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PubMed2004

The evolution of premating isolation: local adaptation and natural and sexual selection against hybrids.

Although reinforcement is ostensibly driven by selection against hybrids, there are often other components in empirical cases and theoretical models of reinforcement that may contribute to premating isolation. One of these components is local adaptation of a trait used in mate choice. I use several different comparisons to assess the roles that local adaptation and selection against hybrids may play in reinforcement models. Both numerical simulations of exact recursion equations and analytical weak selection approximations are employed. I find that selection against hybrids may play a small role in driving preference evolution in a reinforcement model where the mating cue is separate from loci causing hybrid incompatibilities. When females have preferences directly for purebreds of their own population, however, selection against hybrids can play a large role in premating isolation evolution. I present some situations in which this type of selection is likely to exist. This work also illustrates shortfalls of using a weak selection approach to address questions about reinforcement.

Adaptation, Biological↗
PubMed2001

Gene flow versus local adaptation in the northern acorn barnacle, Semibalanus balanoides: insights from mitochondrial DNA variation.

In reciprocal transplant experiments, Bertness and Gaines (1993) found that Semibalanus balanoides juveniles that had settled in an upper Narragansett Bay estuary survived better in that estuary that did juveniles from coastal localities. The observed pattern of survivorship led to the claim that local adaptation may result from a combination of limited gene flow between and strong selection within these habitats. Here we test the hypothesis that limited gene flow has led to habitat-specific population differentiation using sequence and restriction fragment length polymorphism analyses of the mitochondrial DNA D-loop region of S. balanoides. Samples were analyzed from replicated coastal and estuary localities in both Narragansett Bay, Rhode Island, and Damariscotta River, Maine. The patterns of F(ST) indicate that gene flow between coast and estuary is extensive (Nm > 100) and is not lower in the estuary with lower flushing rates (Narragansett Bay). Given the high estimate of genetic exchange, adaptations for unpredictable environments seem more likely than local adaptation in this species because loci that respond to selection in one generation are essentially homogenized by the next seasons' settlement. Nevertheless, these estimates of neutral gene flow can help identify the strength of selection necessary for local adaptation to accumulate in Semibalanus.

Animals↗
PubMed2006

Geographic biotype and host-associated local adaptation in a polyphagous species, Lambdina fiscellaria (Lepidoptera: Geometridae) feeding on balsam fir on Anticosti Island, Canada.

The debate about mechanisms underlying the evolution of host specialization by herbivorous insects remains open. Natural selection may act locally and lead to different patterns of geographic variation in life history traits of polyphagous herbivores. The hypothesis of genetically-based trade-offs in offspring performance on different hosts has been proposed but this has rarely been demonstrated. Under laboratory conditions, the biological performance of two populations of the hemlock looper Lambdina fiscellaria (Guenée), a highly polyphagous lepidopteran, was compared when reared on three different tree host species: balsam fir, eastern hemlock and sugar maple. One population originated from Anticosti Island, Québec, Canada, where the insect has evolved without having access to two of the three tree species tested, the other being from the mainland where all tree species are present. When reared on balsam fir foliage, which was naturally available to each population, larvae from Anticosti Island underwent four instars compared with five for the mainland population, indicating the existence of geographic biotypes in L. fiscellaria. When reared on the foliage of non-naturally available host trees, larvae from Anticosti Island had a higher incidence of supernumerary instars. This is a unique example where local adaptation to environmental conditions of an insect herbivore is expressed through a differential number of larval instars. Moreover, the Anticosti Island population showed a higher growth related index on the host available to both populations indicating that a fitness trade-off was the evolutionary process underlying the local adaptation of this population on balsam fir.

Abies↗
PubMed2003

Local adaptation of an anuran amphibian to osmotically stressful environments.

