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At least 55 records · Page 3Linked to original sources

Rapid prototyping techniques for anatomical modelling in medicine.

The rapid advances in computer technology, often driven by the demands of industry, have created new possibilities in surgery which previous generations of surgeons could only have imagined. Improved imaging with computerised tomography (CT) has been followed by magnetic resonance imaging (MRI) and, more recently, it has become possible to reformat the data as three-dimensional images. Computer technology has new moved forward with the advent of rapid prototyping techniques (RPT) which allow both the production of models of the hard tissues and custom-made prostheses from computerised scanning data. In this article we review the development and current technologies available in RPT and the applications of this advance in surgery and illustrate this with two case reports.

Child↗

Collision handling of deformable anatomical models for real-time surgery simulation.

Efficient collision handling of dynamically deforming anatomical models is a very challenging problem in real-time surgery simulation. In this paper, we present a new, efficient approach that detects collisions and self-collisions of deformable models. Our algorithm is integrated in a simulation framework for multiple interacting objects. This framework consists of three components. The first one computes the dynamic behavior of deformable structures using an efficient and robust approach with distance- and volume-preserving constraints. The second component detects collisions and self-collisions of deformable models. A novel image-space technique is employed that detects volumetric intersections. This allows to compute the penetration depth which is used to resolve collisions in the third component of our framework. Our system handles volumetric deformable models of up to several thousand surface triangles and tetrahedra in real-time and can be used in surgical training systems.

Algorithms↗

Anatomical model of the cochlea of the alligator lizard.

The three-dimensional structure of the cochlea of the alligator lizard was examined and an anatomical model was constructed. Separate pieces of the model represent the cochlear duct and posterior branch of the eighth cranial nerve. These pieces fit together inside a transparent plastic piece that represents the bony capsule. In this paper, the method used to construct the anatomical model is described, and three-dimensional features of cochlear anatomy are illustrated.

Animals↗

Hypothetical anatomical model to describe the aberrant gag reflex observed in a clinical population of orally deprived children.

In this 'clinical conundrum', we propose a hypothetical anatomical model to explain the abnormal gag reflex that is consistently observed in a clinical population of children experiencing feeding delays. This model is based on the presence of 'transient' connections formed during the normal development of autonomic brainstem circuitry involving the nucleus tractus solitarius (NTS). We propose that, as a result of normal feeding and swallowing, the activity of these transient fibers typically diminishes shortly after birth. In children who are orally deprived during infancy, these transient connections persist and the aberrant gag reflex is maintained into childhood. The most critical feature of the proposed model is the idea that swallowing during feeding initiates the retraction of the tactile 'transient' input to NTS. In the NICU feeding clinics, it has been suggested that triggering the gag reflex in neonates by tactile stimulation of non-oral body areas and anterior portions of the mouth directly or indirectly may contribute to oral feeding delays. To the contrary, we propose an anatomical model to suggest that oral feeding delays and lack of swallowing food, when experienced by neonates, actually contribute to the development of the aberrant gag reflex observed in later developmental stages.

Deglutition↗

Fluence-to-dose conversion coefficients for monoenergetic proton beams based on the VIP-Man anatomical model.

A new set of fluence-to-absorbed dose and fluence-to-effective dose conversion coefficients has been calculated for high-energy protons using the whole-body anatomical model VIP-Man, which was developed from the high-resolution transverse colour photographic images of the National Library of Medicine's Visible Human Project. For 10 monoenergetic proton beams between 20 and 10,000 MeV, organ dose calculations were performed using the Monte Carlo code MCNPX under six different irradiation geometries: anterior-posterior, posterior-anterior, left lateral, right lateral, isotropic and rotational. The absorbed dose results for 24 major organs of VIP-Man are presented and compared with those based on mathematical phantoms reported in the literature. The discrepancies (generally within 40%) in organ dose and effective dose estimates are attributed to the use of different transport models employed by different Monte Carlo codes.

Adult↗

Fluence-to-dose conversion coefficients based on the VIP-Man anatomical model and MCNPX code for monoenergetic neutrons above 20 MeV.

A new set of fluence-to-absorbed dose and fluence-to-effective dose conversion coefficients has been calculated for high-energy neutrons using a whole-body anatomical model, VIP-Man, developed from the high-resolution transversal color photographic images of the National Library of Medicine's Visible Human Project. Organ dose calculations were performed using the Monte Carlo code MCNPX for 20 monoenergetic neutron beams between 20 MeV and 10,000 MeV under 6 different irradiation geometries: anterior-posterior, posterior-anterior, left lateral, right lateral, isotropic, and rotational. For neutron Monte Carlo calculations, results based on an image-based whole-body model were not available in the literature. The absorbed dose results for 24 major organs of VIP-Man are presented in the form of tables and selected figures that compare with those based on simplified mathematical phantoms reported in the literature. VIP-Man yields up to 40% larger values of effective dose and many organ doses, thus suggesting that the results reported in the past may not be conservative.

