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PubMed2000

Segregation distortion of T-DNA markers linked to the self-incompatibility (S) locus in Petunia hybrida.

In plants with a gametophytic self-incompatibility system the specificity of the pollen is determined by the haploid genotype at the self-incompatibility (S) locus. In certain crosses this can lead to the exclusion of half the gametes from the male parent carrying a particular S-allele. This leads to pronounced segregation distortion for any genetic markers that are linked to the S-locus. We have used this approach to identify T-DNA insertions carrying a maize transposable element that are linked to the S-locus of Petunia hybrida. A total of 83 T-DNA insertions were tested for segregation distortion of the selectable marker used during transformation with Agrobacterium. Segregation distortion was observed for 12 T-DNA insertions and at least 8 of these were shown to be in the same linkage group by intercrossing. This indicates that differential transmission of a single locus (S) is probably responsible for all of these examples of T-DNA segregation distortion. The identification of selectable markers in coupling with a functional S-allele will allow the preselection of recombination events around the S-locus in petunia. Our approach provides a general method for identifying transgenes that are linked to gametophytic self-incompatibility loci and provides an opportunity for transposon tagging of the petunia S-locus.

Crosses, Genetic↗

PubMed1975

Genetic dissection of segregation distortion II. Mechanism of suppression of distortion by certain inversions.

In(2L+2R)Cgamma and In(2LR)Pm2 are inversion-bearing chromosomes, the former carrying a paracentric inversion in each arm and the latter carrying a long pericentric. Both chromosomes produce normal segregation ratios when present in heterozygous males with certain segregation distorter chromosomes. The apparent suppression of distortion by these chromosomes was long attributed to a failure of synapsis, but this hypothesis has fallen out of favor recently because a large number of chromosome aberrations, particularly translocations and inversions, suppress distortion even though their breakpoints fall into no recognizable pattern. Although failure of synapsis does not appear to be the mechanism of suppression of distortion, what is responsible for the suppression remains unknown. In this paper it is shown that In(2L+2R)Cgamma and In(2LR)Pm2 suppress segregation distortion because they carry Rsp, a component of the segregation distorter system that renders a chromosome insensitive to distortion. Both chromosomes induce "suicide" of chromosomes carrying Sd Rsp+.

Animals↗

PubMed1976

Meiosis in male Drosophila melanogaster. II. Nonrandom segregation of compound-second chromosomes.

The segregation of compound-second chromosomes in males from two different stocks has been examined. Segregation is random in males from the C(2L)RM4, dp; C(2R)RM4, px stock. Gametes containing only one of the two compound chromosomes comprise 50% of the gametes, and gametes containing either both elements or neither element make up the other 50% of the gametes. In males from the C(2L)RM, b; C(2R)RM, cn stock, gametes containing either C(2L)RM, b or C(2R)RM, cn make up the majority of the gametes. Gametes containing both chromosomes or neither chromosome account for only 2-3% of the gametes. The nonrandom segregation is due to the C(2R)RM, cn chromosome. Viability is reduced in flies carrying the C(2R)RM, cn chromosome. This includes larval lethality, delayed development and premature adult lethality. Cytologically, this chromosome contains a large duplication of 2L material, which includes material proximal to region 38 or 39. It is suggested that the viability and segregational properties associated with this chromosome are due to the duplicated 2L material.

Animals↗

PubMed1977

Increased spontaneous mitotic segregation in MMS-sensitive mutants of Saccharomyces cerevisiae.

Methyl methanesulfonate (MMS)-sensitive mutants of Saccharomyces cerevisiae belonging to four different complementation groups, when homozygous, increase the rate of spontaneous mitotic segregation to canavanine resistance from heterozygous sensitive (canr/+) diploids by 13-to 170-fold. The mms8-1 mutant is MMS and X-ray sensitive and increases the rate of spontaneous mitotic segregation 170-fold. The mms9-1 and mms13-1 mutants are sensitive to X rays and UV, respectively, in addition of MMS, and increase the rate of spontaneous mitotic segregation by 13-fold and 85-fold, respectively. The mutant mms21-1 is sensitive to MMS, X rays and UV and increases the rate of spontaneous mitotic segregation 23-fold.

Canavanine↗

PubMed1980

Recombination and chromosome segregation during the single division meiosis in SPO12-1 and SPO13-1 diploids.

