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At least 523 records · Page 29Linked to original sources
PubMed2005

Discrete breathers in Fermi-Pasta-Ulam lattices.

We study the properties of spatially localized and time-periodic excitations--discrete breathers--in Fermi-Pasta-Ulam (FPU) chains. We provide a detailed analysis of their spatial profiles and stability properties. We especially demonstrate that the Page mode is linearly stable for symmetric FPU potentials. A resonant interaction between a localized and delocalized perturbations causes weak but finite strength instabilities for asymmetric FPU potentials. This interaction induces Fano resonances for plane waves scattered by the breather. Finally we analyze the interplay between energy thresholds for breathers in the presence of strongly asymmetric FPU potentials and the corresponding profiles of the low-frequency limit of breather families.

Journal Article↗
PubMed2001

Reproductive performance links to fine-scale spatial patterns of female grey seal relatedness.

Fine-scale spatial patterns of female relatedness throughout the established grey seal breeding colony of North Rona, Scotland, were investigated by accurate mapping and spatially explicit analyses of a large sample (n = 262) of mothers using variation at nine microsatellite DNA loci. Local spatial autocorrelation analyses identified locations where seals were more highly related to the colony than average. These locations were also areas where the more successful females bred, were occupied first during each breeding season, were centrally placed locations of preferred habitat types and were likely to be the locations which were the first to be colonized historically. Mothers occupying such sites achieved higher than average pup growth rates, suggesting a founder fitness benefit.

Animals↗
PubMed2000

Observation of breathers in Josephson ladders.

We report on the observation of spatially localized excitations in a ladder of small Josephson junctions. The excitations are whirling states which persist under a spatially homogeneous force due to the bias current. These states of the ladder are visualized using a low temperature scanning laser microscopy. We also compute breather solutions with high accuracy in corresponding model equations. The stability analysis of these solutions is used to interpret the measured patterns in the I-V characteristics.

Journal Article↗
PubMed1998

Motion analysis by feature tracking.

We have developed a two-stage model of motion perception that identifies moving spatial features and computes their velocity, achieving both high spatial localisation and reliable estimates of velocity. Features are detected in each frame by locating the peaks of the spatial local energy functions, as for stationary images (Morrone MC and Burr DC. Proc R Soc Lond 1988;B235:221-245.). The energy functions are calculated for different scales and orientations, and integrated within a temporal Gaussian window. The velocity of features is determined by the direction of maximal elongation of the energy in space-time, evaluated by calculating the three characteristic curvatures of the energy at each feature point. To circumvent the aperture problem, the energy maps are blurred in space by various amounts, and velocity is computed separately for each spatial blur. The Weber fraction of the local curvatures (curvature contrast) describes the spatio-temporal energy elongation at each feature point, giving a reliability index for each velocity estimate. For each point, the velocity of the spatial blur that yielded the highest curvature contrast was selected, with no further constraints, such as rigidity of motion. Dynamic recruitment of operators of different size allows maximum flexibility of the analysis, allowing it to simulate human visual performance in the detection of noise images, transparent motion, some motion illusions, and second-order motion.

Algorithms↗
PubMed2006

Spatio-temporal dynamics of alternative male phenotypes in coho salmon populations in response to ocean environment.

