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PubMed2003

A comparison of hydrogen ion concentration and pH genetic predictions and fixed effect estimations when assessing pork quality.

An evaluation of ultimate pH (pH) and hydrogen ion concentration (H+) was conducted to determine if the mathematical conversion of H+ to pH could affect 1. fixed and random effect inferences and 2. prediction of genetic merit of animals when either pH or H+ is used as an indicator in the assessment of pork quality. Data from 4,262 purebred animals and 577 sires having complete three-generation pedigrees from the 1991 to 2001 National Barrow Show Progeny Tests were utilized in this study. Existing loin muscle pH data were converted to their original H+. Numerical changes in values occurred across all fixed effects and in the case of breed and test, changes in differences among subclasses occurred. These changes may result in differing inferences that can be made depending on whether pH or H+ is used as the dependent variable. Heritability estimates for pH and H+ were 0.52 +/- 0.074 and 0.62 +/- 0.078, respectively. The Pearson correlation between pH and H+ breeding values was -0.92. Spearman Rank correlation of -0.91 between pH and H+ breeding values was calculated and indicates that sires do not rank the same when ordered by breeding values for each trait. When pH is the selection objective, the selection differential reduction in H+ from these data ranges from 3.8 to 9.1%. Additionally, only 77.7% of the estimated genetic progress per generation in H+ is realized when selection (5% selected) is based on pH. The genetic correlation between pH and H+ was -0.96. Changes in the absolute values of the genetic correlations between various pork quality indicator traits and pH or H+ concentration were 0.04 or less. Differences in pH and H+ results could impact decisions made by swine breeders and meat processors who are concerned about pork quality. This, combined with the greater heritability and biochemical reality for H+, indicates that H+ rather than pH is the more appropriate trait breeders and processors should focus on when attempting to improve pork quality.

Animals↗
PubMed1987

[Syndromology and potential differentiated therapy in the early clinical forms of cerebral circulatory insufficiency].

The author has analyzed the findings of the examination of young and middle-aged patients (n = 425) with early clinical forms of cerebral circulatory insufficiency (ECFCCI) including initial manifestations of cerebral circulatory insufficiency and circulatory-disorder Stage I encephalopathy. Five syndromological variants of ECFCCI have been outlined on the basis of the patients' complaints and history, as well as objective minor symptomatology and the results of supplementary investigations. Each variant has its own pathogenetic basis. On the basis of the experience gained in the treatment of the patients examined, recommendations are provided on the differential selection of therapy in relation to a given syndromological variant of ECFCCI.

Cerebrovascular Disorders↗
PubMed2006

Differential protein expression in brain capillary endothelial cells induced by hypoxia and posthypoxic reoxygenation.

Cerebral ischemia causes functional alteration of the blood-brain barrier, formed by brain capillary endothelial cells (BCEC). Changes in protein expression and activity of selected differentially expressed enzymes were investigated in BCEC subjected to hypoxia (24 h) alone or followed by a 24-h reoxygenation. BCEC proteins were isolated, separated by 2-DE, and identified by MALDI-MS. Computer-based 2-D gel analysis identified 21 up-regulated proteins and 4 down-regulated proteins after hypoxia alone and 9 proteins that were further up-regulated after posthypoxic reoxygenation. The expression of the majority of hypoxia-induced proteins was reduced toward control levels during reoxygenation. The most prominent changes were identified for glycolytic enzymes (e.g., phosphoglycerate kinase), proteins of the ER (e.g., calreticulin), and cytoskeletal (e.g., vimentin) proteins. The results indicate that BCEC respond to hypoxia/reoxygenation by adaptive up-regulation of proteins involved in the glycolysis, protein synthesis, and stress response.

Animals↗
PubMed1992

Is behavior analysis undergoing selection by consequences?

The legacy of B. F. Skinner's life is a natural science of behavior. The generality of its basic functional relations has led, by induction, to the unifying principle of selection by consequences, which accounts for morphological, behavioral, and cultural evolution. This principle both predicts and explains the observation that the science itself is becoming the object of differential selection in our culture. Public policy is increasingly being framed in terms of the effects of consequences on behavior, as illustrated by examples from education, economics, and politics. Survival of our culture may depend on our skill in managing this process.

Behavior Therapy↗
PubMed1979

An attempt to select for increased longevity in Drosophila melanogaster.

