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PubMed2001

Early visual processing deficits in schizophrenia: impaired P1 generation revealed by high-density electrical mapping.

Integrity of early visual sensory processing in schizophrenia was assessed using the well characterized P1 and N1 components of the visual evoked potential (VEP) as our dependent measures. VEPs were recorded in response to successively less fragmented line drawings of common objects. P1 amplitudes were significantly reduced across all stimulus conditions for patients versus controls. Further, this decrement was relatively greater at parieto-occipital than occipito-temporal electrode sites. No differences in N1 amplitude were found. The finding of P1 deficits in patients, particularly over dorsal scalp, supports the view that schizophrenia is associated with impairment of early dorsal visual stream processing. On the other hand, the finding of normal N1 amplitudes in patients suggests that early stages of ventral stream processing may be relatively more intact. These results imply that the cognitive impairment seen in schizophrenia is not just due to deficits in higher order aspects of cognition but also encompasses significant deficits in early sensory processing.

Adult↗
PubMed1998

Image processing algorithms for retinal montage synthesis, mapping, and real-time location determination.

Although laser retinal surgery is the best available treatment for choridal neovascularization, the current procedure has a low success rate (50%). Challenges, such as motion-compensated beam steering, ensuring complete coverage and minimizing incidental photodamage, can be overcome with improved instrumentation. This paper presents core image processing algorithms for 1) rapid identification of branching and crossover points of the retinal vasculature; 2) automatic montaging of video retinal angiograms; 3) real-time location determination and tracking using a combination of feature-tagged point-matching and dynamic-pixel templates. These algorithms tradeoff conflicting needs for accuracy, robustness to image variations (due to movements and the difficulty of providing steady illumination) and noise, and operational speed in the context of available hardware. The algorithm for locating vasculature landmarks performed robustly at a speed of 16-30 video image frames/s depending upon the field on a Silicon Graphics workstation. The montaging algorithm performed at a speed of 1.6-4 s for merging 5-12 frames. The tracking algorithm was validated by manually locating six landmark points on an image sequence with 180 frames, demonstrating a mean-squared error of 1.35 pixels. It successfully detected and rejected instances when the image dimmed, faded, lost contrast, or lost focus.

Algorithms↗
PubMed2002

Effect of superatmospheric oxygen packaging on sensorial quality, spoilage, and Listeria monocytogenes and Aeromonas caviae growth in fresh processed mixed salads.

Atmospheres with O2 levels higher than 70 kPa have recently been suggested as an innovation to modified atmosphere packaging (MAP) for fresh processed vegetables to maintain sensory quality and safety. In the present work, mixed vegetable salad collected from a commercial processing plant and stored with the MAP technique was studied. Two gas mixtures were actively generated by using an initial O2 concentration of 95 kPa and combined with two plastic films. The low-barrier film permeability for O2 was 1,629 mlO2/m2 x 24 h x atm with 30 microm of thickness (Hyplast, Hoogstraten, Belgium) and the O2 permeability of the high-barrier film was 2 mlO2/m2 x 24h x atm with 150 microm of thickness (Euralpack, Wommelgen, Belgium) at 23 degrees C. As control, active conventional MAP with application of 3 to 5 kPa of O2 and 6 to 8 kPa of CO2 was used. Packaged salads were stored up to 8 days at 4 degrees C and at temperatures simulating chilled distribution chain conditions. Microbial safety and sensory quality, as well as the survival of inoculated Listeria monocytogenes and Aeromonas caviae, were monitored. The effect of superatmospheric O2 on the growth of aerobic microflora was variable. Under superatmospheric conditions, lactic acid bacteria and members of Enterobacteriaceae were inhibited. Nevertheless, growth of yeast and A. caviae seem to be stimulated by superatmospheric O2, whereas growth of psychrotrophic bacteria and L monocytogenes was not affected. The overall visual appearance (mainly color) of the mixed vegetable salads was better maintained and the shelf life prolonged when packaged under O2 concentrations greater than 50 kPa.

Aeromonas↗
PubMed1988

Assessing the development of automatic processing: an application of dual-task and event-related brain potential methodologies.