Humans↗

Anatomical model matching with fuzzy implicit surfaces for segmentation of thoracic volume scans.

Many segmentation methods for thoracic volume data require manual input in the form of a seed point, initial contour, volume of interest etc. The aim of the work presented here is to further automate this segmentation initialization step. In this paper an anatomical modeling and matching method is proposed to coarsely segment thoracic volume data into anatomically labeled regions. An anatomical model of the thorax is constructed in two steps: 1) individual organs are modeled with blended fuzzy implicit surfaces and 2) the single organ models are grouped into a tree structure with a solid modeling technique named constructive solid geometry (CSG). The combination of CSG with fuzzy implicit surfaces allows a hierarchical scene description by means of a boundary model, which characterizes the scene volume as a boundary potential function. From this boundary potential, an energy function is defined which is minimal when the model is registered to the tissue-air transitions in thoracic magnetic resonance imaging (MRI) data. This allows automatic registration in three steps: feature detection, initial positioning and energy minimization. The model matching has been validated in phantom simulations and on 15 clinical thoracic volume scans from different subjects. In 13 of these sets the matching method accurately partitioned the image volumes into a set of volumes of interest for the heart, lungs, cardiac ventricles, and thorax outlines. The method is applicable to segmentation of various types of thoracic MR-images, provided that a large part of the thorax is contained in the image volume.

Heart↗

Automatic segmentation of the left ventricle in 3D SPECT data by registration with a dynamic anatomic model.

We present a fully automatic 3D segmentation method for the left ventricle (LV) in human myocardial perfusion SPECT data. This model-based approach consists of 3 phases: 1. finding the LV in the dataset, 2. extracting its approximate shape and 3. segmenting its exact contour. Finding of the LV is done by flexible pattern matching, whereas segmentation is achieved by registering an anatomical model to the functional data. This model is a new kind of stable 3D mass spring model using direction-weighted 3D contour sensors. Our approach is much faster than manual segmention, which is standard in this application up to now. By testing it on 41 LV SPECT datasets of mostly pathological data, we could show, that it is very robust and its results are comparable with those made by human experts.

Artificial Intelligence↗

Simulation of non-contact measurement of the electrical impedance using an anatomical model.

The measurement of the impedance of biological tissue can be a non-invasive method to find new data of diagnostic relevance. A system for a non-contact measurement of the electrical impedance of biological tissue is presented. The system consists of an excitation coil and two sensing coils, an upper and a lower coil. If the two sensing coils are coupled it can be used as a gradiometer coil. Numerical experiments with focus on the eddy currents in the tissue and on the detection of the small changes of the signal are carried out to calculate the fields, eddy current distributions and induced voltages. Hereby tests with different frequencies of the excitation current and different conductivities of a tissue block are used. Then the homogeneous tissue block is replaced with a fraction of the arm of an anatomical model which contains different tissue classes.

Computer Simulation↗

A novel retrograde-viewing auxiliary imaging device (Third Eye Retroscope) improves the detection of simulated polyps in anatomic models of the colon.

BACKGROUND: Colonoscopy is the "gold standard" for colorectal polyp and cancer detection, but important lesions may be missed on the proximal aspect of haustral folds, rectal valves, or flexures. OBJECTIVE: Our purpose was to evaluate a prototype auxiliary imaging device that extends beyond the colonoscope's tip, providing a continuous retrograde view to detect lesions missed by the forward-viewing colonoscope. DESIGN: Three anatomic models of the colon were prepared with simulated polyps, 32% in obvious locations and 68% on the proximal aspect of folds. Six endoscopists examined each model with two methods. Method A used a standard video colonoscope. Method B involved an identical colonoscope with a retrograde-viewing auxiliary device positioned within its instrument channel. Order of testing was randomized and blinded. SETTING: Laboratory bench. MAIN OUTCOME MEASUREMENTS: Detection rates for simulated polyps. RESULTS: Of 78 "obvious" polyps, 69 (88%) and 70 (90%) were detected by methods A and B, respectively (P > .9). In contrast, of 162 polyps on proximal aspects of folds, 20 (12%) and 131 (81%) were detected by methods A and B, respectively (P < .00001). LIMITATIONS: Limitations resulted from (1) use of commercially available anatomic models in which haustral folds are less prominent and more rigid than in humans and (2) evaluation of a prototype device that had larger size and narrower angle of view than the planned production model and that was fixed in relation to the colonoscope. CONCLUSIONS: In simulated testing, a retrograde-viewing auxiliary imaging device used with a standard video colonoscope significantly improves detection rates of simulated polyps and promises to enhance the diagnostic yield of colonoscopy in humans.

