of nursing--moral distress and moral ambiguity. In this paper we explore proximity using both a moral and geographical lens and offer some insights regarding this practice reality. We examine the effect of proximity to patients on nurses' moral responsiveness, particularly as it affects nurses' moral distress. Proximity is paradoxical in this regard because, while it propels nurses to act, it can also propel nurses to ignore or abandon. Likewise, we argue that nursing's tendency to define itself in relation to the closeness of the nurse-patient relationship leads to problems of moral ambiguity. Our recommendations include moving others closer to the bedside and thus to the work of nursing in the literal and theoretical sense.
Adaptation, Psychological↗
Spatiotemporal analysis of calcium dynamics in the nucleus of hamster oocytes.
1. Subcellular Ca2+ dynamics inside and around the nucleus of immature hamster oocytes were analysed with confocal Ca2+ imaging. 2. The ratio value between emission intensity of two injected fluorescent Ca2+ indicators, Calcium Green and Fura Red, was almost uniform over the entire oocyte, suggesting that nucleoplasmic Ca2+ concentration ([Ca2+]n) is comparable to cytoplasmic Ca2+ concentration ([Ca2+]c) at the resting state. 3. When Ca2+ was iontophoretically injected into the nucleoplasm or the perinuclear cytoplasm, it diffused across the nuclear envelope (NE), and perinuclear [Ca2+]c and [Ca2+]n reached the same level within 2 s, although the NE worked as a weak but detectable barrier for Ca2+ diffusion. 4. Inositol 1,4,5-trisphosphate (IP3)-induced Ca2+ release from the NE through the inner membrane was not detected, even when a large amount of IP3 was delivered in close proximity to the inner nuclear membrane. 5. When an oocyte was uniformly stimulated by photolysis of caged IP3, a Ca2+ rise was initiated in the perinuclear cytoplasm. The [Ca2+]n rise was always delayed with respect to, but rapidly equilibrated with, the [Ca2+]c rise. 6. Clusters of the endoplasmic reticulum were located in the perinuclear cytoplasm and served as the trigger zone of IP3-induced Ca2+ release. 7. The results indicate that the [Ca2+]n rise occurs as the consequence of the influx of Ca2+ which was released in the perinuclear cytoplasm, not Ca2+ release from NE to the nucleoplasm.
Animals↗
Measurement of fibrous cap thickness in atherosclerotic plaques by spatiotemporal analysis of laser speckle images.
Necrotic-core fibroatheromas (NCFA) with thin, mechanically weak fibrous caps overlying lipid cores comprise the majority of plaques that rupture and cause acute myocardial infarction. Laser speckle imaging (LSI) has been recently demonstrated to enable atherosclerotic plaque characterization with high accuracy. We investigate spatio-temporal analysis of LSI data, in conjunction with diffusion theory and Monte Carlo modeling of light transport, to estimate fibrous cap thickness in NCFAs. Time-varying laser speckle images of 20 NCFAs are selected for analysis. Spatio-temporal intensity fluctuations are analyzed by exponential fitting of the windowed normalized cross-correlation of sequential laser speckle patterns to obtain the speckle decorrelation time constant, tau(rho), as a function of distance rho from the source entry location. The distance, rho', at which tau(rho) dropped to 65% of its maximum value is recorded. Diffusion theory and Monte Carlo models are utilized to estimate the maximum photon penetration depth, zmax(rho'), for a distance equal to rho', measured from LSI. Measurements of zmax(rho') correlate well with histological measurements of fibrous cap thickness (R=0.78, p<0.0001), and paired t-tests show no significant difference between the groups (p=0.4). These results demonstrate that spatio-temporal LSI may allow the estimation of fibrous cap thickness in NCFAs, which is an important predictor of plaque stability.
Algorithms↗
Spatiotemporal analysis of acid adaptation-mediated Vibrio cholerae hyperinfectivity.
Acid adaptation has previously been shown to increase the infectivity of Vibrio cholerae in the infant mouse model. To better understand this phenomenon, we monitored the spatial distribution and temporal changes in the ratios of acid-adapted cells to unadapted V. cholerae cells in the small intestine, as well as the timing of virulence factor expression. We found that the competitive advantage afforded by acid adaptation does not become manifest until greater than 3 h postinfection; thus, acid adaptation does not increase V. cholerae passage through the gastric acid barrier. Additionally, acid-adapted and unadapted V. cholerae cells colonize the same sections of the small intestine and show similar kinetics of transcriptional induction of the virulence genes tcpA and ctxA. These studies suggest that the increased infectivity of acid-adapted V. cholerae is due to a more rapid onset of multiplication and/or to an increased multiplication rate within the infant mouse intestine.
Adaptation, Physiological↗
Spatiotemporal analysis of exocytosis in mouse parotid acinar cells.
