Shape modelling of fruit by image processing.
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Food Handling↗
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Conservation of gene function in the solanaceae as revealed by comparative mapping of domestication traits in eggplant.
Quantitative trait loci (QTL) for domestication-related traits were identified in an interspecific F(2) population of eggplant (Solanum linnaeanum x S. melongena). Although 62 quantitative trait loci (QTL) were identified in two locations, most of the dramatic phenotypic differences in fruit weight, shape, color, and plant prickliness that distinguish cultivated eggplant from its wild relative could be attributed to six loci with major effects. Comparison of the genomic locations of the eggplant fruit weight, fruit shape, and color QTL with the positions of similar loci in tomato, potato, and pepper revealed that 40% of the different loci have putative orthologous counterparts in at least one of these other crop species. Overall, the results suggest that domestication of the Solanaceae has been driven by mutations in a very limited number of target loci with major phenotypic effects, that selection pressures were exerted on the same loci despite the crops' independent domestications on different continents, and that the morphological diversity of these four crops can be explained by divergent mutations at these loci.
Chromosome Mapping↗
Object familiarity affects finger shaping during grasping of fruit stalks.
In experiment 1 participants reached and grasped equal green stalks of a green apple and a red strawberry. Stability of the two fruits was equalized by fixing the fruits on the table plane where they were reached for and grasped. The results confirmed that finger shaping was influenced by the size of the fruit body (Gentilucci 2002). Finger shaping was larger when grasping the apple stalk than the strawberry stalk. In addition, deceleration phase lengthened when reaching to grasp the strawberry stalk. In experiment 2 participants reached for and grasped equal wooden matches substituting the stalks of the same apple and strawberry presented in experiment 1. No effect of the fruit body was observed on grasping and reaching the matches. This result excluded that the closeness of the stalk to the fruit body was responsible for the interference effect observed in experiment 1. In experiment 3 participants reached for and grasped equal green stalks of an apple and a strawberry of the same red colour. The same results as in experiment 1 were found. They excluded that a grouping effect due to the same green colour of the stalk and the apple body was responsible for the interference effect observed in experiment 1. Results are discussed as further support of the hypothesis that an object is globally analysed when interacting with it, and familiarity, i.e. the way by which a familiar object is commonly grasped, strongly influences all the other possible interactions with it.
Adult↗
MDH1: an apple homeobox gene belonging to the BEL1 family.
Differential display was used to isolate genes differentially expressed early in fruit development of apple (Malus domestica Borkh.). This approach resulted in the isolation of MDH1, a homeobox gene with a homeodomain similar to that of BELL1 (BEL1), which is involved in regulation of ovule development in Arabidopsis. However, outside the homeodomain MDH1 is quite different from BEL1. In apple, MDH1 mRNA was predominantly found in flowers, expanding leaves and expanding fruit. In pre-anthesis flowers, in situ hybridization showed that MDH1 mRNA accumulated in ovules. To further investigate the function of this new homeobox gene, MDH1 was transformed into Arabidopsis thaliana under the control of the cauliflower mosaic virus 35S promoter. The transgenic Arabidopsis plants showed dwarfing, reduced fertility and changes in carpel and fruit (silique) shape. The size and shape of the cells in the transgenic fruit was irregular. Both the transgenic phenotypes in Arabidopsis and the expression pattern of this gene in apple are consistent with the idea that MDH1 is likely to play an important role in control of plant fertility.
Amino Acid Sequence↗
Concerted regulation of all hyphal tips generates fungal fruit body structures: experiments with computer visualizations produced by a new mathematical model of hyphal growth.