Water salinity is an intense physiological stress for amphibians. However, some species, such as Bufo calamita, breed in both brackish and freshwater environments. Because selection under environmentally stressful conditions can promote local adaptation of populations, we examined the existence of geographic variation in water salinity tolerance among B. calamita populations from either fresh or brackish water ponds in Southern Spain. Comparisons were made throughout various ontogenetic stages. A combination of field transplant and common garden experiments showed that water salinity decreased survival probability of individuals in all populations, prolonged their larval period, and reduced their mass at metamorphosis. However, significant population x salinity interactions indicated that the population native to brackish water (Saline) had a higher salinity tolerance than the freshwater populations, suggesting local adaptation. Saline individuals transplanted to freshwater environments showed similar survival probabilities, length of larval period, and mass at metamorphosis than those native to freshwater. This indicates that increased tolerance to osmotic stress does not imply a loss of performance in freshwater, at least during the larval and juvenile phases. Despite the adaptive process apparently undergone by Saline, all populations still shared the same upper limit of embryonic stress tolerance (around 10 g/l), defining a window of salinity range within which selection can act. Significant differences in embryonic and larval survival in brackish water among sibships for all populations suggest the existence of a genetic basis for the osmotic tolerance.

Adaptation, Physiological↗
PubMed2006

[Quadrature Doppler ultrasound signal denoising based on adapted local cosine transform].

The spectrogram of Doppler ultrasound signal has been widely used in clinical diagnosis. The additional frequency components arising from internal or external noise to the system will produce adverse effects on its subjective and quantitative analysis. A novel approach based on the adapted local cosine transform and the non-negative Garrote thresholding method was proposed to remove noise from quadrature Doppler signal. At first, the directional information was extracted from the quadrature signal. And then the denoising method based on the adapted local cosine transform is performed on the forward and backward flow signals, respectively. At last, the estimated signal was reconstructed from the denoised signals using Hilbert transform. In the simulation study, both the mean frequency and spectral width waveform were studied for the denoised signal. The simulation results had shown that this approach was superior to that based on the wavelet transform, especially under low SNR conditions.

Algorithms↗
PubMed2005

Influence of local adaptation and interstock hybridization on the cardiovascular performance of largemouth bass Micropterus salmoides.

In this study, the cardiovascular response to exhaustive exercise among differentiated stocks of largemouth bass Micropterus salmoides was compared at 10 degrees C and 20 degrees C to assess the level of their local adaptation. In addition, the impact that interstock hybridization had on adaptive differences was assessed using F1 hybrids. To accomplish these assessments, four genetically distinct stocks of fish were produced using adults from two regions in the midwestern United States identified as distinct conservation management units (central Illinois, IL and southeastern Wisconsin, WI): both P1 stocks and both reciprocal F1 interstock hybrids. Cardiac variables (both resting and maximal) were consistently lowest for the IL x IL stock relative to the WI x WI stock and both F1 interstock hybrids. Interestingly, however, all groups of fish were able to maintain similar levels of cardiac scope. All fish responded to exercise by increasing heart rate and decreasing stroke volume, consistent with the notion that largemouth bass modulate cardiac output via frequency. After exercise, cardiac variables returned to resting levels 25-35% more rapidly for IL x IL fish relative to all other groups at 20 degrees C. At 10 degrees C, recovery rates for both P1 stocks were similar but more rapid than the interstock hybrids. Collectively, these results indicate that the locally adapted stock (IL x IL) exhibited cardiovascular adaptations that enabled rapid cardiovascular recovery and maintenance of low resting cardiac output and heart rate. Conversely, the translocated stock (WI x WI) and the interstock hybrids required longer for cardiovascular variables to recover after exercise and exhibited higher resting levels of cardiac output and heart rate. This study provides some of the first direct evidence of a physiological mechanism by which mixing stocks could potentially decrease fitness and illustrates the magnitude of the intraspecific diversity of cardiovascular performance.

Adaptation, Physiological↗
PubMed2025

Heat-Induced Secondary Dormancy Contributes to Local Adaptation in Arabidopsis thaliana.

Seeds should not germinate in conditions unsuitable for seedling growth. Dormancy, which allows seeds to remain inactive in an environment that would otherwise enable germination, helps optimise the timing of germination. Primary dormancy, developed during seed maturation on the parent plant, prevents immediate germination post-dispersal, regardless of external conditions. Secondary dormancy, however, is triggered post-dispersal when seeds face unfavourable conditions, enabling them to re-enter dormancy even if initially non-dormant. This mechanism allows seeds to fine-tune germination according to environmental conditions. In this study, we examined the role of heat-induced secondary dormancy in local adaptation by analysing natural variations within 361 Arabidopsis thaliana accessions from across Europe. We discovered that secondary dormancy acquisition varies with primary dormancy levels and after-ripening. Both primary and heat-induced secondary dormancy exhibited adaptive clines along temperature and precipitation gradients, with secondary dormancy showing a steeper cline, indicating its significant role in local adaptation. Using species distribution models, we predicted that genotypes with high secondary dormancy would show greater resilience to future climate changes. Additionally, we identified specific genomic regions controlling secondary dormancy levels including a novel candidate gene for secondary dormancy variation. Our findings show that secondary dormancy is a complex adaptive mechanism and a predominant contributor to the dormancy trait syndrome that favours plant survival in habitats exposed to harsh summers.