Exocrine cells of the digestive system are specialized to secrete protein and fluid in response to neuronal and/or hormonal input. Although morphologically similar, parotid and pancreatic acinar cells exhibit important functional divergence in Ca(2+) signaling properties. To address whether there are fundamental differences in exocytotic release of digestive enzyme from exocrine cells of salivary gland versus pancreas, we applied electrophysiological and optical methods to investigate spatial and temporal characteristics of zymogen-containing secretory granule fusion at the single-acinar cell level by direct or agonist-induced Ca(2+) and cAMP elevation. Temporally resolved membrane capacitance measurements revealed that two apparent phases of exocytosis were induced by Ca(2+) elevation: a rapidly activated initial phase that could not be resolved as individual fusion events and a second phase that was activated after a delay, increased in a staircaselike fashion, was augmented by cAMP elevation, and likely reflected both sequential compound and multivesicular fusion of zymogen-containing granules. Optical measurements of exocytosis with time-differential imaging analysis revealed that zymogen granule fusion was induced after a minimum delay of approximately 200 ms, occurred initially at apical and basolateral borders of acinar cells, and under strong stimulation proceeded from apical pole to deeper regions of the cell interior. Zymogen granule fusions appeared to coordinate subsequent fusions and produced persistent structures that generally lasted several minutes. In addition, parotid gland slices were used to assess secretory dynamics in a more physiological context. Parotid acinar cells were shown to exhibit both similar and divergent properties compared with the better-studied pancreatic acinar cell regarding spatial organization and kinetics of exocytotic fusion of zymogen granules.
Animals↗
AIDS deaths in the Bronx 1983-1988: spatiotemporal analysis from a sociogeographic perspective.
"Patterns of AIDS deaths, in space and time, are examined for the populous Bronx section of New York City in view of the continuing massive destruction of housing and disruption of community which has affected the South Bronx since the early 1970s. Annual Bronx AIDS deaths are studied simultaneously in geographic space and in a dual 'social variate' space, and it is found that study of linked changes in each deeply illuminates patterns in both. This analysis reinforces a rapidly growing body of work which suggests control of AIDS in the United States, particularly prevention of a widespread and relentlessly rising heterosexual phase of the epidemic, may well prove impossible without a timely, general, and considerable program of reform and renewal for its disintegrating inner cities."
Acquired Immunodeficiency Syndrome↗
Spatiotemporal analysis of neuromagnetic activation associated with mirror reading.
Our previous report has confirmed that visually presented words can elicit neuromagnetic activities from the visual cortex, angular gyrus and Broca's area. It is not clear how the words are visuospatially transformed and recognized by the human brain. Mirror reading is characterized by reading which runs in the opposite direction to normal reading, with reversals of letters. It would be very interesting to find out if there are any neuromagnetic differences between the mirror reading and normal reading. Four right-handed healthy adults have been studied with a whole cortex Magnetoencephalography (MEG) system. The stimuli consisted of eight normal oriented words and eight inverted exclamation mark section "reversed words" (mirror-image of the words). All stimuli were randomly presented on the screen in front of the subjects using DirectX. MEG data were analyzed using both single dipole modeling and synthetic aperture magnetometry (SAM). Four responses to the reversed words were identified in all four subjects. In comparison to the normally oriented words, the reversed words elicited a stronger response at a latency of 248+/-6 ms. SAM results indicated that the reversed words invoked strong activations in the left and right parietal cortices but the normally oriented words did not. The mirror reading elicited one magnetic response which is different from that of the normal reading. The difference between the mirror reading and the normal reading in terms of neuromagnetic activation may reflect the development of novel representations for reversed words.
Adult↗
Spatiotemporal wavelet analysis for functional MRI.
Characterizing the spatiotemporal behavior of the BOLD signal in functional Magnetic Resonance Imaging (fMRI) is a central issue in understanding brain function. While the nature of functional activation clusters is fundamentally heterogeneous, many current analysis approaches use spatially invariant models that can degrade anatomic boundaries and distort the underlying spatiotemporal signal. Furthermore, few analysis approaches use true spatiotemporal continuity in their statistical formulations. To address these issues, we present a novel spatiotemporal wavelet procedure that uses a stimulus-convolved hemodynamic signal plus correlated noise model. The wavelet fits, computed by spatially constrained maximum-likelihood estimation, provide efficient multiscale representations of heterogeneous brain structures and give well-identified, parsimonious spatial activation estimates that are modulated by the temporal fMRI dynamics. In a study of both simulated data and actual fMRI memory task experiments, our new method gave lower mean-squared error and seemed to result in more localized fMRI activation maps compared to models using standard wavelet or smoothing techniques. Our spatiotemporal wavelet framework suggests a useful tool for the analysis of fMRI studies.
Algorithms↗
Spatiotemporal Bayesian analysis of Lyme disease in New York state, 1990-2000.
Mapping ordinarily increases our understanding of nontrivial spatial and temporal heterogeneities in disease rates. However, the large number of parameters required by the corresponding statistical models often complicates detailed analysis. This study investigates the feasibility of a fully Bayesian hierarchical regression approach to the problem and identifies how it outperforms two more popular methods: crude rate estimates (CRE) and empirical Bayes standardization (EBS). In particular, we apply a fully Bayesian approach to the spatiotemporal analysis of Lyme disease incidence in New York state for the period 1990-2000. These results are compared with those obtained by CRE and EBS in Chen et al. (2005). We show that the fully Bayesian regression model not only gives more reliable estimates of disease rates than the other two approaches but also allows for tractable models that can accommodate more numerous sources of variation and unknown parameters.