Filamentous hyphal growth is inherently suited to kinetic analysis, and in many respects the fungal mycelium can be viewed as a very mechanical biological system, which lends itself to mathematical modelling. The mathematics of hyphal tip extension growth are well-established. However, even though a hyphal growth equation can be written with confidence, and we have a good understanding of the effects of tropisms on growth, it is not easy to form a mental picture of the behaviour of large populations of hyphal tips. What is required, and what we believe we have produced, is a mathematical model that is sufficiently sophisticated to produce a realistic visualization of fungal hyphal growth. This provides us with a cyberfungus that can be used for experimentation on the theoretical rules that might govern hyphal patterning, hyphal interactions, and tissue formation and organ development by actually visualizing the virtual hyphal growth patterns that result from different regulatory scenarios. From a series of model experiments the most significant observation is that complex fungal fruit body shapes can be simulated by applying the same regulatory functions to all of the growth points active in a structure at any specific time. No global control of fruit body geometry is necessary. No localized regulation is necessary. The shape of the fruit body emerges from the concerted response of the entire population of hyphal tips, in the same way, to the same signals.
Computer Graphics↗
Mapping of yield-related QTLs in pepper in an interspecific cross of Capsicum annuum and C. frutescens.
An advanced backcross QTL study was performed in pepper using a cross between the cultivated species Capsicum annuum cv. Maor and the wild C. frutescens BG 2816 accession. A genetic map from this cross was constructed, based on 248 BC(2) plants and 92 restriction fragment length polymorphism (RFLP) markers distributed throughout the genome. Ten yield-related traits were analyzed in the BC(2) and BC(2)S(1) generations, and a total of 58 quantitative trait loci (QTLs) were detected; the number of QTLs per trait ranged from two to ten. Most of the QTLs were found in 11 clusters, in which similar QTL positions were identified for multiple traits. Unlike the high percentage of favorable QTL alleles discovered in wild species of tomato and rice, only a few such QTL alleles were detected in BG 2816. For six QTLs (10%), alleles with effects opposite to those expected from the phenotype were detected in the wild species. The use of common RFLP markers in the pepper and tomato maps enabled possible orthologous QTLs in the two species to be determined. The degree of putative QTL orthology for the two main fruit morphology traits-weight and shape-varied considerably. While all eight QTLs identified for fruit weight in this study could be orthologous to tomato fruit weight QTLs, only one out of six fruit shape QTLs found in this study could be orthologous to tomato fruit shape QTLs.
Capsicum↗
Combining and comparing morphometric shape descriptors with a molecular phylogeny: the case of fruit type evolution in Bornean Lithocarpus (Fagaceae).
Fruit type in the genus Lithocarpus (Fagaceae) includes both classic oak acorns and novel modifications. Bornean taxa with modified fruits can be separated into two sections (Synaedrys and Lithocarpus) based on subtle shape differences. By following strict criteria for homology and representation, this variation in shape can be captured and the sections distinguished by using elliptic Fourier or eigenshape analysis. Phenograms of fruit shape, constructed by using restricted maximum likelihood techniques and these morphometric descriptors, were incorporated into combined and comparative analyses with molecular sequence data from the internal transcribed spacer (ITS) region of the nuclear rDNA, using branch-weighted matrix representation. The combined analysis strongly suggested independent derivation of the novel fruit type in the two sections from different acornlike ancestors, while the comparative analysis indicated frequent decoupling between the molecular and morphological changes as inferred at well-supported nodes. The acorn fruit type has undergone little modification between ingroup and outgroup, despite large molecular distance. Greater morphological than molecular change was inferred at critical transitions between acorn and novel fruit types, particularly for section Lithocarpus. The combination of these two different types of data improved our understanding of the macroevolution of fruit type in this difficult group, and the comparative analysis highlighted the significant incongruities in evolutionary pattern between the two datasets.
Borneo↗
A link between cell movement and gene expression argues that motility is required for cell-cell signaling during fruiting body development.