This paper reports a study of chromosome segregation and recombination during sporulation of spo12-1 and spo13-1 diploid strains of S. cerevisiae. These strains undergo a single division to form asci containing two diploid or near-diploid spores. The segregation of centromere-linked markers in the two-spored (dyad) products indicates that the division is generally equational. However, in a small percentage of the spo12-1 and spo13-1 cells, it appears that a meiosis I-like division occurs. Aberrant segregation of the MAT locus on chromosome III, yielding a monosomic and a trisomic spores pair, occurs in 12% of all dyads. The segregation patterns of markers at various distances from their centromeres and several pairs of markers on the same chromosome indicate that recombination takes place in both strains at nearly standard meiotic levels.

Chromosomes↗

PubMed1999

French Machado-Joseph disease patients do not exhibit gametic segregation distortion: a sperm typing analysis.

Segregation distortion has been reported to occur in a number of the trinucleotide repeat disorders. On the basis of a sperm typing study performed in patients of Japanese descent with Machado-Joseph disease (MJD), it was reported that disease alleles are preferentially transmitted during meiosis. We performed a sperm typing study of five MJD patients of French descent and analysis of the pooled data shows a ratio of mutant to normal alleles of 379:436 (46.5:53.5%), which does not support meiotic segregation distortion. To confirm these results, sperm typing analysis was also performed using a polymorphic marker, D14S1050, closely linked to the MJD1 gene. Among 910 sperm analyzed, the allele linked to the disease chromosome was detected in 50.3% of the samples and the allele linked to the normal chromosome was found in 49.6% of the sperm. The difference in frequency of these two alleles is not significant ( P = 0.8423). Likelihood-based analysis of segregation distortion in the single sperm data using the SPERMSEG program also showed no support for segregation distortion at the gamete level in this patient population. The previous report on the Japanese patients also suggested that disease allele stability may be influenced by a trans effect of an intragenic polymorphism (987 G/C) in the wild-type allele. All of the French patients were heterozygous for this polymorphism. However, analysis of the variance in repeat number in sperm from the French MJD patients overlapped significantly with the variance in repeat number observed in the C/C homozygous Japanese patients.

Alleles↗

PubMed2004

Suzuki segregation in a binary Cu-Si alloy.

Suzuki segregation to stacking faults and coherent twin boundaries has been investigated in a Cu-7.15 at.% Si alloy, heat-treated at temperatures of 275, 400 and 550 degrees C, using field-emission gun transmission electron microscopy. Silicon enrichment was observed at the stacking fault plane and decreased monotonically with increasing annealing temperature. This increase in the concentration of solute at the fault is due to the stacking fault energy being lowered at higher values of the electron-to-atom ratio of the alloy. From a McLean isotherm, the binding energy for segregation was calculated to be -0.021 +/- 0.019 eV atom(-1). Hardly any segregation was observed to coherent twin boundaries in the same alloy. This is because a twin has a lower interfacial energy than a stacking fault, so that the driving force for segregation is diminished.

Algorithms↗

PubMed2000

CHL1 is a nuclear protein with an essential ATP binding site that exhibits a size-dependent effect on chromosome segregation.

Saccharomyces cerevisiae chl1 mutants have a significant increase in the rate of chromosome missegregation. CHL1 encodes a 99 kDa predicted protein with an ATP binding site consensus, a putative helix-turn-helix DNA binding motif, and homology to helicases. Using site-directed mutagenesis, I show that mutations that are predicted to abolish ATP binding in CHL1 inactivate its function in chromosome segregation. Furthermore, overexpression of these mutations interferes with chromosome transmission of a 125 kb chromosome fragment in a wild-type strain. Polyclonal antibodies against CHL1 show that CHL1 is predominantly in the nuclear fraction of S. CEREVISIAE: CHL1 function is more critical for the segregation of small chromosomes. In chl1Delta1/chl1Delta1 mutants, artificial circular or linear chromosomes <150 kb in size exhibit near random segregation (0.12 per cell division), whereas all chromosomes tested >225 kb were lost at rates (5 x 10(-)(3) per cell division) comparable to that observed for endogenous chromosome III. These results reveal an important role for ATPases/DNA helicases in chromosome segregation. Such enzymes may alter DNA topology to allow loading of proteins involved in maintaining sister chromatid cohesion.

Adenosine Triphosphatases↗

PubMed1991

Segregation analysis of the structural genes of the major fibrillar collagens provides further evidence of molecular heterogeneity in type II Ehlers-Danlos syndrome.

