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Functionalized macrocyclic ligands for use in supramolecular chemistry.

The synthesis of three cross-conjugated macrocycles bearing pyridine functionality is described. The ability of two of these molecules, 5a and 5c, to behave as 4,4'-bipyridine mimics in self-assembly reactions is demonstrated by axial coordination to a metalloporphyrin. The directed coordinative ability of the pyridine rings ensures predictable self-assembly into well-ordered nanoscale systems, both in solution and the solid state. 1H, 13C, and HMQC NMR spectroscopic experiments and ESI MS have been used to characterize the supramolecular complexes in solution. X-ray crystallographic analysis of solid-state assemblies 7a and 7c provides insight into the scope and flexibility of these macrocyclic ligands as supramolecular building blocks. UV-vis and fluorescence spectroscopies provide a description of their electronic characteristics.

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Syntheses of novel 4-tert-alkyl ether proline-based 16- and 17-membered macrocyclic compounds.

Starting from N-Cbz-4-hydroxyproline methyl ester 1, a boron trifluoride-diethyl etherate-catalyzed reaction provided 4-tert-alkyl ether proline 4. Two deprotections and amide bond formations furnished the phenol alcohol 2. The macrocyclization of 2 was accomplished through a Mitsunobu reaction using triphenylphosphine and 1,1'-(azodicarbonyl)dipiperidine (ADDP), to afford novel 16- and 17-membered proline-based macrocyclic compounds of type 3.

Combinatorial Chemistry Techniques↗

Synthesis and conformational analysis of optically active ferrocene containing macrocyclic peptides.

Two macrocyclic peptides 3 and 4 were formed during lactamization of 1,1'-ferrocenylbis(alanine) 1. Isolation, structure determination, and conformational analysis of 3 and 4 are reported as well as a controlled stepwise synthesis of 4 also including an improved route to 1. On the basis of their (1)H NMR spectra recorded at 300 K in DMSO-d(6), the dimer 3 and trimer 4 were found to be C(2) and C(3) symmetric, respectively. As appeared from computational analysis, the low-energy conformations of the macrocyclic peptides were nonsymmetric. Cyclic voltammetry revealed that the ferrocenyl moieties in 3 or 4 are electrochemically equal to ferrocene.

Dimerization↗

Synthesis and structure of macrocyclic bis(hydroxynaphthoic amide)s connected by an achiral or chiral diamine.

Macrocyclic bis(hydroxynaphthoic amide)s 6, connected by an achiral or chiral diamine, were synthesized by the tandem Claisen rearrangement. CD spectra, X-ray crystallographic analyses, and variable-temperature NMR measurements of the chiral bis(hydroxynaphthoic amide)s revealed that the two hydroxynaphthalene rings in these macrocycles adopt a twisted conformation both in solution and in the crystalline state because of the steric hindrance between the two hydroxynaphthalene rings and that the chirality of the twisted conformation is generated by that of the chiral linker. Theoretical calculations revealed that the chiral linker works effectively to favor energetically one conformer of the diastereomers, although a flipping process was possible and can be observed to occur on the NMR time scale in variable-temperature experiments.

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Identification of novel macrocyclic peptidase substrates via on-bead enzymatic cyclization.

Peptidase-catalyzed formation of macrocyclic lactams on solid phase identifies ring systems that are favorably bound in the enzyme active site. We evaluated several cyclic peptide motifs linked by ester bonds between the P2 and P1' or the P1 and P2' side chains. The depsipeptide represented by structure 5 was readily generated by a variety of peptidases from precursor omega-amino acids or omega-amino esters. This strategy for identifying ring systems for potential macrocyclic transition state analogues was demonstrated with the serine peptidases trypsin and chymotrypsin, with the aspartic peptidase pepsin, and with the zinc peptidase thermolysin.

Amides↗

Synthesis of macrocyclic peptide analogues of proteasome inhibitor TMC-95A.

The synthesis of three constrained macrocyclic peptide analogues 1 of TMC-95A as potential proteasome inhibitors is described. The key step involves a Ni(0)-mediated macrocyclization of tripeptides 2 bearing halogenated aromatic side chains for the formation of the biaryl junction. In addition, an enantioselective preparation of l-7-bromotryptophan methyl ester 3 using a Corey-O'Donnell alkylation of the glycine benzophenone imine was achieved in good overall yield with very high ee (>85%) on a multigram scale.