Nonmotile mutants of Myxococcus xanthus (Myxobacterales) failed to execute the morphogenetic movements required to shape a fruiting body. In addition, nonmotile mutants produced very few spores when plated for fruiting body development at cell densities appropriate for wild-type cells. At higher initial cell densities, the proportion of nonmotile cells that sporulate increased, indicating that one important function of motility in fruiting body development is to increase the local cell density. However, even at 10 times normal cell density, nonmotile cells sporulated at only 1% the wild-type level. This sporulation deficiency of nonmotile mutants accompanies an altered pattern of gene expression, monitored by using transcriptional fusions of lacZ to genes expressed at specific times during fruiting body development. Motility was not required for normal expression of five lac fusions that are expressed within the first 6 hr of fruiting-body development. However, the levels of expression from five lac fusions to later-expressed genes were reduced or abolished in nonmotile strains. beta-Galactosidase expression in these late Tn5 lac insertions was increased, and fruiting body development occurred in certain nonmotile strains that can be stimulated to move when mixed with a donor strain. This shows that motility itself is required because the stimulated cells are nonmotile genotypically. The nonmotile mutations had the same effect on developmental beta-galactosidase expression from these 10 lac fusions as an insertion mutation in the csg (formerly spoC) gene. csg mutants have a cell-cell interaction defect that blocks fruiting body development at approximately 6 hr. The similarity in the pattern of developmental expression of motility mutants and csg mutants suggests that motility is required for this csg-mediated cell-cell interaction.
Cell Movement↗
Phylogenetic relationships of cyphelloid homobasidiomycetes.
The homobasidiomycetes includes the mushroom-forming fungi. Members of the homobasidiomycetes produce the largest, most complex fruiting bodies in the fungi, such as gilled mushrooms ("agarics"), boletes, polypores, and puffballs. The homobasidiomycetes also includes species that produce minute, cup- or tube-shaped "cyphelloid" fruiting bodies, that rarely exceed 1-2 mm diameter. The goal of this study was to estimate the phylogenetic placements of cyphelloid fungi within the homobasidiomycetes. Sequences from the nuclear large subunit (nuc-lsu) ribosomal DNA (rDNA), 5.8S rDNA, and internal transcribed spacers (ITS) 1 and 2 were obtained for 31 samples of cyphelloid fungi and 16 samples of other homobasidiomycetes, and combined with published sequences. In total, 71 sequences of cyphelloid fungi were included, representing 16 genera. Preliminary phylogenetic analyses of a 1477-sequence data set and BLAST searches using sequences of cyphelloid forms as queries were used to identify taxa that could be close relatives of cyphelloid forms. Subsequent phylogenetic analyses of one data set with 209 samples represented by nuc-lsu rDNA sequences (analyzed with parsimony) and another with 38 samples represented by nuc-lsu and 5.8S rDNA sequences (analyzed with parsimony and maximum likelihood) indicated that cyphelloid forms represent a polyphyletic assemblage of reduced agarics (euagarics clade, Agaricales). Unconstrained tree topologies suggest that there have been about 10-12 origins of cyphelloid forms, but evaluation of constrained topologies with the Shimodaira-Hasegawa test suggests that somewhat more parsimonious scenarios cannot be rejected. Whatever their number, the multiple independent origins of cyphelloid forms represent striking cases of parallel evolutionary reduction of complex fungal morphology.
Animals↗
Cell growth and morphology of Dictyostelium discoideum in space environment.
Two strains of cellular slime mold Dictyostelium discoideum, a radiation-sensitive mutant and the parental wild-type strain, were used to investigate the effects of microgravity and/or cosmic radiation on their morphology through the whole life span from spores to fruiting bodies for about 7 days in space shuttle of NASA. We found almost no effect of space environment on amoeba cell growth in both strains. It was also observed that almost the same number and shape of fruiting bodies in space compared to the control experiments on earth. These results suggest that there is little effect of microgravity and space radiation on germination, cell aggregation, cell differentiation and cell morphology in the cellular slime mold.
Animals↗
Signaling in myxobacteria.
Myxobacteria use soluble and cell-contact signals during their starvation-induced formation of fruiting bodies. These signals coordinate developmental gene expression with the cell movements that build fruiting bodies. Early in development, the quorum-sensing A-signal in Myxococcus xanthus helps to assess starvation and induce the first stage of aggregation. Later, the morphogenetic C-signal helps to pattern cell movement and shape the fruiting body. C-signal is a 17-kDa cell surface protein that signals by contact between the ends of two cells. The number of C-signal molecules per cell rises 100-fold from the beginning of fruiting body development to the end, when spores are formed. Traveling waves, streams, and sporulation have increasing thresholds for C-signal activity, and this progression ensures that spores form inside fruiting bodies.