Previous research has found that properties of automatic processing do not always co-occur, suggesting that the acquisition rates may differ. The present study investigated the acquisition rate of several of these properties by employing additive factors logic, dual task methodology, and event-related brain potentials. Seven subjects participated in a ten session experiment in which they performed two tasks, a visual/memory search task and a pursuit step tracking task, both together and separately. RT and P300 latency measures indicated that parallel processing of the display was achieved early in training in the consistent mapping condition. This processing was unaffected by dual task demands. An analysis of RT/P300 ratios suggests that another form of perceptual efficiency was achieved later in practice in both the varied and consistently mapped search tasks. This effect was larger in the consistent mapping condition. Reductions in the slope of the memory set function occurred significantly earlier for P300 latency than for RT, suggesting that the stimulus evaluation processes became automated more rapidly than the response selection components of memory search. Consistent with an analysis of the processing demands of the two tasks, the introduction of the tracking task and an increase in tracking difficulty produced equivalent interference during consistent and varied mapping conditions. Results are discussed in terms of models of skill, skill acquisition and component task automaticity.

Adult↗
PubMed2002

Functional mapping of quantitative trait loci underlying the character process: a theoretical framework.

Unlike a character measured at a finite set of landmark points, function-valued traits are those that change as a function of some independent and continuous variable. These traits, also called infinite-dimensional characters, can be described as the character process and include a number of biologically, economically, or biomedically important features, such as growth trajectories, allometric scalings, and norms of reaction. Here we present a new statistical infrastructure for mapping quantitative trait loci (QTL) underlying the character process. This strategy, termed functional mapping, integrates mathematical relationships of different traits or variables within the genetic mapping framework. Logistic mapping proposed in this article can be viewed as an example of functional mapping. Logistic mapping is based on a universal biological law that for each and every living organism growth over time follows an exponential growth curve (e.g., logistic or S-shaped). A maximum-likelihood approach based on a logistic-mixture model, implemented with the EM algorithm, is developed to provide the estimates of QTL positions, QTL effects, and other model parameters responsible for growth trajectories. Logistic mapping displays a tremendous potential to increase the power of QTL detection, the precision of parameter estimation, and the resolution of QTL localization due to the small number of parameters to be estimated, the pleiotropic effect of a QTL on growth, and/or residual correlations of growth at different ages. More importantly, logistic mapping allows for testing numerous biologically important hypotheses concerning the genetic basis of quantitative variation, thus gaining an insight into the critical role of development in shaping plant and animal evolution and domestication. The power of logistic mapping is demonstrated by an example of a forest tree, in which one QTL affecting stem growth processes is detected on a linkage group using our method, whereas it cannot be detected using current methods. The advantages of functional mapping are also discussed.

Chromosome Mapping↗
PubMed1999

HLA-B15 peptide ligands are preferentially anchored at their C termini.

Therapies to elicit protective CTL require the selection of pathogen- and tumor-derived peptide ligands for presentation by MHC class I molecules. Edman sequencing of class I peptide pools generates "motifs" that indicate that nonameric ligands bearing conserved position 2 (P2) and P9 anchors provide the optimal search parameters for selecting immunogenic epitopes. To determine how well a motif represents its individual constituents, we used a hollow-fiber peptide production scheme followed by the mapping of endogenously processed class I peptide ligands through reverse-phase HPLC and mass spectrometry. Systematically mapping and characterizing ligands from B*1508, B*1501, B*1503, and B*1510 demonstrate that the peptides bound by these B15 allotypes i) vary in length from 7 to 12 residues, and ii) are more conserved at their C termini than their N-proximal P2 anchors. Comparative peptide mapping of these B15 allotypes further pinpoints endogenously processed ligands that bind to the allotypes B*1508, B*1501, and B*1503, but not B*1510. Overlapping peptide ligands are successful in binding to B*1501, B*1503, and B*1508 because these B15 allotypes share identical C-terminal anchoring pockets whereas B*1510 is divergent in the C-terminal pocket. Therefore, endogenous peptide loading into the B15 allotypes requires that a conserved C terminus be anchored in the appropriate specificity pocket while N-proximal anchors are more flexible in their location and sequence. Queries for overlapping and allele-specific peptide ligands may thus be contingent on a conserved C-terminal anchor.

Alleles↗
PubMed2000

Functional mapping of human brain in olfactory processing: a PET study.