Eight generations of selection towards a higher longevity were made in a wild strain of Drosophila melanogaster. Two control lines were also observed. Absolutely no response to selection was obtained whilst a major increase in longevity occurred between F2 and F4 in the three lines under observation. It is shown that the major increase in longevity is due neither to genetic drift, nor to changes in classical environmental conditions. The absence of response to selection is demonstrated to be due neither to a too low selection differential, nor to the absence of genetic variability in the strain, nor to inaccuracy in the measurements, nor to recurrent reproduction at an old age. The impossibility to select towards a higher longevity and the total absence of relation between parental and offspring longevities demonstrate that the very large phenotypic variability displayed by longevity in wild strains of D. melanogaster does not depend on a precise set of specific genes or polygenes with additive action. The results are briefly discussed in relation with inbreeding depression and heterosis for longevity and with similar results obtained in experiments of selection for duration of development.

Animals↗
PubMed1993

Activity of triciribine and triciribine-5'-monophosphate against human immunodeficiency virus types 1 and 2.

Triciribine (TCN) and its 5'-monophosphate (TCN-P) are novel tricyclic compounds with known antitumor activity; TCN-P is currently in phase II human clinical trials. We now report that these compounds have potent and selective activity against HIV-1 and HIV-2. Using a syncytial plaque assay, TCN and TCN-P were active against HIV-1 at 0.01-0.02 microM and had differential selectivities of 2250 and 1900, respectively, compared to 1850 for AZT. In contrast, TCN and TCN-P had minimal selectivity against human cytomegalovirus (50 and 27, respectively). TCN and TCN-P markedly inhibited HIV-1-induced p24 core antigen production, reverse transcriptase, and infectious virus production in a dose-dependent manner using HIV-1 acutely infected CEM-SS, H9, and persistently infected H9IIIB and U1 cells. In acutely infected PBL cells, TCN and TCN-P inhibited reverse transcriptase and infectious virus production but not p24 core antigen production. Using a microtiter XTT assay, TCN and TCN-P were active against a panel of HIV-1 and HIV-2 strains at IC50 values ranging from 0.02 to 0.46 microM. Evaluation of matched pairs of predrug and postdrug therapy HIV-1 isolates established that AZT-resistant and TIBO-resistant variants of HIV-1 were sensitive to TCN or TCN-P. Furthermore, unlike AZT and other fraudulent nucleosides, neither TCN, TCN-P, nor TCN-TP inhibited the viral reverse transcriptase. Thus, even though triciribine is a nucleoside chemically, it does not act biologically by classic nucleoside modalities but rather by a unique mechanism yet to be elucidated.

Acenaphthenes↗
PubMed1988

Divergent selection for growth in Japanese quail under split and complete nutritional environments. 1. Genetic and correlated responses to selection.

Japanese quail were divergently selected for 4-wk body weight under two different nutritional environments. In one environment quail were divergently selected for high and low body weight (H and L) under a split diet (SD) with quail having the opportunity to self-select feed from high protein and high energy diets. In the other environment, quail were similarly selected (H and L) under a normal (28% protein) complete diet (CD). After 11 generations of selection, H-SD and H-CD lines were 48.9 and 49.7% higher in 4-wk body weight than controls. Quail from L-SD and L-CD lines were 46.5 and 45.4% lower in 4-wk body weight than controls. Realized heritabilities for 4-wk body weight were .36 +/- .03, .30 +/- .03, .52 +/- .02, and .47 +/- .03 for H-SD, L-SD, H-CD, and L-CD lines, respectively. Selection differentials were significantly higher in the SD than in the CD environment. Changes in 2-wk, adult body, and egg weight across generations paralleled that of the trait under selection (4-wk body weight). Selection also resulted in decreased hatchability and egg production with increased age to sexual maturity in both environments. The SD environment was determined to be a stress environment because of birds' inferior growth there compared with growth in the CD environment. Rate of growth, however, to reach adult body size was superior for L-SD quail once the stress environment was removed. There was also evidence that eggs were larger for quail in the SD than the CD environment.

Animals↗
PubMed1996

[Technology: training centers--a new method for learning surgery in visceral surgery].