Alkylation↗

Synthesis of diverse macrocyclic peptidomimetics utilizing ring-closing metathesis and solid-phase synthesis.

The synthesis of a range of highly functionalized peptidomimetic macrocycles has been accomplished using ring-closing metathesis and enyne tandem cross-metathesis-ring-closing metathesis reactions. This approach gives access to rigidified macrocycles modeled on the structures of cyclic peptides and designed to be biologically stable. The potential for peripheral functionalization of these templates has been demonstrated using Diels-Alder reactions, palladium(0) coupling reactions, and amide formation both in the solution phase and using polymer-supported syntheses.

Alkylation↗

Synthesis of a pondaplin dimer and trimer. Aromatic interactions in novel macrocycles.

Synthetic challenges in the use of an oxabicyclo[2.2.2]octenone moiety as a masked arene for the synthesis of pondaplin are disclosed. During the course of a study of the Heck reaction as a tool for macrocyclization to provide strained paracyclophanes, novel macrocycles displaying intra- and intermolecular aromatic interactions have been synthesized. The geometry of these interactions is compared to recent computational literature data.

Alkenes↗

Synthesis of well-defined tower-shaped 1,3,5-trisubstituted adamantanes incorporating a macrocyclic trilactam ring system.

We describe the synthesis of two novel well-defined tower-shaped 1,3,5-trisubstituted adamantanes 30 and 33 that incorporate a macrocyclic trilactam ring system. Each nanoscale molecule has a broad tripodal base consisting of three identical sulfur-containing termini as the tripod feet, 4-acetylsulfanylmethylphenyl units in the case of 30 and 3,5-bis(acetylsulfanylmethyl)phenyl units in the case of 33. The sulfur atoms are designed to bind the molecules trivalently to the apex of a gold-coated commercial AFM tip through formation of three S-Au bonds. The rigid adamantane-derived head unit with a single hydrogen atom at the apex is designed to scan the sample. Molecules 30 and 33 are synthesized from 1,3,5-triethynyladamantane by a series of Sonogashira coupling reactions involving terminal alkynes and aryl iodides. A macrocyclic trilactam unit is included for added rigidity. We demonstrate that molecule 30 is sufficiently large and rigid to be visualized by a conventional AFM tip. These nanoscale molecules may also find application as chemically well-defined nanoscale objects for calibration of AFM tips.

Adamantane↗

Pores Formed by Bis-macrocyclic Bola-amphiphiles in Vesicle and Planar Bilayer Membranes.

A new series of bis-macrocyclic bola-amphiphiles were prepared, and their transport activities in vesicle and planar bilayer membranes were evaluated. From vesicle experiments, the apparent kinetic order in transporter indicates that aggregates are the kinetically active species. Step-conductance changes observed in planar bilayer membranes indicate that the compounds act as channels. Multiple copies of the same channel form in which the conductance is controlled by the macrocyclic portions of the structures. The pores are ion-selective in the sequence Cs(+) > K(+) > Na(+) > Cl(-), controlled by the polar head-groups of the structures. The data are consistent with a model involving the formation of active dimers.

Journal Article↗

Complexes of Macrocycles with gamma-Cyclodextrin As Deduced from NMR Diffusion Measurements.

The complexes of 12-crown-4 (12C4), cyclen (12N4), and 1,4,7,10-tetrathiacyclododecane (12S4) with gamma-cyclodextrin (gamma-CD) were studied by NMR diffusion measurements in the absence and in the presence of inorganic and organic salts. The 12-crown-4:gamma-CD system was also used to evaluate the effect of the nature of the cation and the anion on the association between the macrocycle and the gamma-CD. In addition, we have studied the solvent effect and the pH effect on the association constant of the gamma-CD:12C4 complex. Based on these measurements, the following conclusions could be reached: (1) All three macrocycles form complexes of moderate stability with gamma-CD, (2) the association constants of these complexes are much higher in the absence of the salts, (3) the decrease in the association due to addition of salts seems to be independent on the nature of the cation or the anion, and (4) in contrast to most gamma-CD complexes, the association constants between 12-crown-4 and gamma-CD are nearly identical in pure D(2)O and in 80:20 (v/v) CD(3)OD/D(2)O and only slightly lower in pure DMSO-d(6), suggesting that the hydrophobic interaction is not the main driving force for complexation in these systems. The pH has only a nonsignificant effect on the association constant of the gamma-CD:12C4 complex. Plausible explanations for the above observations and the advantages and disadvantages of NMR diffusion measurements for determination of association constants are discussed.