Myxococcus xanthus↗
Diallel analysis of production traits among domestic, exotic and mutant germplasms of Lycopersicon.
The effects of wild germplasm on tomato fruit shelf life have not yet been completely evaluated. Three different genotypes of Lycopersicon esculentum (a cultivated variety, a homozygote for nor and a homozygote for rin), LA1385 of L. esculentum var. cerasiforme, LA722 of L. pimpinellifolium, and 10 diallel hybrids were assayed. Mean values of fruit shelf life, weight, shape, and mean number of flowers per cluster were analyzed after Griffing (1956, Aust. J. Biology 9: 463-493), method 2, model 1. Both general and specific combining abilities (GCA and SCA) were significant for the four traits. Negative unidirectional dominance was detected for fruit weight and shelf life, while bidirectional dominance was detected for fruit shape and mean number of flowers per cluster. SCA was greater than GCA for shelf life, so nonadditive effects predominantly accounted for this trait. In the heterozygous state, rin had smaller mean effects than nor. Wild accessions were able to prolong shelf life per se, and in crosses to the cultivated variety. The cross between the homozygote for nor and LA722 yielded the longest shelf life among hybrids.
Crosses, Genetic↗
The role of taste in food selection by African apes: implications for niche separation and overlap in tropical forests.
Ripe fruit eating shapes the behavior of most of the apes. Gorillas (Gorilla gorilla) and chimpanzees (Pan troglodytes) are very different sizes and, consequently, have been traditionally viewed as ecologically distinct, but few studies have explored the behavioral and physiological foundations of their diets. Debate continues on the extent that large-bodied gorillas may be less selective and more opportunistic fruit eaters than chimpanzees. Taste responses have been predicted to relate to body size and digestive strategies. This study employs laboratory research on taste perception and discrimination among captive zoo-housed chimpanzees and relates it to previous work on gorillas to better characterize diets and niche separation among these apes. During the captive trials, differences were recorded in consumption patterns of water and varying concentrations of dilute aqueous fructose (sweet) and tannic acid solutions (astringent), compounds commonly found in wild foods. The chimpanzees exhibited similar preference thresholds for fructose (50 mM) to other primates studied. They exhibited slightly lower inhibition thresholds for tannic acid solutions than gorillas, but higher than smaller primates studied to date. These preliminary findings suggest that tannin tolerance may well be mediated by body size, though possible species differences in salivary proteins or other sensory differences remain to be explored. This research furthers our efforts to understand the roles of body size and physiological adaptations in shaping diet and niche separation of chimpanzees and gorillas.
Animals↗
Color scaling of discs and natural objects at different luminance levels.
Assigning a basic color name to an object and rating the amount of a particular hue is a fundamental visual capability. Traditional color scaling studies have used increment flashes or isoluminant stimuli of a homogeneous color. Natural objects, however, do not contain a single color but are characterized by a distribution of different chromatic hues. Here we study color scaling using photographs of natural fruit objects. Stimuli were either homogeneous spots, digital photographs of fruit objects (e.g., banana), or outline shapes of the fruit objects. Stimuli were displayed on a CRT monitor on a homogeneous white background; its luminance was varied above and below the medium gray. The chromaticity of the stimuli was varied in 36 equally spaced chromatic directions in the isoluminant plane of the Derrington-Krauskopf-Lennie (DKL) color space. For each stimuli, subjects rated the amount of red, green, blue, and yellow in the stimulus on a scale from 0-8. In agreement with earlier studies we found that the positions of the peak ratings for each color do not coincide with the cardinal axis of DKL color space and are largely invariant under changes of the background luminance. For the average rating we found a dependence on background luminance for all colors: yellow ratings increase with darker backgrounds, whereas ratings for the other colors, in particular green, decrease. For the fruit objects, we found a selective increase in the average color rating for the natural fruit color. For example, the average rating for yellow was 1.7 times higher for the banana images compared to disc stimuli. No such selective increase was found for outline shapes. We conclude that the distribution of hues in natural objects with a characteristic object color can have a profound effect on color scaling and color appearance.