Colonic Polyps↗

Conversion coefficients based on the VIP-Man anatomical model and EGS4.

A new set of conversion coefficients from kerma free-in-air to absorbed dose and kerma free-in-air to "effective VIP-Man dose" has been calculated for external monoenergetic photon beams from 10 keV to 10 MeV using an image-based whole-body anatomical model. This model, called VIP-Man, was recently developed at Rensselaer from the high-resolution color images of the National Library of Medicine's Visible Human Project. An EGS4-based Monte Carlo user code, named EGS4-VLSI, was developed to efficiently process the extremely large image data in VIP-Man. Irradiation conditions include anterior-posterior, posterior-anterior, right lateral, left lateral, rotational, and isotropic geometries. Conversion coefficients from this study are compared with those obtained from two mathematical models, ADAM and EVA. "Effective VIP-Man doses" differ from the previously reported effective dose results by 10%-50% for photons between 100 keV and 10 MeV. Discrepancies are more significant at lower energies and for individual organ doses. Since VIP-Man is a realistic model that contains several tissues that were not previously defined well (or not available) in other models, the reported results offer an opportunity to improve the existing dosimetric data and the mathematical models.

Air Pollutants, Radioactive↗

An in vitro anatomic model of the human cerebral arteries with saccular arterial aneurysms.

An in vitro model of the main human cerebral arteries with or without saccular arterial aneurysms is presented. A cast of the cerebral arteries was obtained in a human specimen. Three aneurysms were simulated and added to the cast. Wax copies of the cast were produced, and embedded with liquid resin solidifying into solid blocks. After evacuation of the wax, a model consisting of a hollow reproduction of the cast within the resin block was obtained. The model is reproducible and anatomically accurate. Since it is transparent to visible light, and compatible with x-ray, magnetic resonance and transcranial doppler techniques, it should prove useful for a wide range of haemodynamic and radiologic investigations. The reported technique may be adapted to any structure with a hollow configuration, allowing for the preparation of arterial and venous models from other vascular areas, as well as models from other anatomic systems, such as the biliary or urinary tracts.

Cerebral Arteries↗

Fluence-to-dose conversion coefficients from monoenergetic neutrons below 20 MeV based on the VIP-man anatomical model.

A new set of fluence-to-absorbed dose and fluence-to-effective dose conversion coefficients have been calculated for neutrons below 20 MeV using a whole-body anatomical model, VIP-Man, developed from the high-resolution transverse colour photographic images of the National Library of Medicine's Visible Human Project. Organ dose calculations were performed using the Monte Carlo code MCNP for 20 monoenergetic neutron beams between 1 x 10(-9) MeV and 20 MeV under six different irradiation geometries: anterior-posterior, posterior-anterior, right lateral, left lateral, rotational and isotropic. The absorbed dose for 24 major organs and effective dose results based on the realistic VIP-Man are presented and compared with those based on the simplified MIRD-based phantoms reported in the literature. Effective doses from VIP-Man are not significantly different from earlier results for neutrons in the energy range studied. There are, however, remarkable deviations in organ doses due to the anatomical differences between the image-based and the earlier mathematical models.

Algorithms↗

XVIII century anatomical models at La Specola, Florence.

At 17 via Romana in the Oltrarno section of Florence are housed, in the Natural History Museum (La Specola), some of the most interesting anatomical models ever made. In the 2 centuries since these wax models were made they have not been surpassed in their true-to-life appearance in spite of modern technology. Unfortunately the models are little known to health scientists, including anatomists, especially in the English-speaking countries. This study presents pertinent historical and descriptive facts about the models--each piece a perfect blend of science and art--and about copies of them or satellite collections in other European countries. The anatomical source for these models is the work of the Dutch Anatomist, Bernard Siegfried Albinus (1697 to 1770) and Jan Wanderlaer (1690-1759), his artist and engraver. It also discusses the little known fact that copies of some of these models were purchased in 1850 for the then Medical Department of the University of Louisiana in New Orleans.

Anatomy↗

Temporal analysis of the October 1989 proton flare using computerized anatomical models.

