Shaping of the sperm nucleus in Marsilea: a distinction between factors responsible for shape generation and shape determination.
Explore the source record for details and available documents.
Cell Nucleus↗
SEARCH · Search PubMed
Results for “SHAPE”
Search indexed PubMed citations on genomics, clinical trials, systematic reviews and public health. Explore titles, authors and supplied subject terms, then open the PubMed record.
Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.
Statistical sulcal shape comparisons: application to the detection of genetic encoding of the central sulcus shape.
Principal Component Analysis allows a quantitative description of shape variability with a restricted number of parameters (or modes) which can be used to quantify the difference between two shapes through the computation of a modal distance. A statistical test can then be applied to this set of measurements in order to detect a statistically significant difference between two groups. We have applied this methodology to highlight evidence of genetic encoding of the shape of neuroanatomical structures. To investigate genetic constraint, we studied if shapes were more similar within 10 pairs of monozygotic twins than within interpairs and compared the results with those obtained from 10 pairs of dizygotic twins. The statistical analysis was performed using a Mantel permutation test. We show, using simulations, that this statistical test applied on modal distances can detect a possible genetic encoding. When applied to real data, this study highlighted genetic constraints on the shape of the central sulcus. We found from 10 pairs of monozygotic twins that the intrapair modal distance of the central sulcus was significantly smaller than the interpair modal distance, for both the left central sulcus (Z = -2.66; P < 0.005) and the right central sulcus (Z = -2.26; P < 0.05). Genetic constraints on the definition of the central sulcus shape were confirmed by applying the same experiment to 10 pairs of normal young individuals (Z = -1.39; Z = -0.63, i.e., values not significant at the P < 0.05 level) and 10 pairs of dizygotic twins (Z = 0.47; Z = 0.03, i.e., values not significant at the P < 0.05 level).
Adult↗
Luminance-contrast properties of contour-shape processing revealed through the shape-frequency after-effect.
We investigated the first-order inputs to contour-shape mechanisms using the shape-frequency after-effect (SFAE), in which adaptation to a sinusoidally modulated contour causes a shift in the apparent shape-frequency of a test contour in a direction away from that of the adapting stimulus [Kingdom F. A. A., & Prins N. (2005a). Different mechanisms encode the shapes of contours and contour-textures. Journal of Vision 5(8), 463, (Abstract)]. We measured SFAEs for adapting and test contours (and edges) that differed in the contrast-polarity, scale (or blur) and magnitude of luminance contrast. The rationale was that if the SFAE was found to be reduced when adaptor and test differed along a particular dimension of luminance contrast, contour-shape mechanisms must be tuned to that dimension. Our results reveal that SFAEs manifest (i) a degree of selectivity to luminance contrast polarity for both even-symmetric (contours only) and odd-symmetric (both contours and edges) luminance profiles; (ii) a degree of selectivity to luminance scale (or blur); (iii) higher selectivity to fine compared to coarse scale for broadband edges (iv) a small preference for equal-in-contrast adaptors and tests. These results suggest that contour shapes are not encoded in the form of a sparse, cartoon-like sketch, as might be presumed by local energy (i.e. non-phase-selective) or form-cue invariant models, but instead in a form that is relatively 'feature-rich.'
Computer Graphics↗
Degrees of severe stenoses in sigma-shaped versus C-shaped right coronary arteries.
The right coronary artery (RCA) appears either C-shaped or sigma-shaped during standard angiography. The purpose of the present investigation was to assess whether C-shaped RCAs are associated with more atherosclerotic disease than sigma-shaped RCAs. The study sample comprised 120 consecutive patients who underwent coronary catheterization and multivariate analysis was conducted using several systemic risk factors for atherosclerosis. The proportion of sigma-shaped RCAs found in a group whose angiograms showed little or no obstruction (70%) was significantly higher than that found in the group with significant obstruction (33%, p <0.001). In conclusion, a C-shaped RCA is associated with atherosclerosis.
Adult↗
Controlled synthesis of high-quality PbS star-shaped dendrites, multipods, truncated nanocubes, and nanocubes and their shape evolution process.