This study describes the functional anatomy of olfactory and visual naming and matching in humans, using positron emission tomography (PET). One baseline control task without olfactory or visual stimulation, one control task with simple olfactory and visual stimulation without cognition, one set of olfactory and visual naming tasks, and one set of olfactory and visual matching tasks were administered to eight normal volunteers. In the olfactory naming task (ON), odors from familiar items, associated with some verbal label, were to be named. Hence, it required long-term olfactory memory retrieval for stimulus recognition. The olfactory matching task (OM) involved differentiating a recently encoded unfamiliar odor from a sequentially presented group of unfamiliar odors. This required short-term olfactory memory retrieval for stimulus differentiation. The simple olfactory and visual stimulation resulted in activation of the left orbitofrontal region, the right piriform cortex, and the bilateral occipital cortex. During olfactory naming, activation was detected in the left cuneus, the right anterior cingulate gyrus, the left insula, and the cerebellum bilaterally. It appears that the effort to identify the origin of an odor involved semantic analysis and some degree of mental imagery. During olfactory matching, activation was observed in the left cuneus and the cerebellum bilaterally. This identified the brain areas activated during differentiation of one unlabeled odor from the others. In cross-task analysis, the region found to be specific for olfactory naming was the left cuneus. Our results show definite recruitment of the visual cortex in ON and OM tasks, most likely related to imagery component of these tasks. The cerebellar role in cognitive tasks has been recognized, but this is the first PET study that suggests that the human cerebellum may have a role in cognitive olfactory processing as well.

Adolescent↗
PubMed1995

[The cartographic method in hygiene research].

Certain properties of the map as a model are briefly examined. Use of the cartographic model in hygiene largely depends on space characteristics of the events and processes being studied. Hygiene as a science introduces into the map new, specific contents and a methodology that includes analysis and evaluation of mapped processes and events from the viewpoint of their impact upon people's health. Based on the events and processes imaged, a concise classification of maps used in hygiene is given.

Bulgaria↗
PubMed1999

Processing of syntactic information monitored by brain surface current density mapping based on MEG.

The cortical network subserving language processing is likely to exhibit a high spatial and temporal complexity. Studies using brain imaging methods, like fMRI or PET, succeeded in identifying a number of brain structures that seem to contribute to the processing of syntactic structures, while their dynamic interaction remains unclear due to the low temporal resolution of the methods. On the other hand, ERP studies have revealed a great deal of the temporal dimension of language processing without being able to provide more than very coarse information on the localisation of the underlying generators. MEG has a temporal resolution similar to EEG combined with a better spatial resolution. In this paper, Brain Surface Current Density (BSCD) mapping in a standard brain model was used to identify statistically significant differences between the activity of certain brain regions due to syntactically correct and incorrect auditory language input. The results show that the activity in the first 600 ms after violation onset is mainly concentrated in the temporal cortex and the adjacent frontal and parietal areas of both hemispheres. The statistical analysis reveals significantly different activity mainly in both frontal and temporal cortices. For longer latencies above 250 ms, the differential activity is more prominent in the right hemisphere. These findings confirm other recent results that suggest right hemisphere involvement in auditory language processing. One interpretation might be that right hemisphere regions play an important role in repair and re-analysis processes in order to free the specialised left hemisphere language areas for processing further input.

Adult↗
PubMed1998

Imaging RNA and dynamic protein segments with low-resolution virus crystallography: experimental design, data processing and implications of electron density maps.

Single crystal diffraction data were collected from virus crystals in the resolution range of 270 to 14 A using a synchrotron X-ray source and a small-angle scattering instrument adapted for single crystal measurements. Reflections were measured from single crystals of the capsid of the double-stranded DNA bacteriophage HK97 and synthetic Flock House virus-like particles (sFHV). The quality of the low-resolution measurements was confirmed by excellent scaling statistics for both data sets. The sFHV amplitudes between 270 and 90 A resolution were closely similar to independently measured solution scattering data, and to data calculated from the Fourier transform of a uniform density sphere of 315 A diameter. A rotation function computed with the sFHV data between 70 and 20 A resolution was readily interpretable. A uniform density sphere model was used to compute phases for measured amplitudes between 270 and 68 A resolution. The calculated phases were refined and extended to 14 A resolution with real space averaging employing an external mask shape defined by the high-resolution structure. The resulting electron density map displayed regions interpretable as loosely ordered RNA that connected ordered RNA segments seen in a published 3.0 A resolution map. The published high-resolution electron density map lacked data inside 15 A resolution and the interior of the particle in that map appeared hollow. Difference electron density maps corresponding to bulk RNA were computed by subtracting the contribution of the protein shell, based on the available high-resolution atomic model, from either the cryo-electron microscopy density or the low-resolution X-ray density. Features of the RNA were closely similar in the cryo-electron microscopy and X-ray maps, demonstrating the consistency of the two imaging methods. Electron density maps computed at 14 and 6 A resolution with the X-ray amplitudes showed that RNA contributed little to the scattering beyond 14 A resolution.