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Total Synthesis of Archaeal 36-Membered Macrocyclic Diether Lipid.

Total synthesis of archaeal 36-membered macrocyclic diether lipid 2 is reported. The synthesis is based upon stereoselective preparation of functionalized isoprenoid chains, ether-linkage formation between the isoprenoid chains with a glycerol derivative, and the ultimate intramolecular dicarbonyl coupling using low-valent titanium known as McMurry coupling. This synthetic method has successfully provided the first practical route to chemically defined archaeal macrocyclic membrane lipids, which were not available because of the lack of synthetic access. Also described is a highly stereoselective and convenient synthesis of stereochemically homogeneous archaeal biphytanyl glycerol lipid 1.

Journal Article↗

A New Generation of "Cholaphanes": Steroid-Derived Macrocyclic Hosts with Enhanced Solubility and Controlled Flexibility.

The macrocyclic "cholaphanes" 3a-c were synthesized from the inexpensive steroid cholic acid. Like earlier relatives they feature substantial cavities with inward-directed hydroxyl groups, suitable for binding polar molecules such as carbohydrates in nonpolar media. New features are the externally directed alkyl chains, promoting solubility in organic solvents, and (in the case of 3b/c) reduced conformational freedom resulting from truncation of the steroidal side-chain. In particular, modeling shows that the smallest macrocycle 3c possesses very little flexibility, preferring an open conformation which is also revealed in the X-ray crystal structure of its pentahydrate. NMR studies indicated that all three cholaphanes form 1:1 complexes with octyl beta-D-glucoside in CDCl(3), with K(a) = 600-1560 M(-)(1). Cholaphanes 3b/c proved able to extract methyl beta-D-glucoside from aqueous solutions into CHCl(3). The transport of methyl beta-D-glucoside across a chloroform barrier was also demonstrated for 3c.

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Total Synthesis of Archaeal 72-Membered Macrocyclic Tetraether Lipids.

Total synthesis of archaeal 72-membered macrocyclic tetraether lipids 3a and 3b is reported. The synthesis was principally composed of preparation of the functionalized half-sized diether compounds 11 and 15 first followed by appropriate dimerization through Julia coupling and final macrocyclization of the crucial dialdehydes 23 and 31 by McMurry coupling. This strategy appeared to be advantageous for the stereoselective synthesis of both natural 72-membered tetraether lipids 3a and 3b using common synthetic intermediates. In addition, this approach was so designed that its synthetic flexibility would allow construction of unnatural structural variants for physicochemical studies. Also described are the results of differential scanning calorimetric analysis of the synthesized lipids 3a and 3b. Both 3a and 3b showed almost the same phase behavior with the broad endothermic phase transition at -53 degrees C. The enthalpy of the phase transition, DeltaH, was estimated to be 1.8 and 1.9 kcal/mol for 3a and 3b, respectively. The physicochemical as well as polymorphismic properties of 3a and 3b turned out to be indistinguishable despite of their regioisomeric structures. The physical structure of the phases in terms of the chemical structure is also discussed.

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Proton-Template Synthesis, Structure, and Characterization of a Robson-Type Macrocycle with a Totally pi-Conjugated System.

pi-Conjugated (1-4) and partially reduced (5) macrocyclic Schiff bases have been obtained by proton-template condensation of 2,6-diformyl-4-R(1)-phenol (R(1) = Me, t-Bu) with 1,2-diamino-4,5-R(2)-benzene (R(2) = H, Me). The macrocyclic ligands have been characterized by elemental analysis, by IR, (1)H NMR, and (13)C NMR spectroscopy, and by electron impact mass spectrometry. Also, the X-ray crystal structures of 1 and 2 were solved. The crystals were all grown from formic acid. Crystal 1 is triclinic, space group P-1 with a = 867.1(5), b = 916.3(4), and c = 1087.2(3) pm and alpha = 69.62(2), beta = 87.57(3), and gamma = 63.72(4) degrees for Z = 1. Crystal 2 is monoclinic, space group P2(1)/n with a = 632.0(1), b = 1661.5(3), and c = 1658.0(3) and beta = 99.87(3) degrees for Z = 2. Both of the molecules are planar with centers of symmetry. They are protonated twice while being neutralized by two negatively charged perchlorate ions.