1. The coexistence of alternative reproductive phenotypes will probably be shaped by spatial and temporal variability in the environment. However, the effects of such variability on coexistence and the scale at which it operates are seldom understood. 2. To quantify such effects, we examined spatial and temporal dynamics in the abundance and frequency of alternative phenotypes of male coho salmon, Oncorhynchus kisutch Walbaum, which mature as either large fighters (age-3 'hooknoses') or small sneakers (age-2 'jacks'). Using over 20 years of data on coded-wire tagged fish released from nine Oregon hatcheries, we tested for the effects of ocean environment independent of those due to freshwater rearing. 3. Annual fluctuations of the abundance of jack and hooknose males within populations were correlated strongly by brood year (cohort) but not by return year (breeding group). This occurred independently of significant effects of release practice (i.e. the number of fish released, body size at release and date of release), indicating that a synchronized fluctuation in mortality during the first year at sea was the predominant cause. As a result, the annual frequency of the alternative phenotypes at breeding varied considerably within populations. 4. Spatial patterns in the annual fluctuations of the two phenotypes were similar (i.e. synchronous among populations), except that jacks showed local spatial structure (decreased synchrony with distance) not evident among hooknoses. This suggests that oceanic processes affecting the two phenotypes operate at different spatial scales. Despite effects on salmon abundance, the ocean environment had little influence through its effects on salmon growth on the relative frequencies of the alternative phenotypes within and among populations. 5. The results provide insight into the evolutionary dynamics of alternative phenotypes, including an intragenerational time lag that increases annual variability in phenotype frequencies at breeding (return years) and the significance of local freshwater processes, rather than oceanic processes, on phenotype expression. Freshwater processes, such as juvenile growth, timing of migration and breeding competition, operating at evolutionary and intragenerational time-scales, are probably the predominant forces affecting phenotype frequency.

Aging↗
PubMed1999

Expression and localization of the proteoglycan decorin during the progression of cholesterol induced atherosclerosis in Japanese quail: implications for interaction with collagen type I and lipoproteins.

The temporal and spatial distribution, and relative levels of the proteoglycan decorin and collagen type I were examined during the progression of atherosclerosis in the dorsal aortas of Japanese quail selected for cholesterol induced atherosclerosis. The quail were placed on either a control or 0.5% added cholesterol diet at approximately 16 weeks of age. Dorsal aortas were collected at 1- or 2-week intervals over a 15-week period after initiating cholesterol feeding. Biochemical analysis for decorin and collagen type I showed that both increased in the cholesterol-fed birds compared to control-fed birds beginning at 9 weeks and continued through the duration of the study. Through immunohistochemical staining for decorin and collagen type I, the spatial localization of decorin and collagen type I in control and less severe plaques in cholesterol-fed birds was most prominent in the arterial adventitia. However, in severe atherosclerotic plaques, decorin was localized in foam cell regions and collagen type I was found surrounding the foam cell regions where decorin accumulated. These results demonstrated a localization of decorin in the core of the atherosclerotic plaque foam cell region with collagen type I being located on the plaque surface.

Animals↗
PubMed2006

Endogenous driving and synchronization in cardiac and uterine virtual tissues: bifurcations and local coupling.

Cardiac and uterine muscle cells and tissue can be either autorhythmic or excitable. These behaviours exchange stability at bifurcations produced by changes in parameters, which if spatially localized can produce an ectopic pacemaking focus. The effects of these parameters on cell dynamics have been identified and quantified using continuation algorithms and by numerical solutions of virtual cells. The ability of a compact pacemaker to drive the surrounding excitable tissues depends on both the size of the pacemaker and the strength of electrotonic coupling between cells within, between, and outside the pacemaking region. We investigate an ectopic pacemaker surrounded by normal excitable tissue. Cell-cell coupling is simulated by the diffusion coefficient for voltage. For uniformly coupled tissues, the behaviour of the hybrid tissue can take one of the three forms: (i) the surrounding tissue electrotonically suppresses the pacemaker; (ii) depressed rate oscillatory activity in the pacemaker but no propagation; and (iii) pacemaker driving propagations into the excitable region. However, real tissues are heterogeneous with spatial changes in cell-cell coupling. In the gravid uterus during early pregnancy, cells are weakly coupled, with the cell-cell coupling increasing during late pregnancy, allowing synchronous contractions during labour. These effects are investigated for a caricature uterine tissue by allowing both excitability and diffusion coefficient to vary stochastically with space, and for cardiac tissues by spatial gradients in the diffusion coefficient.

Action Potentials↗
PubMed2003

Simulation study of localization of electromagnetic waves in two-dimensional random dipolar systems.

We study the propagation and scattering of electromagnetic waves by random arrays of dipolar cylinders in a uniform medium. A set of self-consistent equations, incorporating all orders of multiple scattering of the electromagnetic waves, is derived from first principles and then solved numerically for electromagnetic fields. For certain ranges of frequencies, spatially localized electromagnetic waves appear in such a simple but realistic disordered system. Dependence of localization on the frequency, radiation damping, and filling factor is shown. The spatial behavior of the total, coherent, and diffusive waves is explored in detail, and found to comply with a physical intuitive picture. A phase diagram characterizing localization is presented, in agreement with previous investigations on other systems.