The importance of training centers can be best described after first answering a few questions like: 1. What kind of surgery will we deal with in the future? 2. What kind of surgeon do we need for this surgery, if it is basically different? 3. How will this surgeon have to be educated/trained for this different surgery? Although I am aware of the fact, that statements about future prospects are usually doomed to fail, I maintain that endoscopic surgery will be an essential part of general surgery. If this is so, surgery will be dominated by extremely complicated technology, new techniques and new instruments. It will be a "different" surgery. It will offer more comfort at the same safety. The surgeon of the future will still need a certain personality; he will still need intuition and creativity. To survive in our society, he will have to be an organiser and even a businessman. Additionally, something new has to be added: he will have to understand modern, complicated technology and will have to use totally different instruments for curing surgical illness. This makes it clear that we will need a different education/training and may be even a different selection of surgeons. We should learn from other professions sharing common interests with surgery, for example, sports where the common interest is achieving most complicated motions and necessarily highly differentiated coordination. Common interest with airline pilots is the target of achieving absolute security. They have a highly differentiated selection and training concept. Training centers may be-under certain prerequisites-a true alternative for this necessary form of training. They must have a concept, i.e. contents and aims have to be defined, structured and oriented on the requirements of surgery for the patient. Responsibility for the concept, performance and control can only be in the hands of Surgical Societies and Universities. These prerequisites correspond most likely to training centers being established by universities and managed by them. Training centers set up by the industry contain some trouble spots, from "sponsoring" over "normal business" to "corruption". Being aware of the fact that training centers will replace traditional "surgery schools"-teaching in their current state is technology and techniques-they are a true alternative for learning/training in general surgery.

Abdomen↗
PubMed1980

Differential expression of lectin receptors during hemopoietic differentiation: enrichment for granulocyte-macrophage progenitor cells.

Molecular changes occur at the surface of hemopoietic cells during differentiation from progenitor cells to mature granulocytes and macrophages. The differential expression of surface carbohydrate residues has been probed using lectins and the results used to purify normal mouse granulocyte-macrophage progenitor cells. Ten different lectins were screened for selective interaction with mouse hemopoietic colony-forming cells (CFCs), using agglutination or a quantitative analysis of the number of fluoresceinated lectin molecules bound per cell using a fluorescence activated cell sorter (FACS). Pokeweed mitogen (PWM), Helix pomatia agglutinin (HPA), soybean agglutinin (SBA), and peanut agglutinin (PNA) preferentially bound to CFCs so that it was possible to enrich 4 to 10-fold for these progenitor cells by sorting for the highly fluorescent cells. Further analysis of the low and high angle light scattering characteristics of the CFCs indicated that these cells were polydisperse, but could be enriched ten-fold by selecting for cells with high intensity low angle (0 degrees) scatter and low intensity high angle (90 degrees) scatter. PWM gave the best enrichment (10 to 15-fold) for adult bone marrow CFCs, for CFCs from fetal sources (fetal liver, fetal blood), and for CFCs from the spleens of mice injected previously with outer membrane lipoprotein from E. coli. Three parameter sorting for CFC using the FACS (low angle scatter, high angle scatter, and PWM-fluorescence) resulted in large enrichment factors (16 to 50-fold) for CFCs from all the above sources. Over 7% of the cells sorted from bone marrow, 10% of the cells sorted from post-lipoprotein spleen, and 28% of the cells sorted from fetal peripheral blood were hemopoietic CFCs. Ninety percent of the cells in these fractions had the morphology of blast cells or myelocytes. Thus, it was possible to identify the morphological characteristics of the hemopoietic progenitor cells. Screening of other developmental systems using quantitation of fluorescence with lectins should prove of general value for the purification of selected differentiation states.

Animals↗
PubMed2006

The impact of sample imbalance on identifying differentially expressed genes.

BACKGROUND: Recently several statistical methods have been proposed to identify genes with differential expression between two conditions. However, very few studies consider the problem of sample imbalance and there is no study to investigate the impact of sample imbalance on identifying differential expression genes. In addition, it is not clear which method is more suitable for the unbalanced data. RESULTS: Based on random sampling, two evaluation models are proposed to investigate the impact of sample imbalance on identifying differential expression genes. Using the proposed evaluation models, the performances of six famous methods are compared on the unbalanced data. The experimental results indicate that the sample imbalance has a great influence on selecting differential expression genes. Furthermore, different methods have very different performances on the unbalanced data. Among the six methods, the welch t-test appears to perform best when the size of samples in the large variance group is larger than that in the small one, while the Regularized t-test and SAM outperform others on the unbalanced data in other cases. CONCLUSION: Two proposed evaluation models are effective and sample imbalance should be taken into account in microarray experiment design and gene expression data analysis. The results and two proposed evaluation models can provide some help in selecting suitable method to process the unbalanced data.

Algorithms↗
PubMed2006

The Grb2/Mek pathway represses Nanog in murine embryonic stem cells.

