The Novel HLA-DPB1*1790:01 Allele, Identified by Sanger Dideoxy Nucleotide Sequencing in a Chinese Individual.
HLA-DPB1*1790:01 differs from HLA-DPB1*02:02:01:01 by a single non-synonymous nucleotide change in exon 2.
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HLA-DPB1*1790:01 differs from HLA-DPB1*02:02:01:01 by a single non-synonymous nucleotide change in exon 2.
HLA-DPB1*1730:01 differs from HLA-DPB1*107:01:01:01 by a single non-synonymous nucleotide change in exon 4.
HLA-C*08:294 allele differs from HLA-C*08:01:01:01 by a single non-synonymous nucleotide change in exon 3.
HLA-DQB1*06:528 differs from HLA-DQB1*06:09:01:01 by a single non-synonymous nucleotide change in exon 2.
HLA-B*13:187 differs from HLA-B*13:01:01:01 by a single non-synonymous nucleotide change in exon 3.
HLA-A*33:284 differs from HLA-A*33:03:01:01 by a single non-synonymous nucleotide change in exon 4.
HLA-B*35:433 was fully characterised using sequence-based typing after haplo-specific amplification.
HLA-A*24:668 differs from HLA-A*24:02:01:01 by a single non-synonymous nucleotide change in exon 2.
HLA-A*02:1259 differs from HLA-A*02:07:01:01 by two non-synonymous nucleotide changes in exon 3.
HLA-C*07:640:02 differs from HLA-C*07:640:01 by a single non-synonymous nucleotide change in exon 3.
The HLA-B*46:106 allele differs from HLA-B*46:01:01:01 by one nucleotide substitution in codon 66 in exon 2.
The HLA-C*03:712 allele differs from HLA-C*03:03:01:01 by one nucleotide substitution in codon 61 in exon 2.
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The human Major Histocompatibility Complex (MHC) is located on the short arm of chromosome 6 (6p21.3) and spans about 4 Mb. According to different gene families the MHC is subdivided into a class I, class II and class III region and many of its gene products are associated with the immune system and the susceptibility to various diseases. To date, we have sequenced about 40% (400 kb) of the class II region between HLA-DP and HLA-DQ and a coordinated effort to sequence the entire MHC is well underway. Analysis of the sequence revealed several novel genes and provides new insights into the molecular organisation and evolution of the MHC. All our data are publicly available via the MHC database (MHCDB) which allows rapid access, retrieval and display in the context of other MHC associated data. MHCDB is online available at (http:(/)/www.hgmp.mrc.ac.uk/) and, together with all our sequences also via anonymous ftp (ftp.icnet.uk/icrf-public).
Chromosome 6 is probably best known for encoding the major histocompatibility complex (MHC) which is essential to the human immune response. In addition, it has been shown to be associated with many diseases such Schizophrenia, Diabetes, Arthritis, Haemochromatosis, Narcolepsy, Epilepsy, Retinitis Pigmentosa, Deafness, Ovarian Cancer, and many more. Chromosome 6 is about 180 Mb in size and is estimated to encode around 3500 genes of which only about 10% are currently known. It is our aim to map, sequence and annotate the entire chromosome in close collaboration with the chromosome 6 community.
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