Well-defined single-crystalline PbS nano- and microstructures including dendrites, multipods, truncated nanocubes, and nanocubes were synthesized in high yield by a simple solution route. Novel star-shaped PbS dendrites with six symmetric arms along the 100 direction, each of which shows one trunk (long axis) and four branches (short axes), have been achieved using Pb(AC)2 and thioacetamide (TAA) as precursors, under the molar ratio Pb(AC)2/TAA = 2/1, at initial reaction temperature 80 degrees C, refluxing for 30 min at 100 degrees C, in the presence of cetyltrimethylammonium bromine (CTAB). The "nanorods" in each branch are parallel to each other in the same plane and are perpendicular to the trunk. The truncated nanocubes mainly bounded by the {100} plane were prepared under a different Pb(AC)2/TAA molar ratio, at initial reaction temperature 40 degrees C, refluxing for 12 h at 100 degrees C. Based on the systematic studies on their shape evolution, a possible growth mechanism of these PbS nano- and microstructures was proposed. The shapes of PbS nanocrystals with face-centered cubic (fcc) structure are mainly determined by the ratio (R) between the growth rates along the (100) and (111) directions. The Pb(AC)2/TAA molar ratio and the initial reaction temperature influence the growth ratio R in the formation of PbS nuclei at an early stage, which results in the final morphology of PbS nanocrystals. Under the current experimental conditions, we can control the PbS shape evolution by simply tuning the molar ratio, the initial reaction temperature, and the period of reaction. Based on the systematic studies on the shape evolution, this approach is expected to be employed for the control-shaped synthesis of other fcc structural semiconductor nanomaterials. The photoluminescence properties were investigated and the prepared nano- and microstructures displayed a very strong luminescence around 600-650 nm at room temperature.
Journal Article↗
Spatial learning based on the shape of the environment is influenced by properties of the objects forming the shape.
In 3 experiments rats had to find a submerged platform that was located in a corner of a kite-shaped pool. The color of the walls creating this corner provided an additional cue for finding the platform in the shape + color condition but not the shape-only condition. During tests in a pool with walls of a uniform color but no platform, more time was spent in the corner where the platform was originally located after training in the shape + color than in the shape-only condition. The results challenge theories that assume either that learning about the shape of the environment takes place in a dedicated module or that cues compete for the control they acquire over behavior.
Animals↗
Discrimination of shape reflections and shape orientations by Columba livia.
By using a free-operant instrumental discrimination procedure, it was demonstrated that pigeons find two-dimensional mirror-image visual forms more difficult to distinguish than otherwise similar forms. Variations in orientation of the discriminanda exacerbated the relative confusability of mirror images. No significant difference was found in the pigeons' performance whether the birds were discriminating vertically or horizontally reflected mirror-image pairs. Mirror images of shapes were also shown to be less discriminable than upside-down versions of shapes. The similarity of mirror-image patterns is discussed in relation to the generalized recognition of bilaterally symmetrical forms by pigeons. Pigeons found an orientation discrimination task involving a 45 degree tilt comparatively hard. A second experiment with a discrete-trial conditional paradigm confirmed that discriminations of shape orientations can be difficult for these birds. The addition of shape cues improved the performance on the orientation discrimination task, more so when arbitrary shapes were employed than when mirror images were used, which indicates again that the latter were more difficult to discriminate than the former. The relative insensitivity to shape orientations is ascribed to normal ecological demands on pigeons.
Animals↗
The shape of supertrees to come: tree shape related properties of fourteen supertree methods.
Using a simple example and simulations, we explore the impact of input tree shape upon a broad range of supertree methods. We find that input tree shape can affect how conflict is resolved by several supertree methods and that input tree shape effects may be substantial. Standard and irreversible matrix representation with parsimony (MRP), MinFlip, duplication-only Gene Tree Parsimony (GTP), and an implementation of the average consensus method have a tendency to resolve conflict in favor of relationships in unbalanced trees. Purvis MRP and the average dendrogram method appear to have an opposite tendency. Biases with respect to tree shape are correlated with objective functions that are based upon unusual asymmetric tree-to-tree distance or fit measures. Split, quartet, and triplet fit, most similar supertree, and MinCut methods (provided the latter are interpreted as Adams consensus-like supertrees) are not revealed to have any bias with respect to tree shape by our example, but whether this holds more generally is an open problem. Future development and evaluation of supertree methods should consider explicitly the undesirable biases and other properties that we highlight. In the meantime, use of a single, arbitrarily chosen supertree method is discouraged. Use of multiple methods and/or weighting schemes may allow practical assessment of the extent to which inferences from real data depend upon methodological biases with respect to input tree shape or size.
Classification↗
Microtubule biogenesis and cell shape in Ochromonas. II. The role of nucleating sites in shape development.