Type II Ehlers-Danlos syndrome (EDS) is one of a group of disorders characterized by striking abnormalities of the soft connective tissues. The major fibrillar collagens (types I and III) found in these tissues have important stress-bearing functions and abnormal collagen could therefore account for the clinical features of this condition. We have used a number of restriction site dimorphisms, tightly linked to the structural genes of type I collagen (COL1A1 COL1A2) and type III collagen (COL3A1), to investigate the segregation of corresponding alleles in three pedigrees in which type II EDS was clearly inherited as a dominant trait. Discordant segregation of all three collagen genes was seen in a large pedigree that included 17 affected individuals with the typical phenotype of type II EDS. Thus mutations in neither type I nor type III collagen genes were responsible for the disease in this family. In a second small pedigree discordant segregation of the disease with both type I collagen loci was observed while the concordant segregation seen at COL3A1 could easily have arisen by chance (P = 0.5). The third pedigree was uninformative at all three collagen loci because of inability to discriminate between the parental alleles. These results suggest that there may be molecular heterogeneity of type II EDS since abnormalities of type I collagen have been described in other individuals phenotypically similar to those in our study.

Collagen↗

PubMed2005

Figure-ground segregation requires two distinct periods of activity in V1: a transcranial magnetic stimulation study.

Discriminating objects from their surroundings by the visual system is known as figure-ground segregation. This process entails two different subprocesses: boundary detection and subsequent surface segregation or 'filling in'. In this study, we used transcranial magnetic stimulation to test the hypothesis that temporally distinct processes in V1 and related early visual areas such as V2 or V3 are causally related to the process of figure-ground segregation. Our results indicate that correct discrimination between two visual stimuli, which relies on figure-ground segregation, requires two separate periods of information processing in the early visual cortex: one around 130-160 ms and the other around 250-280 ms.

Adult↗

PubMed1990

Texton segregation by associated differences in global and local luminance distribution.

Perceptual segregation of visual textures has been attributed to certain features ('textons') such as (elongated) blobs of given size and orientation, line crossings, and line ends. Differences in the spatial distribution of these features were assumed to be detected pre-attentively and to provide the instantaneous impression of segregating texture areas and of borders between them. This paper questions the validity of this general view and, in particular, the role of some of these features in texture discrimination. It is demonstrated that for some textons, perceptual segregation is independent of detection and discrimination of the texton itself. In addition, segregation can be strongly affected by positional or luminance jitter of texture elements or by other modifications that change the luminance distribution in the pattern but do not affect the supposed texton differences. From the textons reported in the literature, only differences in orientation were found to be fairly robust against such modifications.

Humans↗

PubMed1998

Could asynchrony in activity between the sexes cause intersexual social segregation in ruminants?

In many sexually dimorphic mammal species, the sexes live outside the mating season in separate social groups ('social segregation'). Social segregation occurs in a wide range of environmental conditions, but its cause in unknown. I suggest that social segregation is caused by a lower level of activity synchrony between individuals in mixed-sex groups than in single-sex groups, owing to sex differences in activity rhythm. As a consequence, mixed-sex groups are more likely to break up than single-sex groups, resulting in a predominance of single-sex groups at equilibrium. To test this hypothesis in red deer (Cervus elaphus L.), I developed an index of activity synchronization and showed that deer in mixed-sex groups were significantly less synchronized in their activity than deer in single-sex groups. Thus, low intersexual synchrony in activity can lead to social segregation. However, a lower level of intrasexual (female-female and male-male) activity synchrony within mixed-sex than within single-sex groups implies that additional factors (other than sex differences in foraging rhythm) contribute to the higher degree of instability of mixed-sex groups.

Animals↗

PubMed1999

A theoretical study of random segregation of minicircles in trypanosomatids.

The kinetoplast (k) DNA network of trypanosomatids is made up of approximately 50 maxicircles and the order of 10(4) minicircles. It has been proposed, based on various observations and experiments, that the minicircles are randomly segregated between daughter cells when the parent cell divides. In this paper, this random segregation hypothesis is theoretically tested in a population dynamics model to see if it can account for the observed phenomena. The hypothesis is shown to successfully explain, in Leishmania tarentolae, the observation that there are a few major and many minor minicircle classes, the fluctuations of minicircle class copy numbers over time, the loss of non-essential minicircle classes, the long survival times of a few of these classes and that these classes are likely to be the major classes within the population. Implications of the model are examined for trypanosomatids in general, leading to several predictions. The model predicts variation in network size within a population, variation in the average network size and large-scale changes in class copy number over long time-scales, an evolutionary pressure towards larger network sizes, the selective advantage of non-random over random segregation, very strong selection for the amplified class in Crithidia fasciculata if its minicircles undergo random segregation and that Trypanosoma brucei may use sexual reproduction to maintain its viability.