Journal Article↗
PubMed2003

Preserved performance in a hippocampal-dependent spatial task despite complete place cell remapping.

The spatially localized firing of hippocampal place cells is thought to underlie the navigational function of the hippocampus. Performance on a spatial task learned using a particular place cell map should therefore deteriorate if the map is disrupted. To test this prediction, we trained rats on a hippocampal-dependent spatial task in a black box and tested them in a white box. Although the change from black to white induced remapping of most place cells, navigational performance remained essentially intact. Furthermore, place cell activity was also unrelated to specific aspects of the task such as tone onset, response, or goal location. Together, these results imply that the spatial information needed to solve this navigation task is represented outside the hippocampus and suggest that the place cells encode some other aspect, such as the spatial context.

Animals↗
PubMed2005

Background-activity-dependent properties of a network model for working memory that incorporates cellular bistability.

In models of working memory, transient stimuli are encoded by feature-selective persistent neural activity. Network models of working memory are also implicitly bistable. In the absence of a brief stimulus, only spontaneous, low-level, and presumably nonpatterned neural activity is seen. In many working-memory models, local recurrent excitation combined with long-range inhibition (Mexican hat coupling) can result in a network-induced, spatially localized persistent activity or "bump state" that coexists with a stable uniform state. There is now renewed interest in the concept that individual neurons might have some intrinsic ability to sustain persistent activity without recurrent network interactions. A recent visuospatial working-memory model (Camperi and Wang 1998) incorporates both intrinsic bistability of individual neurons within a firing rate network model and a single population of neurons on a ring with lateral inhibitory coupling. We have explored this model in more detail and have characterized the response properties with changes in background synaptic input I(o) and stimulus width. We find that only a small range of I(o) yields a working-memory-like coexistence of bump and uniform solutions that are both stable. There is a rather larger range where only the bump solution is stable that might correspond instead to a feature-selective long-term memory. Such a network therefore requires careful tuning to exhibit working-memory-like function. Interestingly, where bumps and uniform stable states coexist, we find a continuous family of stable bumps representing stimulus width. Thus, in the range of parameters corresponding to working memory, the model is capable of capturing a two-parameter family of stimulus features including both orientation and width.

Action Potentials↗
PubMed1993

The Drosophila rhomboid gene mediates the localized formation of wing veins and interacts genetically with components of the EGF-R signaling pathway.

The rhomboid (rho) gene, which encodes a transmembrane protein, is a member of a small group of genes (ventrolateral genes) required for the differentiation of ventral epidermis in the Drosophila embryo. The ventrolateral genes include spitz, which encodes an EGF-like ligand, and Star. The receptor for spitz may be the gene encoding the Drosophila epidermal growth factor-receptor (Egf-r) because the phenotype resulting from partial loss of function of Egf-r is similar to that of ventrolateral group mutants. Among ventrolateral genes encoding cell-surface or secreted proteins, rho is the only member expressed in a localized pattern corresponding to cells requiring the activity of the ventrolateral pathway. In this paper we provide evidence that spatial localization of rho plays an analogous role in establishing vein pattern in the adult wing. rho is expressed in early wing disc cells likely to be wing vein primordia and later is sharply restricted to developing veins. Flies homozygous for the viable rho(ve) allele have missing veins and rho fails to be expressed in rho(ve) mutant wing discs. Ectopic expression of rho during wing development leads to the formation of extra veins. Gene dosage studies among ventrolateral genes suggest that the rho product (Rho) may facilitate Spi-EGF-R signaling, resulting in activation of RAS. We discuss models for how localized expression of Rho may amplify signaling mediated by ubiquitously distributed ligand and receptor components.

Animals↗
PubMed2005

Collisionless reconnection in an electron-positron plasma.