Bacteriophages↗
PubMed1982

Automatic and controlled attention processes in auditory target detection.

Shiffrin and Schneider proposed a general theory of attention that postulates the existence of automatic and controlled search processes. They concluded that automatic processes develop when the mapping between stimuli and responses is consistent and controlled processing occurs when the mapping is varied. The effects of consistent and varied mapping were examined in an auditory target detection task. Subjects listened for one or three target letters embedded in a stream of dichotic letter pairs. Subjects responded faster and made fewer errors under the consistent mapping (CM) condition than under the varied mapping (VM) condition, and the effect of memory set size decreased over practice in the CM condition but not the VM condition. The results are discussed in terms of automatic and controlled processes involved in recognition of target stimuli. A review of research on auditory target detection suggests that the development of automatic processes may account for some apparent discrepancies in the literature.

Attention↗
PubMed2004

Probabilistic pathway representation of cognitive information.

We present for mental processes the program of mathematical mapping which has been successfully realized for physical processes. We emphasize that our project is not about mathematical simulation of the brain's functioning as a complex physical system, i.e., mapping of physical and chemical processes in the brain on mathematical spaces. The project is about mapping of purely mental processes on mathematical spaces. We present various arguments--philosophic, mathematical, information, and neurophysiological--in favor of the p-adic model of mental space. p-adic spaces have structures of hierarchic trees and in our model such a tree hierarchy is considered as an image of neuronal hierarchy. Hierarchic neural pathways are considered as fundamental units of information processing. As neural pathways can go through the whole body, the mental space is produced by the whole neural system. Finally, we develop the probabilistic neural pathway model in that mental states are represented by probability distributions on mental space.

Cognition↗
PubMed2001

Physical mapping: integrating computational and molecular genetic data.

A crucial step beyond the identification of genetic linkage of a disease to a chromosomal region is the production of a physical map that will allow the identification of candidate genes. Although the process of physical map building has been facilitated by the flow of data released by the Human Genome Project, gathering all the information together requires significant effort. In a previous study, we reported linkage between Bipolar Affective Disorder and the chromosomal location 4p15.3--p16.1. In this review we use this example to describe how to collect publicly available sequence, DNA fingerprint, and genetic marker data and integrate these with empirical data to build a large scale high resolution physical map of a region. Methods used to identify new genetic markers and candidate genes within a circumscribed region are also presented.

Databases, Factual↗
PubMed2003

The structure of guideline recommendations: a synthesis.

We propose that recommendations in a clinical guideline can be structured either as collections of decisions that are to be applied in specific situations or as processes that specify activities that take place over time. We formalize them as "recommendation sets" consisting of either Activity Graphs that represent guideline-directed processes or Decision Maps that represent atemporal recommendations or recommendations involving decisions made at one time point. We model guideline processes as specializations of workflow processes and provide possible computational models for decision maps. We evaluate the proposed formalism by showing how various guideline-modeling methodologies, including GLIF, EON, PRODIGY3, and Medical Logic Modules can be mapped into the proposed structures. The generality of the formalism makes it a candidate for standardizing the structure of recommendations for computer-interpretable guidelines.

Decision Making, Computer-Assisted↗
PubMed1995

Microtubule-associated proteins in developing oligodendrocytes: transient expression of a MAP2c isoform in oligodendrocyte precursors.