Animals↗

PubMed2005

Sex and segregation in temperate bats.

Many temperate insectivorous bats show marked sexual segregation during the summer, but in spectacular, pre-hibernation swarming, gather at caves to mate. In many species, sexual segregation is probably due to a gradient in aerial insect availability that confines females to lower elevations, where high reproductive costs are met by an abundant and reliable food supply. In the hawking and trawling Myotis daubentonii, we show that alongside inter-sexual segregation, there is intra-male segregation and suggest that this results from the exclusion of most males from high-quality habitat. These apparently excluded males suffer reduced foraging efficiency and mating success relative to males that roost with the females in summer. Changes in resources and behaviour at the end of the summer lead to a change in strategy that gives all males a chance to mate during swarming, but this does not overcome the paternity advantage to males that spend the summer with the females.

Animals↗

PubMed2003

Relevance of structural segregation and chain compaction for the thermodynamics of folding of a hydrophobic protein model.

The relevance of inside-outside segregation and chain compaction for the thermodynamics of folding of a hydrophobic protein model is probed by complete enumeration of two-dimensional chains of up to 18 monomers in the square lattice. The exact computation of Z scores for uniquely designed sequences confirms that Z tends to decrease linearly with sigma square root of N, as previously suggested by theoretical analysis and Monte Carlo simulations, where sigma, the standard deviation of the number of contacts made by different monomers in the target structure, is a measure of structural segregation and N is the chain length. The probability that the target conformation is indeed the unique global energy minimum of the designed sequence is found to increase dramatically with sigma, approaching unity at maximal segregation. However, due to the huge number of conformations with sub-maximal values of sigma, which correspond to intermediate, only mildly discriminative, values of Z, in addition to significant oscillations of Z around its estimated value, the probability that a correctly designed sequence corresponds to a maximally segregated conformation is small. This behavior of Z also explains the observed relation between sigma and different measures of folding cooperativity of correctly designed sequences.

Models, Statistical↗

PubMed2006

Coarsening of axial segregation patterns of slurries in a horizontally rotating drum.

Segregation structures of granular mixtures in rotating drums represent classical examples of pattern formation in granular material. We investigate the coarsening of axial segregation patterns of slurries in a long horizontally rotating cylinder. The dynamics and the three-dimensional geometry of the segregation structures are analyzed with optical methods and nuclear magnetic resonance imaging. Previous studies have mainly considered global statistical features of the pattern dynamics. In order to get insight into driving mechanisms for the coarsening process, we focus on the details of the dissolution of individual bands. We treat the coarsening as a consequence of interactions of adjacent bands in the pattern, which are determined by their geometrical relations. In addition to initially homogeneous mixtures, which evolve to spontaneously formed patterns, we study the evolution of specially prepared simple initial states. The role of the three-dimensional geometry of the axial core in the dissolution process of segregation bands is demonstrated. Relations between geometry and dynamic processes are established, which may help to find the correct microscopic models for the coarsening mechanism.

Journal Article↗

PubMed2000

Size segregation and convection of granular mixtures almost completely packed in a thin rotating Box

We simulate size segregation in granular mixtures which are almost completely packed in a rotating drum. Instead of a 3D drum, we simulate a 2D thin rotating box which is almost completely packed with granular mixtures. The phase inversion of a radially segregated pattern which was found in a 3D experiment is qualitatively reproduced with this simulation. A global convection appears after a radial segregation pattern is formed, and this convection induces an axially segregated pattern.

Journal Article↗

PubMed2000

Segregation transitions in wet granular matter

We report the effect of interstitial fluid on the extent of segregation by imaging the pile that results after bidisperse color-coded particles are poured into a silo. Segregation is sharply reduced and preferential clumping of small particles is observed when a small volume fraction of fluid V(f) is added. We find that viscous forces in addition to capillary forces have an important effect on the extent of segregation s and the angle of repose straight theta. We show that the sharp initial change and the subsequent saturation in s and straight theta occurs over similar V(f). We also find that a transition back to segregation can occur when the particles are completely immersed in a fluid at low viscosities.

Journal Article↗