Electromagnetic particle-in-cell simulations of fast collisionless reconnection in a two-dimensional electron-positron plasma (without an equilibrium guide field) are presented. A generalized Ohm's law in which the Hall current cancels out exactly is given. It is suggested that the key to fast reconnection in this plasma is the localization caused by the off-diagonal components of the pressure tensors, which produce an effect analogous to a spatially localized resistivity.

Journal Article↗
PubMed2004

Spatial patterns of urinary schistosomiasis infection in a highly endemic area of coastal Kenya.

Urinary schistosomiasis remains a major contributor to the disease burden along the southern coast of Kenya. Selective identification of transmission hot spots offers the potential for more effective, highly-focal snail control and human chemotherapy to reduce Schistosoma haematobium transmission. In the present study, a geographic information system was used to integrate demographic, parasitologic, and household location data for an endemic village and neighboring households with the biotic, abiotic, and location data for snail collection/water contact sites. A global spatial statistic was used to detect area-wide trends of clustering for human infection at the household level. Local spatial statistics were then applied to detect specific household clusters of infection, and, as a focal spatial statistic, to evaluate clustering of infection around a putative transmission site. High infection intensities were clustered significantly around a water contact site with high numbers of snails shedding S. haematobium cercariae. When age was considered, clustering was found to be significant at different distances for different age groups.

Adolescent↗
PubMed2006

Intracellular localization of matrix metalloproteinases and their inhibitors in cultured tumor cell lines: flow cytometric analysis.

Coordinate cell-surface expression of matrix metalloproteinases (MMPs) and their inhibitors (TIMPs) on cancer cells, tumor-infiltrating lymphocytes (TIL) and cancer-associated myofibroblasts has been shown to play an important role in tumor invasion and metastasis in organ tissues. However, precise localization of tumor cell lines in vitro has remained obscure. The aim of this study was to investigate the spatial localization of these proteolytic enzymes in 21 tumor cell lines consisting of 8 gastric, 4 pancreatic, 2 gallbladder, 1 extrahepatic bile duct cancer and 6 T- or B-cell tumors. The cell-surface and/or intracellular localization of MMP-2, -7, and -9, membrane type-1 (MT1)-MMP and TIMP-2 and -4 was quantitatively determined by flow cytometry in living (non-permeabilized) and permeabilized tumor cell lines. As a result, all of the tumor cell lines showed a high level of intracellular expression, but a low or undetectable level of cell-surface expression of MMPs and TIMPs. The findings revealed that intracellular MMPs and TIMPs in tumor cell lines were preserved as latent pro-enzymes.

Cell Line, Tumor↗
PubMed2003

Trafficking and activation of eNOS in epithelial cells.

In mammalian cells, formation of nitric oxide (NO) is catalysed by a family of enzymes termed NO synthases (NOS). There are three isoforms of this enzyme, NOS I, II and III. NOS III was originally cloned and identified in endothelial cells; thus this isoform is commonly called endothelial NOS (eNOS). The physiological role of NO produced by eNOS has been documented in most organs, including the brain, lung, cardiovascular system, kidney, liver, gastrointestinal tract and reproductive organs. The bioavailability of NO in these tissues is determined by the balance between its rate of production and degradation. The rate of NO production by eNOS is ultimately dependent on the activity of the enzyme. In the past years, co- and post-translational modifications such as myristoylation, palmitoylation, phosphorylation, protein-protein interactions and subcellular localization have been shown to play an important role in determining eNOS activity. In order to maintain specificity, the production of most signalling molecules occurs in an organized spatial and temporal pattern. Spatial localization of eNOS has been shown to be regulated by different mechanisms that control its targeting from the Golgi apparatus to the plasma membrane, correct compartmentalization within the membrane, and internalization from the plasma membrane to the cytoplasm after activation. Thus, regulated localization and trafficking of eNOS may be essential in regulating enzyme activity and maintaining the spatial and temporal organization of NO signalling in different cell types.

Cell Membrane↗
PubMed2003

A GIS model of subsurface water potential for aquatic resource inventory, assessment, and environmental management.