The homeobox gene Nanog is a key intrinsic determinant of self renewal in embryonic stem (ES) cells, and its repression leads ES cells to selectively differentiate into primitive endoderm. Although Nanog repression occurs at the outermost layer of ES cell aggregates independent of the leukemia inhibitory factor (LIF)/STAT3 pathway, it is largely undetermined what external cues and intracellular signals cause the event. Of interest, addition of the tyrosine phosphatase inhibitor, sodium vanadate, selectively repressed Nanog transcription without any detectable changes in upstream transcriptional regulators Oct3/4 and Sox2. Furthermore, sodium vanadate induced primitive endoderm differentiation, even in the inner cells of ES cell aggregates. Expression of Gata6 and Zfp42, two putative downstream Nanog effectors, was also increased and decreased by the addition of sodium vanadate, respectively, but these changes were eliminated by exogenous Nanog expression. The effects of sodium vanadate were abrogated by Grb2 deficiency or by the addition of the Mek inhibitor, PD98059. Indeed, PD98059 prevented Nanog repression induced by ES cell aggregation as well. Furthermore, transfection of a constitutive active Mek mutant into ES cells induced Nanog repression and primitive endoderm differentiation. These data indicate that the Grb2/Mek pathway primarily mediates Nanog gene repression upon ES cell differentiation into primitive endoderm.

Animals↗
PubMed1983

Influences of sex steroids on experimental carcinogenesis.

Sex steroids can apparently modify hepatic function in at least two ways (Figure 1). First, the liver contains specific receptor proteins for either androgens or oestrogens. Several studies, using effects on the monooxygenase system as an indicator of hormone action, have shown good correlations between the presence of sex-steroid receptors and hepatic response to these hormones. In general, androgens induce the activities of drug biotransformation reactions, whereas oestrogens depress them. Second, the endocrine milieu, during a critical period of early development, apparently programmes the hypothalamic-pituitary axis to release factors which cause certain aspects of liver biochemistry to undergo sex differentiation. Selected components of the cytochrome P-450 system exhibit sex differences, and these differences are imprinted by neonatal androgens and are initiated and maintained by the pituitary gland. Corresponding to sex differentiation of the hepatic monooxygenase system are significant sex differences in responses to hepatocarcinogens such as N-2-fluorenylacetamide and N-hydroxy-N-2-fluorenylacetamide. Higher incidences of hepatocellular carcinomas in males appear to result from exposure to neonatal androgens.

Androgens↗
PubMed1995

Suppression of cyclin D1 but not cdk4 or cyclin A with induction of melanoma terminal differentiation.

To identify cyclins specifically associated with control of melanoma cell proliferation, we now compared expression of cyclin A, reported to be a marker for hematological malignancies, with that of cyclin D and its cdk4 kinase partner. All these proteins were expressed in proliferating B16 melanoma. However, L-tyrosine which induces melanoma terminal differentiation, selectively decreased cyclin D with no comparable effect on cdk4 or cyclin A. A 2-hour exposure of the cells to the tyrosine phosphatase inhibitor, sodium vanadate, further decreased cyclin D from differentiated cells, suggesting that tyrosine phosphorylation regulates cyclin D turnover. Addition of serum to starved cells also revealed that tyrosine did not block the early cyclin D increase associated with serum stimulation, but accelerated its subsequent loss. Our data suggest that cyclin D decrease with melanoma terminal differentiation could be an alternative mode of growth arrest even in cells harbouring a mutant or transcriptionally silent cdk4 inhibitor tumor suppressor p16ink4 gene. These results also imply that cyclin D may be useful as a target and as a prognostic marker in melanoma therapy.

Animals↗
PubMed1992

Rate of evolution of a quantitative character.

The rate of change of the mean of a quantitative character is evaluated exactly and also under the hypothesis of linear biparental regression. Generations are discrete and nonoverlapping; the monoecious population mates at random. The genotypic and environmental contributions to the character are additive and stochastically independent. The character is influenced by arbitrarily many multiallelic loci and has constant genotypic values; dominance, epistasis, and the linkage map are also arbitrary. The population is initially in linkage equilibrium, and there is no position effect. If the biparental regression is linear, then the regression coefficient is simply Vgam/V, and hence the single-generation change in the mean is deltaZ = (Vgam/V)S, where Vgam and V denote the gametic and total variances in the character and S designates the selection differential. The corresponding exact result is DeltaZ = (C/W) + (B/W2), where C, W and B represent the gametic covariance of the character and fitness, the mean fitness, and a correction term, respectively. If selection is weak, then DeltaZ approximately C/W. Furthermore, deltaZ = C/W if either there is no environmental contribution and the gametic effects are additive or the character is fitness itself. In the latter case, C is the gametic variance in fitness. Thus, even in linkage equilibrium, weakness of selection generally does not suffice to validate the linear-regression result. This conclusion holds even for additive loci.