The proposal made in the preceding paper that the species-specific shape of Ochromonas is mediated by cytoplasmic microtubules which are related to two nucleating sites has been experimentally verified. Exposure of cells to colchicine or hydrostatic pressure causes microtubule disassembly and a correlative loss of cell shape in a posterior to anterior direction. Upon removal of colchicine or release of pressure, cell shape regenerates and microtubules reappear, first in association with the kineto-beak site concomitant with regeneration of the anterior asymmetry, and later at the rhizoplast site concomitant with formation of the posterior tail. It is concluded that two separate sets of cytoplasmic tubules function in formation and maintenance of specific portions of the total cell shape. On the basis of the following observations, we further suggest that the beak and rhizoplast sites could exert control over the position and timing of the appearance, the orientation, and the pattern of microtubule distribution in Ochromonas. (a) the two sites are accurately positioned in the cell relative to other cell organelles; (b) in regenerating cells microtubules reform first at these sites and appear to elongate to the cell posterior; (c) microtubules initially reappear in the orientation characteristic of the fully differentiated cell; (d) the two sets of tubules are polymerized at different times, in the same sequence, during reassembly or resynthesis of the microtubular system. Experiments using cycloheximide, after a treatment with colchicine, have demonstrated that Ochromonas cannot reassume its normal shape without new protein synthesis. This suggests that microtubule protein once exposed to colchicine cannot be reassembled into microtubules. Pressure-treated cells, on the other hand, reassemble tubules and regenerate the normal shape in the presence or absence of cycloheximide. The use of these two agents in analyzing nucleating site function and the independent processes of synthesis and assembly of microtubules is discussed.
Amino Acids↗
The shape of boubas: sound-shape correspondences in toddlers and adults.
A striking demonstration that sound-object correspondences are not completely arbitrary is that adults map nonsense words with rounded vowels (e.g. bouba) to rounded shapes and nonsense words with unrounded vowels (e.g. kiki) to angular shapes (Köhler, 1947; Ramachandran & Hubbard, 2001). Here we tested the bouba/kiki phenomenon in 2.5-year-old children and a control group of adults (n =20 per age), using four pairs of rounded versus pointed shapes and four contrasting pairs of nonsense words differing in vowel sound. Overall, participants at both ages matched words with rounded vowels to the rounder shapes and words with unrounded vowels to the pointed shapes (both ps < .0005), with no significant difference between the two ages (p > .10). Such naturally biased correspondences between sound and shape may influence the development of language.
Adolescent↗
Distal-tip shape-consistency testing of steam-shaped microcatheters suitable for cerebral aneurysm coil placement.
BACKGROUND AND PURPOSE: Although the selection of microcatheter for endovascular aneurysmal treatment is one important factor in patient outcome, the use of steam shaping for achieving safe entry and stability during coil placement has not, to our knowledge, been systematically evaluated. The goal of this study was to compare the durability of distal microcatheter steam shaping in five different catheters with typical intraprocedural stresses that are similar to those encountered during aneurysm coil placement. METHODS: Distal tips of microcatheters were shaped into a 90 degrees turn with distal straight-segment lengths of 3, 5, or 7 mm by using steam, performed according to the instructions for use included with each catheter. In a water bath kept at body temperature, the changes in catheter tip angle were recorded and measured following microcatheter insertion into a guiding catheter, microguidewire insertion through the microcatheter, and Guglielmi detachable coil (GDC) placement through the microcatheter. RESULTS: The degree of distal microcatheter straightening with typical intraprocedural manipulations was more pronounced on braided microcatheters and on microcatheters with 3- or 5-mm distal-shaped segments. The degree of spontaneous recovery of the initially steamed shape was more pronounced with nonbraided catheters. The most significant single variable contributing to straightening of a steam-shaped catheter tip was the effect of microguidewire insertion. The catheter-tip straightening effect encountered with inserting GDCs was less than that encountered with microguidewire insertion. We demonstrated that the decreased catheter-tip angle encountered with a large-magnitude straightening stress spontaneously recovered once the stress was removed or when it was reduced to a smaller magnitude stress. CONCLUSION: Our study shows that, although braided microcatheters are suitable for maintaining durable configurations when long distal-tip lengths are permissible, nonbraided microcatheters demonstrate the most durable distal-tip configurations when short distal-tip lengths are called for. This may be one of significant factors in catheter choice for endovascular treatment of aneurysm.