Biological, chemical, and physical attributes of aquatic ecosystems are often strongly influenced by groundwater sources. Nonetheless, widespread access to predictions of subsurface contributions to rivers, lakes, and wetlands at a scale useful to environmental managers is generally lacking. In this paper, we describe a "neighborhood analysis" approach for estimating topographic constraints on spatial patterns of recharge and discharge and discuss how this index has proven useful in research, management, and conservation contexts. The Michigan Rivers Inventory subsurface flux model (MRI-DARCY) used digital elevation and hydraulic conductivity inferred from mapped surficial geology to estimate spatial pattems of hydraulic potential. Model predictions were calculated in units of specific discharge (meters per day) for a 30-m-cell raster map and interpreted as an index of potential subsurface water flux (shallow groundwater and event through-flow). The model was evaluated by comparison with measurements of groundwater-related attributes at watershed, stream segment, and local spatial scales throughout Lower Michigan (USA). Map-based predictions using MRI-DARCY accounted for 85% of the observed variation in base flow from 128 USGS gauges, 69% of the observed variation in discharge accrual from 48 river segments, and 29% of the residual variation in local groundwater flux from 33 locations as measured by hyporheic temperature profiles after factoring out the effects of climate. Although it does not incorporate any information about the actual water table surface, by quantifying spatial variation of key constraints on groundwater-related attributes, the model provides strata for more intensive study, as well as a useful spatial tool for regional and local conservation planning, fisheries management, wetland characterization, and stream assessment.

Conservation of Natural Resources↗
PubMed2005

Correlated firing in a feedforward network with Mexican-hat-type connectivity.

We report on deterministic and stochastic evolutions of firing states through a feedforward neural network with Mexican-hat-type connectivity. The prevalence of columnar structures in a cortex implies spatially localized connectivity between neural pools. Although feedforward neural network models with homogeneous connectivity have been intensively studied within the context of the synfire chain, the effect of local connectivity has not yet been studied so thoroughly. When a neuron fires independently, the dynamics of macroscopic state variables (a firing rate and spatial eccentricity of a firing pattern) is deterministic from the law of large numbers. Possible stable firing states, which are derived from deterministic evolution equations, are uniform, localized, and nonfiring. The multistability of these three states is obtained where the excitatory and inhibitory interactions among neurons are balanced. When the presynapse-dependent variance in connection efficacies is incorporated into the network, the variance generates common noise. Then the evolution of the macroscopic state variables becomes stochastic, and neurons begin to fire in a correlated manner due to the common noise. The correlation structure that is generated by common noise exhibits a nontrivial bimodal distribution. The development of a firing state through neural layers does not converge to a certain fixed point but keeps on fluctuating.

Artifacts↗
PubMed2004

Attention differentially modulates the coupling of fMRI BOLD and evoked potential signal amplitudes in the human somatosensory cortex.

Blood oxygenation dependent contrast (BOLD) fMRI is used increasingly to probe "connectivity" based on temporal correlations between signals from different brain regions. This approach assumes that there is constant local coupling of neuronal activity to the associated BOLD response. Here we test the alternative hypothesis that there is not a fixed relationship between these by determining whether attention modulates apparent neurovascular coupling. Electrical stimulation of the median nerve was applied with and without a concurrent distractor task (serial subtraction). Increasing stimulation intensity increased discomfort ratings ( p<0.001) and was associated with a significant increase in both somatosensory evoked potential (SEP) N20-P25 amplitude and BOLD fMRI response in the contralateral primary (SI) and bilaterally in the secondary somatosensory cortices. Attention to stimulation was reduced during distractor task performance and resulted in an overall trend for reduction in discomfort ( p=0.056), which was significant at the highest stimulation level ( p<0.05). A volume of interest analysis confined to SI confirmed a reduction in BOLD response with distraction ( p<0.001). However, distraction did not measurably affect SEP magnitude. The quantitative relationship between the BOLD fMRI response and the local field potential measured by the early SEP response therefore varies with attentional context. This may be a consequence of differences in either local spatial or temporal signal summation for the two methods. Either interpretation suggests caution in assuming a simple, fixed relationship between local BOLD changes and related electrophysiological activity.

Adult↗