The GOES-7 time history data of hourly averaged integral proton fluxes at various particle kinetic energies are analyzed for the solar proton event that occurred between October 19 and 29, 1989. By analyzing the time history data, the dose rates which may vary over many orders of magnitude in the early phases of the flare can be estimated as well as the cumulative dose as a function of time. Basic transport calculations are coupled with detailed body organ thickness distributions from computerized anatomical models to estimate dose rates and cumulative doses to 20 critical body organs. For a 5-cm-thick water shield, cumulative skin, eye, and blood-forming-organ dose equivalents of 1.27, 1.23, and 0.41 Sv, respectively, are estimated. These results are approximately 40-50% less than the widely used 0- and 5-cm slab dose estimates. The risk of cancer incidence and mortality are also estimated for astronauts protected by various water shield thicknesses.

Humans↗

Method for segmenting chest CT image data using an anatomical model: preliminary results.

We present an automated, knowledge-based method for segmenting chest computed tomography (CT) datasets. Anatomical knowledge including expected volume, shape, relative position, and X-ray attenuation of organs provides feature constraints that guide the segmentation process. Knowledge is represented at a high level using an explicit anatomical model. The model is stored in a frame-based semantic network and anatomical variability is incorporated using fuzzy sets. A blackboard architecture permits the data representation and processing algorithms in the model domain to be independent of those in the image domain. Knowledge-constrained segmentation routines extract contiguous three-dimensional (3-D) sets of voxels, and their feature-space representations are posted on the blackboard. An inference engine uses fuzzy logic to match image to model objects based on the feature constraints. Strict separation of model and image domains allows for systematic extension of the knowledge base. In preliminary experiments, the method has been applied to a small number of thoracic CT datasets. Based on subjective visual assessment by experienced thoracic radiologists, basic anatomic structures such as the lungs, central tracheobronchial tree, chest wall, and mediastinum were successfully segmented. To demonstrate the extensibility of the system, knowledge was added to represent the more complex anatomy of lung lesions in contact with vessels or the chest wall. Visual inspection of these segmented lesions was also favorable. These preliminary results suggest that use of expert knowledge provides an increased level of automation compared with low-level segmentation techniques. Moreover, the knowledge-based approach may better discriminate between structures of similar attenuation and anatomic contiguity. Further validation is required.

Computer Simulation↗

A new, biventricular working heterotopic heart transplant model: anatomic and physiologic considerations.

BACKGROUND: Current heterotopic heart transplant models have nonworking left ventricles that atrophy and are not suitable for some studies. We developed and characterized a new heterotopic model with working left and right ventricles. METHODS: Hemodynamics were compared in the working and nonworking models. The influence of the length of the donor's aorta on coronary arterial oxygenation was tested. The influence of the recipient's arterial pressure on developed left ventricular systolic pressure and the effects of alpha- and beta-adrenergic stimulation were examined in both models. The nonworking and working models were compared in chronic transplant preparations to investigate possible ventricular atrophy. RESULTS: In this model, coronary arterial oxygen tension was influenced by the length of the donor's aorta. With a short donor aorta (0.5 cm in the porcine model), normal coronary arterial oxygenation is maintained. Left ventricular systolic pressure was greater in the working compared with the nonworking models. Left ventricular systolic pressure did not respond to alpha-adrenergic stimulation but did respond to beta-adrenergic and combined stimulation, which indicates its relationship to donor heart output. Left ventricular systolic pressure correlated with and was determined by recipient arterial pressure. Ventricular atrophy occurred in the nonworking model, but ventricular weight was maintained at sham control levels in this new working model. CONCLUSION: These results demonstrate the surgical anatomic considerations of a new heterotopic heart transplant model in which the left and right ventricles work. Its hemodynamic performance is related to recipient hemodynamics, and the model responds to adrenergic stimulation. In chronic studies, ventricular mass is maintained, thus allowing this model to overcome a significant shortcoming of existing heterotopic heart transplant models.

Animals↗

Imaging the heart: computer 3-dimensional anatomic models of the heart.

Since the 1960s, models of the action potential in various cardiac cell types have been developed, and since the 1990s, 3-dimensional anatomic (or geometric) models of various cardiac structures have been developed. We are approaching the time when, for one species, we should have a complete set of action potential and anatomic models for the various cardiac tissues and then we will have realized the aim of constructing a "virtual heart" with accurate anatomy and electrophysiology. However, already the two types of model are beginning to be used in tandem to reconstruct the activation sequence of the heart both during sinus rhythm and arrhythmias.

Action Potentials↗