Catheterization↗
Axisymmetric Drop Shape Analysis: Computational Methods for the Measurement of Interfacial Properties from the Shape and Dimensions of Pendant and Sessile Drops.
State-of-the-art axisymmetric drop shape analysis (ADSA) techniques for the computation of interfacial tensions and contact angles by fitting the Laplace equation of capillarity to the shape and dimensions of pendant and sessile drops are presented. More accurate, efficient, and reliable versions of the technique for the measurement of contact angles from the volume and diameter of sessile drops [axisymmetric drop shape analysis-diameter (ADSA-D)] and for interfacial tension measurements from a series of arbitrary profile coordinates of sessile and pendant drops [axisymmetric drop shape analysis-profile (ADSA-P)] have been developed. Advanced numerical methods have been used to improve the numerical stability and global convergence, for more accurate results and a wider range of applicability of the methods. A new technique called axisymmetric drop shape analysis-height and diameter (ADSA-HD) has been developed to estimate interfacial tensions from the height and diameter of sessile and pendant drops. Numerical simulations using numerically generated drop profiles were used to evaluate the accuracy and applicability of the methods. Copyright 1997 Academic Press.
Journal Article↗
The accuracy of field shape definition using standard shielding blocks and the consequences for field shape verification.
The accuracy of field shaping using standard shielding blocks has been investigated in 157 fields in the thoracic region, the majority for treatment of lung cancer. Accuracy was defined as the width of the tolerance margin around the prescribed field outline that would be needed to accept the full megavoltage field boundary. The use of several positioning aids was evaluated, including a cardboard template that was created with the data already specified for field shape verification of megavoltage fields. Block positioning via tattoos on the skin gives large random field shape errors: assuming a tolerance margin of +/- 5 mm, approximately 50% of these fields would have to be rejected. When a transparent sheet with a drawing of the required field outline was used as positioning aid on the tray without an explicit quality control of the sheet itself approximately 24% of the fields would not be accepted because of an error in the sheet (systematic error) and approximately 20% because of a discrepancy in block position relative to the actual prescription of the sheet (random error). If block positioning is performed via a cardboard template of which the prescription was checked to be better than 3 mm measured in the plane of the isocentre, approximately 96% of the fields will be accepted assuming a tolerance margin of +/- 5 mm: the risk of misplacement of blocks appeared to be very low. Integration of prescription, preparation of the cardboard template, quality control of the template and verification of the megavoltage field shape results in an easy, accurate and reliable way of field shape definition using standard blocks.
Equipment Design↗
Shape transitions and shape stability of giant phospholipid vesicles in pure water induced by area-to-volume changes.
Shape transformations of vesicles of dimyristoylphosphatidylcholine (= DMPC) and palmitoyloleylphosphatidylcholine (= POPC) in ion-free water were induced by changing the area-to-volume ratio via temperature variations. Depending on the pretreatment we find several types of shape changes for DMPC (in pure water) at increasing area-to-volume ratio: (a) budding transitions leading to the formation of a chain of vesicles at further increase of the area-to-volume ratio, (b) discocyte-stomatocyte transitions, (c) reentrant dumbbell-pear-dumbbell transitions, and (d) spontaneous blebbing and/or tether formation of spherical vesicles. Beside these transitions a more exotic dumbbell-discocyte transition (e) was found which proceeded via local instabilities. Pears, discocytes, and stomatocytes are stable with respect to small temperature variations unless the excess area is close to values corresponding to limiting shapes of budded vesicles where temperature variations of less than or equal to 0.1 degree C lead to spontaneous budding to the inside or the outside. For POPC we observed only budding transitions to the inside leading either to chains of vesicles or to distributions of equally sized daughter vesicles protruding to the inside of the vesicle. Preliminary experiments concerning the effect of solutes are also reported. The first three types of shape transitions can be explained in terms of the bilayer coupling model assuming small differences in thermal expansivities of the two monolayers. This does not hold for the observed instabilities close to the limiting shapes.
Dimyristoylphosphatidylcholine↗
Device based left ventricular shape change: validation of conductance technology in shape changed hearts.