Bayes Theorem↗
Automatic extraction and measurement of leukocyte motion in microvessels using spatiotemporal image analysis.
This paper describes a computer vision system for the automatic extraction and velocity measurement of moving leukocytes that adhere to microvessel walls from a sequence of images. The motion of these leukocytes can be visualized as motion along the wall contours. We use the constraint that the leukocytes move along the vessel wall contours to generate a spatiotemporal image, and the leukocyte motion is then extracted using the methods of spatiotemporal image analysis. The generated spatiotemporal image is processed by a special-purpose orientation-selective filter and a subsequent grouping process newly developed for this application. The orientation-selective filter is designed by considering the particular properties of the spatiotemporal image in this application in order to enhance only the traces of leukocytes. In the subsequent grouping process, leukocyte trace segments are selected and grouped among all the segments obtained by simple thresholding and skeletonizing operations. We show experimentally that the proposed method can stably extract leukocyte motion.
Algorithms↗
A pattern grouping algorithm for analysis of spatiotemporal patterns in neuronal spike trains. 2. Application to simultaneous single unit recordings.
This study demonstrates the practical application of the pattern grouping algorithm (PGA), presented in the companion paper (Tetko IV, Villa AEP. A pattern grouping algorithm for analysis of spatiotemporal patterns in neuronal spike trains. 1. Detection of repeated patterns. J. Neurosci. Methods 2000; accompanying article), to data sets including up to 30 simultaneously recorded spike trains. The analysis of a large network of simulated neurons shows that the incidence of patterns cannot be simply related to an increase in firing rates obtained after Hebbian learning. Patterns that disappeared and reappeared in the thalamus of anesthetized rats when the cerebral cortex was reversibly inactivated suggest that widespread cell assemblies contribute to the generation and propagation of precisely timed activity. In an another experiment multiple spike trains were recorded from the temporal cortex of freely moving rats performing a complex two-choice discrimination task. The presence or absence of particular patterns in the period preceding the cue was associated with changes in reaction time. In conclusion, neuronal network interactions may generate spatiotemporal firing patterns detectable by PGA. We provide evidence of such patterned activity associated with specific animal's behavior, thus suggesting the existence of complex temporal coding schemes in the higher nervous centers of the brain.
Action Potentials↗
Spatiotemporal transcriptomic analysis during cold ischemic injury to the murine kidney reveals compartment-specific changes.
BACKGROUND: Kidney transplantation is the preferred treatment strategy for end-stage kidney disease. Deceased donor kidneys usually undergo cold storage until kidney transplantation, leading to cold ischemia injury that may contribute to poor graft outcomes. However, the molecular characterization of potential mechanisms of cold ischemia injury remains incomplete. RESULTS: To bridge this knowledge gap, we leverage 10x Visium spatial transcriptomic technology to perform full transcriptome profiling of murine kidneys subject to varying durations of cold ischemia typical in a deceased donor kidney transplant setting. We develop a computational workflow to identify and compare spatiotemporal transcriptomic changes that accompany the injury pathophysiology in a tissue compartment-specific manner. We identify proportional enrichment of oxidative phosphorylation (OXPHOS) genes with increasing duration of cold ischemia injury within the oxygen-lean inner medulla region, suggestive of atypical metabolic presentation. This is distinct in cold ischemia injury tissue compared to warm ischemia-reperfusion kidney injury tissue. Spatiotemporal trends are validated by qPCR and immunofluorescence in a larger cohort of mice. CONCLUSIONS: Altogether, our spatiotemporal transcriptomic analysis identifies coordinated molecular changes within metabolic pathways such as OXPHOS deep within the cold ischemic kidney, highlighting the need for increased attention to the inner medulla and potential opportunities for new insights beyond those available from superficial biopsy-focused tissue examination.
Animals↗
A pattern grouping algorithm for analysis of spatiotemporal patterns in neuronal spike trains. 1. Detection of repeated patterns.
The existence of precise temporal relations in sequences of spike intervals, referred to as 'spatiotemporal patterns', is suggested by brain theories that emphasize the role of temporal coding. Specific analytical methods able to assess the significance of such patterned activity are extremely important to establish its function for information processing in the brain. This study proposes a new method called 'pattern grouping algorithm' (PGA), designed to identify and evaluate the statistical significance of patterns which differ from each other by a defined and small jitter in spike timing of the order of few ms. The algorithm performs a pre-selection of template patterns with a fast computational approach, optimizes the jitter for each spike in the template and evaluates the statistical significance of the pattern group using three complementary statistical approaches. Simulated data sets characterized by various types of known non stationarities are used for validation of PGA and for comparison of its performance to other methods. Applications of PGA to experimental data sets of simultaneously recorded spike trains are described in a companion paper (Tetko IV, Villa AEP. A pattern grouping algorithm for analysis of spatiotemporal patterns in neuronal spike trains. 2. Application to simultaneous single unit recordings. J Neurosci Method 2000; accompanying article).
Action Potentials↗