Journal Article↗
PubMed1975

Methyl violet: a selective agent for differentiation of Klebsiella pneumoniae from Enterobacter aerogenes and other gram-negative organisms.

Three selective media for differentiation of Klebsiella pneumoniae from Enterobacter aerogenes on the basis of colonial morphology were evaluated. Using methyl violet 2B as a selective agent, strains of K. pneumoniae isolated from urine, fresh water, and fresh produce were tested against other members of Enterobacteriaceae in addition to strains of Aeromonas hydrophila and Pseudomonas aeruginosa. Comparison of colonial morphology showed K. pneumoniae produced larger, smoother colonies than other bacteria tested. These media were developed to aid in presumptive separation of K. pneumoniae from E. aerogenes in the monitoring of bacterial quality of water.

Aeromonas↗
PubMed1977

Divergent selection for yolk cholesterol in laying hens.

1. Lines were selected for divergence in yolk-cholesterol concentration for three and four generations in the Cornell Controll (Leghorn) and Athens-Canadian (AC) (meat-type) randombred populations respectively. Selection was based on both individual and family records. 2. Cholesterol values were obtained from two consecutively laid eggs when birds were 28 weeks of age. The yolks of eggs from individual hens were pooled and analysed for cholesterol content by the colorimetric assay of Zlatkis et al. (1953) on the "fat extract" obtained by a modification of the procedure of Folch et al. (1956). 3. The largest differences between high and low lines (1-27 and 1-38 mg cholesterol/g yolk) were observed in the last generation of selection. There was evidence of a lack of response in the low lines. Realized heritability estimates obtained by dividing the difference between high and low lines by half the cumulative selection differential ranged from 0-11 to 0-25 in the AC population and from 0-21 to 0-25 in the Leghorn population. Realised estimates on a within-line bassis suggest that selection for yolk cholesterol is effective only in the upward direction.

Animals↗
PubMed2006

Incomplete cryptic speciation between intertidal and subtidal morphs of Acrocnida brachiata (Echinodermata: Ophiuroidea) in the Northeast Atlantic.

The brittle-star Acrocnida brachiata (Montagu) lives in sandy-bottom habitat of both intertidal and subtidal zones along the coasts of the northwestern Europe. An allozyme frequency-based survey (five enzyme loci) was combined with a mitochondrial (mt) COI haplotype analysis (598-bp sequences) on 17 populations to trace back past colonization pathways from the actual population structure of the species. Both genetic markers display a sharp genetic break between intertidal (clade I) and subtidal populations (clade S). This break corresponds to an allele frequency inversion at three enzyme loci (Hk, Pgm and Pgi) and a deep divergence of about 20% in mtCOI sequences between most of the intertidal populations and other samples. The geographic distribution of clade I seems to be more restricted than clade S as it is absent from the intertidal of the eastern English Channel and North Sea and may be replaced by clade S in south Brittany. Applying previously published rates of mutation, divergence between the two clades is estimated to pre-date 5 million years ago and may be due to allopatric speciation processes at the Mio-Pliocene transition. The occurrence of putative hybrids in a few localities, however, suggests incomplete cryptic speciation with secondary contact zones. The relative importance of colonization history vs. habitat specialization are discussed in the light of neutral evolution as tested from mtCOI gene sequences. While differential selection seems to have contributed little to the separation of the lineages, it may have played a role in the emergence of adaptive polymorphisms in the hybrid zone. Furthermore, congruent spatial patterns of differentiation were observed in both clades suggesting a recent increase in population size. These findings are in agreement with a recent expansion of the populations during or after the formation of the English Channel, from a southern refuge for the subtidal clade whereas the intertidal clade may have persisted further north. As previously suspected for a species with a very short pelagic larval phase, contemporary gene flow between distant or adjacent populations appears to be extremely reduced or even absent.

Animals↗
PubMed1982

The "monitoring model" and the mortality X treatment interaction threat to validity in mental health outcome evaluation.

Symptom improvement rates among three cohorts of adult outpatients generated by a base-line monitoring model approach to outcome evaluation are presented. Follow-up questionnaire data were collected by mail. The cohorts represented approximately 40% self-selected samples from the parent populations of clients admitted for service. Efforts to interpret significant cohort improvement rate differences led to the conclusion that differences may have been the result of severely symptomatic clients differentially selecting themselves in/out of follow-up data collection. This Mortality X Treatment interaction threat to the validity of conclusions about service effectiveness is discussed in the context of Campbell and Stanley's recurrent institutional cycle design, with particular emphasis placed on reducing posttreatment data loss.

Community Mental Health Centers↗