Adaptation, Ocular↗
Western lowland gorillas (Gorilla gorilla gorilla) as seasonal frugivores: use of variable resources.
The gorillas studied at Bai Hokou, Central African Republic, between August 1990 and October 1992 consumed 239 kinds of foods from 138 species of plants and invertebrates, including the fruits of 77 species. Seeds were present in 99% of all fecal samples (n = 859). Although gorillas ate fleshy fruit whenever it was available, herbaceous plants and fibrous fruits were consumed year-round and were important during times of fleshy fruit scarcity. At Bai Hokou and across their range, resources are temporally discontinuous, and western gorilla diet exhibits marked seasonal and interannual variation. Although their large body size lends them dietary flexibility relative to chimpanzees, seasonal fruit-eating shapes the foraging and ranging patterns of western lowland gorillas.
Animals↗
About the equilibrium shape of fibred structures, and biological shapes.
Biological morphogenesis has often been modeled with reaction-diffusion models [A.M. Turing, The chemical basis of morphogenesis, Phil. Trans. R. Soc. Lond. B 237 (1952) 37-72]. The interplay of bio-chemical fields is supposed to generate shapes by positional information carried by the values in the field. However, the structure of the biological tissue at the microscopic scale is absent from these models. We show that the fibred nature of biological tissue induces specific morphogenic properties. Fibred shapes can be calculated from physical principles borrowed from the theory of crystallogenesis. These give an intuitive insight into the shape of fruits or vegetables, buds and pins in botany, fingers, muscles, insects abdomen and heart in the animal realm, and also into other fibred structures such as the mitotic spindle. We predict the existence of bumps, apices or cusps at poles of fibred structures. An extrapolation to out-of-equilibrium growth predicts that these structures grow forward in the direction of the cusp, and that fibred organs should have a regular branching ordering. However, our model does not take into account the elasto-plastic properties, or the composite nature of the living material.
Biophysical Phenomena↗
Simulating colonial growth of fungi with the Neighbour-Sensing model of hyphal growth.
The Neighbour-Sensing model brings together the basic essentials of hyphal growth kinetics into a vector-based mathematical model in which the growth vector of each virtual hyphal tip is calculated by reference to the surrounding virtual mycelium. The model predicts the growth pattern of many hyphae into three spatial dimensions and has been used to simulate complex fungal fruit body shapes. In this paper we show how the Neighbour-Sensing model can simulate growth in semi-solid substrata like agar or soil, enabling realistic simulation of mycelial colonies of filamentous fungi grown in 'Petri-dish style' experimental conditions. Newly implemented capabilities in the model include: a measurement and logging system within the program that maintains basic statistics about the mycelium it is simulating, this facilitates kinetic experimentation; inclusion of 'substrates' in the data space causing positive or negative tropisms for the growing mycelium; a horizontal plane tropism that provides a way of simulating colonies growing in or on a substratum like agar or soil by imposing a horizontal constraint on the data space the cyberhyphal tips can explore; three categories of hypha--standard hyphae are those that start the simulation, leading hyphae can emerge from the colony peripheral growth zone to take on a leading role, and secondary hyphae are branches that can arise late, far behind the peripheral growth zone, when mature hyphal segments resume branching to in-fill the older parts of the colony. We show how the model can be used to investigate hyphal growth kinetics in silico in experimental scenarios that would be difficult or impracticable in vivo. We also show that the Neighbour-Sensing model can generate sufficiently realistic cord-like structures to encourage the belief that this model is now sufficiently advanced for parameters to be defined that simulate specific in silico cyberfungi. The potential utility of these cyberspecies is that they provide a means to model the morphogenetic effects of a variety of factors, from environmental and nutritional features to mutations, in experimentally realistic situations, offering a valuable addition to the experimental toolkit of all those interested in fungal growth and morphology.
Computer Graphics↗
GROWTH STUDIES ON FRUITS AN EXPLANATION OF THE SHAPE OF THE GROWTH CURVE.
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Journal Article↗