Arabidopsis↗
PubMed2005

Dispersal in a parasitic worm and its two hosts: consequence for local adaptation.

Characterizing host and parasite population genetic structure and estimating gene flow among populations is essential for understanding coevolutionary interactions between hosts and parasites. We examined the population genetic structure of the trematode Schistosoma mansoni and its two host species (the definitive host Rattus rattus and the intermediate host Biomphalaria glabrata) using microsatellite markers. Parasites were sampled from rats. The study was conducted in five sites of the Guadeloupe Island, Lesser Antilles. Mollusks display a pattern of isolation by distance whereas such a pattern is not found neither in schistosomes nor in rats. The comparison of the distribution of genetic variability in S. mansoni and its two host species strongly suggests that migration of parasites is principally determined by that of the vertebrate host in the marshy focus of Guadeloupe. However, the comparison between genetic differentiation values in schistosomes and rats suggests that the efficacy of the schistosome rat-mediated dispersal between transmission sites is lower than expected given the prevalence, parasitic load and migration rate of rats among sites. This could notably suggest that rat migration rate could be negatively correlated to the age or the infection status of individuals. Models made about the evolution of local adaptation in function of the dispersal rates of hosts and parasites suggest that rats and mollusks should be locally adapted to their parasites.

Animals↗
PubMed2005

Local adaptation and species segregation in two mussel (Mytilus edulis x Mytilus trossulus) hybrid zones.

Few marine hybrid zones have been studied extensively, the major exception being the hybrid zone between the mussels Mytilus edulis and Mytilus galloprovincialis in southwestern Europe. Here, we focus on two less studied hybrid zones that also involve Mytilus spp.; Mytilus edulis and Mytilus trossulus are sympatric and hybridize on both western and eastern coasts of the Atlantic Ocean. We review the dynamics of hybridization in these two hybrid zones and evaluate the role of local adaptation for maintaining species boundaries. In Scandinavia, hybridization and gene introgression is so extensive that no individuals with pure M. trossulus genotypes have been found. However, M. trossulus alleles are maintained at high frequencies in the extremely low salinity Baltic Sea for some allozyme genes. A synthesis of reciprocal transplantation experiments between different salinity regimes shows that unlinked Gpi and Pgm alleles change frequency following transplantation, such that post-transplantation allelic composition resembles native populations found in the same salinity. These experiments provide strong evidence for salinity adaptation at Gpi and Pgm (or genes linked to them). In the Canadian Maritimes, pure M. edulis and M. trossulus individuals are abundant, and limited data suggest that M. edulis predominates in low salinity and sheltered conditions, whereas M. trossulus are more abundant on the wave-exposed open coasts. We suggest that these conflicting patterns of species segregation are, in part, caused by local adaptation of Scandinavian M. trossulus to the extremely low salinity Baltic Sea environment.

Adaptation, Biological↗
PubMed2003

Locally-adaptive and memetic evolutionary pattern search algorithms.

Recent convergence analyses of evolutionary pattern search algorithms (EPSAs) have shown that these methods have a weak stationary point convergence theory for a broad class of unconstrained and linearly constrained problems. This paper describes how the convergence theory for EPSAs can be adapted to allow each individual in a population to have its own mutation step length (similar to the design of evolutionary programing and evolution strategies algorithms). These are called locally-adaptive EPSAs (LA-EPSAs) since each individual's mutation step length is independently adapted in different local neighborhoods. The paper also describes a variety of standard formulations of evolutionary algorithms that can be used for LA-EPSAs. Further, it is shown how this convergence theory can be applied to memetic EPSAs, which use local search to refine points within each iteration.

Algorithms↗
PubMed2005

Information network topologies for enhanced local adaptive management.