We have reported that device based left ventricular (LV) shape change, accomplished by Myosplint, improved LV systolic function by three-dimensional echocardiography (3-D echo). However, evaluation of this device using the pressure-volume relationship is still important. This study was conducted to validate the use of conductance technology for this evaluation in shape-changed hearts. An ex vivo study using excised ovine hearts (n = 11) and an in vivo study using a canine pacing-induced heart failure model (n = 11) were performed. Three Myosplints were implanted. Before and after the shape changes, volumes measured by a conductance catheter were compared with volumes measured by the amount of saline in the ex vivo study or by 3-D echo in the in vivo study. The conductance volumes were linearly correlated with the saline volumes (r2 = 0.961+/-0.046; p < 0.0001) in the ex vivo study and with 3-D echo volumes (r2 = 0.757+/-0.220; p < 0.0001) in the in vivo study. The conductance volumes were linearly correlated with LV volumes even in the shape-changed hearts. This technology can be used to evaluate pressure-volume loops in the shape-changed hearts as long as the conductance volume is calibrated by a reliable method.
Animals↗
Assessment of shape variation of the levator ani with optimal scan planning and statistical shape modeling.
OBJECTIVE: To capture 3D shape variation of the levator ani during straining with open access MR imaging. METHODS: Optimal scan-planning based on statistical shape modeling is developed for recovering the entire 3D structure of the levator ani from a limited number of 2D imaging planes. Statistical shape modeling ensures optimum material correspondence, and Subspace Reprojection is used to identify the optimum orientation of the imaging plans. The accuracy of the method in using limited 2D imaging planes to instantiate the dynamic structure of the levator ani is assessed with data acquired from 10 asymptomatic subjects. RESULTS: Leave-one-out analysis was performed whereby a model based on a training set consisting of all but one surface was used to instantiate the dynamic surface structure from the corresponding optimal planes. The mean surface distance error for the proposed Subspace Reprojection method is 3.989 +/- 0.790 mm, which is significantly smaller than other approaches. CONCLUSIONS: Surfaces of the levator ani may be instantiated using a limited number of imaging planes as well as a statistical shape model based on a training set of subjects. The proposed technique offers a new way forward for studying dynamic shape changes of 3D structures where complete volumetric imaging is prohibited by the inherent temporal resolution of the scanning technique.
Adult↗
Comparison of infant head shape changes in deformational plagiocephaly following treatment with a cranial remolding orthosis using a noninvasive laser shape digitizer.
Deformational Plagiocephaly (DP) is a multi-planar deformity of the cranium occurring either pre-or postnatally in infants. In the last decade, the incidence of DP has increased substantially due to a number of factors, including supine sleeping positioning to reduce Sudden Infant Death Syndrome and the use of child carriers that increase supine positioning. Clinical questions persist about which children should be treated for DP and how to intervene, questions that are difficult to answer without accurate documentation of three-dimensional (3-D) head shape. This study explored a method for quantifying head shape and used that method to evaluate the success of orthotic treatment. Two hundred twenty-four infants who were diagnosed with DP received either a cranial remolding orthosis or a repositioning program with no orthotic intervention. Data from 25 head shape variables were collected using a noninvasive laser shape digitizer. Only variables attributable to growth showed significant differences in the control population, while the treatment population showed significant differences in pre-and post-treatment values for all variables. The study identified four variables as particularly important in assessing the head shape of infants with plagiocephaly: the cranial vault asymmetry index, radial symmetry index, posterior symmetry ratio, and overall symmetry ratio. Ninety-six percent or more of subjects in the treatment group showed improvement in each variable. These data document the utility of a 3-D scanning device and the effectiveness of treatment with a cranial remolding orthosis.
Analysis of Variance↗
"Shape activity": a continuous-state HMM for moving/deforming shapes with application to abnormal activity detection.
The aim is to model "activity" performed by a group of moving and interacting objects (which can be people, cars, or different rigid components of the human body) and use the models for abnormal activity detection. Previous approaches to modeling group activity include co-occurrence statistics (individual and joint histograms) and dynamic Bayesian networks, neither of which is applicable when the number of interacting objects is large. We treat the objects as point objects (referred to as "landmarks") and propose to model their changing configuration as a moving and deforming "shape" (using Kendall's shape theory for discrete landmarks). A continuous-state hidden Markov model is defined for landmark shape dynamics in an activity. The configuration of landmarks at a given time forms the observation vector, and the corresponding shape and the scaled Euclidean motion parameters form the hidden-state vector. An abnormal activity is then defined as a change in the shape activity model, which could be slow or drastic and whose parameters are unknown. Results are shown on a real abnormal activity-detection problem involving multiple moving objects.
Algorithms↗