Journal Article↗

A Unified Strategy toward the Synthesis of Acerogenin-Type Macrocycles: Total Syntheses of Acerogenins A, B, C, and L and Aceroside IV.

A general strategy for the synthesis of acerogenin-type diarylheptanoids containing an endocyclic biaryl ether bond has been developed, and convergent total syntheses of acerogenin A, B, C, and L and aceroside IV have been accomplished. Cycloetherification of the linear diarylheptanoid 1-(4-fluoro-3-nitrophenyl)-7-(3-hydroxy-4-methoxyphenyl)heptan-3-one (18) under mild conditions (CsF, DMF, 0.01 M, rt, 5 h) gave the macrocycle 4-methoxy-17-nitro-2-oxatricyclo[13.2.2(3,7)]eicosa-1(18),3,5,7(20),15(19),16-hexaen-12-one (19) in 95% yield. Removal of the nitro group followed by O-demethylation gave acerogenin C (2), whose reduction afforded acerogenin A (1). Glucosidation of 2 with 2,3,4,6-alpha-D-tetrabenzoylglucopyranosyl bromide followed by saponification gave aceroside IV (3) in excellent overall yield. Acerogenins B (4) and L (5) were synthesized in a similar fashion featuring a key intramolecular S(N)Ar reaction of linear compound 29. The entropy driving force resulting from the preorganization of cyclization precursors in favor of the bent conformation was proposed to contribute significantly to the efficiency of this cyclization. Both computational studies and spectroscopic data (NOE) supported this hypothesis. Experimentally, it was observed that even at high concentration (1 M of 18 in DMF) the analytically pure macrocycle 19 could still be obtained in 45-50% isolated yield. Furthermore, when the cyclization of 18 was carried out in the presence of an external nucleophile (4-methoxyphenol, 33) or an electrophile (4-fluoro-3-nitrotoluene, 34), only the 15-membered cyclophane 19 was isolable. This provides experimental evidence that compound 18 is indeed preorganized in such a way that intramolecular reaction was highly competitive with the alternative intermolecular process.

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Glucopyranoside Recognition by Polypyridine-Macrocyclic Receptors Possessing a Wide Cavity with a Flexible Linkage.

New polypyridine-macrocyclic receptors for glucopyranosides were designed and synthesized. The artificial receptors possess a terpyridine skeleton as a hydrogen-bonding site and a flexible polyoxyethylene chain as a bridge for the macrocyclic structure, in which the cavity of the receptors is large enough to incorporate pyranosides. The receptors showed high affinities for n-octyl beta-(D)-glucopyranoside, and selective binding of the receptors was observed between epimeric pyranosides. The results obtained in this paper demonstrated versatility of the terpyridine skeleton as a hydrogen-bonding site for saccharides.

Journal Article↗

Surface enhanced second harmonic generation from macrocycle, catenane, and rotaxane thin films: experiments and theory.

Surface enhanced second harmonic generation (SE SHG) experiments on molecular structures, macrocycles, catenanes, and rotaxanes, deposited as monolayers and multilayers by vacuum sublimation on silver, are reported. The measurements show that the molecules form ordered thin films, where the highest degree of order is observed in the case of macrocycle monolayers and the lowest in the case of rotaxane multilayers. The second harmonic generation activity is interpreted in terms of electric field induced second harmonic (EFISH) generation where the electric field is created by the substrate silver atoms. The measured second order nonlinear optical susceptibility for a rotaxane thin film is compared with that obtained by considering only EFISH contribution to SHG intensity. The electric field on the surface of a silver layer is calculated by using the Delphi4 program for structures obtained with TINKER molecular mechanics/dynamics simulations. An excellent agreement is observed between the calculated and the measured SHG susceptibilities.

Journal Article↗