We examined the principal effects of different information network topologies for local adaptive management of natural resources. We used computerized agents with adaptive decision algorithms with the following three fundamental constraints: (1) Complete understanding of the processes maintaining the natural resource can never be achieved, (2) agents can only learn by experimentation and information sharing, and (3) memory is limited. The agents were given the task to manage a system that had two states: one that provided high utility returns (desired) and one that provided low returns (undesired). In addition, the threshold between the states was close to the optimal return of the desired state. We found that networks of low to moderate link densities significantly increased the resilience of the utility returns. Networks of high link densities contributed to highly synchronized behavior among the agents, which caused occasional large-scale ecological crises between periods of stable and high utility returns. A constructed network involving a small set of experimenting agents was capable of combining high utility returns with high resilience, conforming to theories underlying the concept of adaptive comanagement. We conclude that (1) the ability to manage for resilience (i.e., to stay clear of the threshold leading to the undesired state as well as the ability to re-enter the desired state following a collapse) resides in the network structure and (2) in a coupled social-ecological system, the system-wide state transition occurs not because the ecological system flips into the undesired state, but because managers lose their capacity to reorganize back to the desired state.

Communication↗
PubMed2002

Comparative analysis of locally adaptive image enhancement for 3D ultrasound images.

In this article we compare methods for locally adaptive preprocessing of 3D ultrasound (US) images and their different capabilities of enhancing diagnostically important anatomical structures. We show that suitability and optimization of methods depend on the objective of the preprocessing task, e.g., slice representation or volume rendering. This article analyzes which features should be used to control the enhancement algorithm For slice representations optimization of local statistics is appropriate to maintain diagnostically important structures. Features with good region separation properties are preferable for volume rendering tasks. We demonstrate our results with US images from clinical examinations.

Algorithms↗
PubMed2006

Community-based disaster preparedness and climate adaptation: local capacity-building in the Philippines.

Community-based disaster preparedness (CBDP) approaches are increasingly important elements of vulnerability reduction and disaster management strategies. They are associated with a policy trend that values the knowledge and capacities of local people and builds on local resources, including social capital. CBDP may be instrumental not only in formulating local coping and adaptation strategies, but also in situating them within wider development planning and debates. In theory, local people can be mobilised to resist unsustainable (vulnerability increasing) forms of development or livelihood practices and to raise local concerns more effectively with political representatives. This paper focuses on the potential of CBDP initiatives to alleviate vulnerability in the context of climate change, and their limitations. It presents evidence from the Philippines that, in the limited forms in which they are currently employed, CBDP initiatives have the potential both to empower and disempower, and warns against treating CBDP as a panacea to disaster management problems.

Community Networks↗
PubMed2006

Noise reduction for doppler ultrasound signal based on the adapted local cosine transform and the garrote thresholding method.

In this paper, a novel approach, using the adapted local cosine transform combined with the non-negative garrote thresholding, is proposed to remove noise from the Doppler ultrasound signal. In the proposed approach, the local cosine transform is first performed on the signal of interest followed by a search algorithm to select the best basis. Then the coefficients of the obtained best basis are thresholded based on the non-negative garrote thresholding method. By means of the thresholded coefficients of the best basis, the signal is reconstructed. In the simulation study, the estimation precisions of the mean frequency waveform and the spectral width waveform are studied for the signal after denoising. The simulation and clinical results have shown that the proposed approach is superior to ones based on the wavelet transform, especially under low signal-to-noise ratio (SNR) circumstances.

Algorithms↗
PubMed2015

Evolutionary genomics of Culex pipiens: global and local adaptations associated with climate, life-history traits and anthropogenic factors.

We present the first genome-wide study of recent evolution in Culex pipiens species complex focusing on the genomic extent, functional targets and likely causes of global and local adaptations. We resequenced pooled samples of six populations of C. pipiens and two populations of the outgroup Culex torrentium. We used principal component analysis to systematically study differential natural selection across populations and developed a phylogenetic scanning method to analyse admixture without haplotype data. We found evidence for the prominent role of geographical distribution in shaping population structure and specifying patterns of genomic selection. Multiple adaptive events, involving genes implicated with autogeny, diapause and insecticide resistance were limited to specific populations. We estimate that about 5-20% of the genes (including several histone genes) and almost half of the annotated pathways were undergoing selective sweeps in each population. The high occurrence of sweeps in non-genic regions and in chromatin remodelling genes indicated the adaptive importance of gene expression changes. We hypothesize that global adaptive processes in the C. pipiens complex are potentially associated with South to North range expansion, requiring adjustments in chromatin conformation. Strong local signature of adaptation and emergence of hybrid bridge vectors necessitate genomic assessment of populations before specifying control agents.