The morphological differentiation of oligodendrocytes is characterized by the formation of multiple, microtubule-rich processes which endow these cells with the ability to myelinate many axons simultaneously. Since microtubule-associated proteins (MAPs) strongly influence the structure and function of microtubules, we have investigated their expression in cultured differentiating oligodendrocytes in order to gain insights into MAP function during process formation and stabilization. MAP1B has been compared with two other structural MAPs: MAP4, which is an ubiquitously expressed protein, and MAP2, which hitherto was thought to be confined to neurons and reactive astrocytes. Immunofluorescence microscopy showed that the colocalization of MAP4 with microtubules in oligodendrocyte processes is not as extensive as found previously for MAP1B (Vouyiouklis and Brophy: J Neurosci Res 35:257-267, 1993). Nevertheless, like MAP1B, the expression of MAP4 increases during oligodendrocyte differentiation. In contrast, the expression of MAP2 is transiently elevated in preoligodendrocytes but declines precipitously at the onset of terminal differentiation. Cells of the oligodendrocyte lineage exclusively express a novel isoform of MAP2c which is primarily localized in the cell bodies of preoligodendrocytes. This suggests that MAP2c assists in the initiation of process extension rather than in the stabilization of microtubules in the cytoplasm-filled membranous extensions of mature cells. MAP-tau was not expressed at any developmental stage by oligodendrocytes. The distinct subcellular localizations and patterns of developmental expression of MAP1B, MAP4, and MAP2c suggest that these MAPs have different roles in the regulation of the microtubule network during the differentiation of myelin-forming oligodendrocytes.

Amino Acid Sequence↗
PubMedDate not supplied

Process drift: preventing the adulteration of management methods in clinical practices.

This article discusses methods of mapping and standardizing processes in physician offices and ambulatory settings. It reviews the phenomenon of process shift: how a process, once established, changes over time and loses its effectiveness. The article presents the importance of this shift and how it leads to poor performance, along with methods to prevent it from occurring. The author details the development of process measures and internal benchmarking as a way of ensuring the ongoing integrity of office operations and maintenance of a high-performing office. The author also reviews the need to link job descriptions to process flowcharts.

Appointments and Schedules↗
PubMed2000

The human papillomavirus type 16 E5 protein modulates ERK1/2 and p38 MAP kinase activation by an EGFR-independent process in stressed human keratinocytes.

The human papillomavirus type 16 E5 gene product has been shown to upregulate the activation of MAP kinases ERK1/2 and cellular proliferation promoted by EGF in a ligand-dependent process. We now report the growth factor-independent modulation of MAP kinases by HPV 16 E5 in human keratinocytes. After treatment with 600 mM sorbitol or low concentrations of anisomycin, E5-expressing cells upregulate the activation of ERK1/2. In addition, E5 enhances p38 activation after anisomycin but not after sorbitol treatment, but it has no effect on MAP kinases activation after shocking the cells with 300 mM sodium chloride. The E5-mediated, sorbitol-dependent increase in ERK1/2 activation is EGF-independent and is only partially inhibited by tyrphostin AG1478, which is known to inhibit specifically EGF receptor activation.

Anisomycin↗
PubMed1994

Quantification of infarct size by thallium-201 single-photon emission computed tomography using the unfolded map method. Comparison with QRS score and angiographic infarct size at 4 weeks after infarction.

A new technique of data processing, the unfolded map method, was used with thallium-201 single-photon emission computed tomography to quantify infarct size in 35 patients with single-vessel disease at 4 weeks after their first myocardial infarction (24 anterior and 11 inferior infarcts), and the results were compared with those obtained by electrocardiography and contrast left ventriculography. The myocardial borders and the infarcted region were defined using the threshold technique and a cutoff value of 55%. Count profile data for each short-axis slice were unfolded zonally into single planes with the same ratio, and their areas were calculated from the slice thickness and radius. Thus, the size of the unfolded map represented the actual left ventricular myocardial area Infarct size was quantitated from the ratio of pixels in the infarcted region to those in the whole map, and the ratio itself was used as the percent infarct size. Although a defect 1 cm in diameter (0.8 cm2) could not be detected in a phantom study, defects > or = 2 cm in diameter (> or = 3.1 cm2) could be measured satisfactorily. The infarct size and percent infarct size determined by the unfolded map method correlated well with the QRS score (r = 0.841 and r = 0.838), the percentage of abnormally contracting segments on left ventriculography (r = 0.835 and r = 0.877), and the ejection fraction (r = -0.835 and r = 0.856). These data indicate that the unfolded map method provides adequate quantification of infarct size, even in the chronic phase, without complicated data processing.

Adult↗