Adaptation, Biological↗
PubMed2004

Parasite dose, prevalence of infection and local adaptation in a host-parasite system.

Parasites have been found to be more infective to sympatric hosts (local adaptation) in some systems but not in others. The variable nature of results might arise due to differences in host and/or parasite migration rates, parasite virulence, specificity of infection, and to differences in the dose-response functions. We tested this latter possibility by manipulating the dose of trematode (Microphallus sp.) eggs on sympatric and allopatric host populations (Potamopyrgus antipodarum). We found that infection rapidly increased to a high asymptote (0.88 +/- 0.02, 1 S.E.) in the sympatric host population, but infections were low and surprisingly unrelated to dose in the allopatric host. We also found that host survival and growth rate were not negatively affected by increasing parasite dose in either population. These results suggest that defences in the allopatric host were not overwhelmed at high parasite doses, and that any life-history costs of defence are not plastic responses to parasite dose.

Adaptation, Biological↗
PubMed1999

The effects of density dependence and immigration on local adaptation and niche evolution in a black-hole sink environment.

We examine the effects of density dependence and immigration on local adaptation in a "black-hole sink" habitat, i.e., a habitat in which isolated populations of a species would tend to extinction but where a population is demographically maintained by recurrent one-way migration from a separate source habitat in which the species persists. Using a diploid, one-locus model of a discrete-generation sink population maintained by immigration from a fixed source population, we show that a locally favored allele will spread when rare in the sink if the absolute fitness (or, in some cases, the geometric-mean absolute fitness) of heterozygotes with the favored allele is above one in the sink habitat. With density dependence, the criterion for spread can depend on the rate of immigration, because immigration affects local densities and, hence, absolute fitness. Given the successful establishment of a locally favored allele, it will be maintained by a migration-selection balance and the resulting polymorphic population will be sustained deterministically with either stable or unstable dynamics. The densities of stable polymorphic populations tend to exceed densities that would be maintained in the absence of the favored allele. With strong density regulation, spread of the favored allele may destabilize population dynamics. Our analyses show that polymorphic populations which form subsequent to the establishment of favorable alleles have the capacity to persist deterministically without immigration. Finally, we examined the probabilistic rate at which new favored alleles arise and become established in a sink population. Our results suggest that favored alleles are established most readily at intermediate levels of immigration.

Animals↗
PubMed2006

Expression profiling and local adaptation of Boechera holboellii populations for water use efficiency across a naturally occurring water stress gradient.

We studied the physiological basis of local adaptation to drought in Boechera holboellii, a perennial relative of Arabidopsis thaliana, and used cDNA-AFLPs to identify candidate genes showing differential expression in these populations. We compared two populations of B. holboellii from contrasting water environments in a reciprocal transplant experiment, as well as in a laboratory dry-down experiment. We continuously measured the water content of soils using time domain reflectometery (TDR). We compared populations for their water use efficiency (WUE), root/shoot ratios (R:S) and leaf mass per unit area (LMA) in the field and in the laboratory, and identified candidate genes that (i) responded plastically to water stress and (ii) were differentially expressed between the two populations. Genotypes from the drier site had higher WUE, which was attributable to a large reduction in transpirational water loss. The xeric-adapted population also had increased investment in root biomass and greater leaf mass per unit area. Reciprocal transplants in the field had significantly greater survival in their native habitat. In total, 450 cDNA-AFLP fragments showed significant changes between drought and control treatments. Furthermore, some genes showed genotype (population)-specific patterns of up- or down-regulation in response to drought. Three hundred cDNA-AFLP bands were sequenced leading to the identification of cDNAs coding for proteins involved in signal transduction, transcriptional regulation, redox regulation, oxidative stress and pathways involved in stress adaptation. Some of these proteins could contribute a physiological advantage under drought, making them potential targets for natural selection.

Brassicaceae↗