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PubMed1998

Fire and insects in northern and boreal forest ecosystems of North America.

Fire and insects are natural disturbance agents in many forest ecosystems, often interacting to affect succession, nutrient cycling, and forest species composition. We review literature pertaining to effects of fire-insect interactions on ecological succession, use of prescribed fire for insect pest control, and effects of fire on insect diversity from northern and boreal forests in North America. Fire suppression policies implemented in the early 1900s have resulted in profound changes in forest species composition and structure. Associated with these changes was an increased vulnerability of forest stands to damage during outbreaks of defoliating insects. Information about the roles that both fire and insects play in many northern forests is needed to increase our understanding of the ecology of these systems and to develop sound management policies.

Journal Article↗
PubMed2004

Screening large-scale association study data: exploiting interactions using random forests.

BACKGROUND: Genome-wide association studies for complex diseases will produce genotypes on hundreds of thousands of single nucleotide polymorphisms (SNPs). A logical first approach to dealing with massive numbers of SNPs is to use some test to screen the SNPs, retaining only those that meet some criterion for further study. For example, SNPs can be ranked by p-value, and those with the lowest p-values retained. When SNPs have large interaction effects but small marginal effects in a population, they are unlikely to be retained when univariate tests are used for screening. However, model-based screens that pre-specify interactions are impractical for data sets with thousands of SNPs. Random forest analysis is an alternative method that produces a single measure of importance for each predictor variable that takes into account interactions among variables without requiring model specification. Interactions increase the importance for the individual interacting variables, making them more likely to be given high importance relative to other variables. We test the performance of random forests as a screening procedure to identify small numbers of risk-associated SNPs from among large numbers of unassociated SNPs using complex disease models with up to 32 loci, incorporating both genetic heterogeneity and multi-locus interaction. RESULTS: Keeping other factors constant, if risk SNPs interact, the random forest importance measure significantly outperforms the Fisher Exact test as a screening tool. As the number of interacting SNPs increases, the improvement in performance of random forest analysis relative to Fisher Exact test for screening also increases. Random forests perform similarly to the univariate Fisher Exact test as a screening tool when SNPs in the analysis do not interact. CONCLUSIONS: In the context of large-scale genetic association studies where unknown interactions exist among true risk-associated SNPs or SNPs and environmental covariates, screening SNPs using random forest analyses can significantly reduce the number of SNPs that need to be retained for further study compared to standard univariate screening methods.

Case-Control Studies↗
PubMed2003

Using satellite imagery to locate innovative forest management practices in Nepal.

There is a critical need to locate innovative forest management institutions that significantly impact forest cover change. This research presents an initial "proof of concept" methodology which combines deforestation theory with satellite image change analysis to identify forested areas that, theoretically, should probably not be there. Ten such "forest anomalies" are identified using temporal analysis of Landsat TM imagery of the Chitwan district in Nepal, linked with a GIS database on roads and a visual estimation of topography. A rapid field reconnaissance is undertaken to determine which of these anomalies exhibit interesting forest management innovations. Based on this information, one case is selected for detailed field study: this turns out to be a major case of community forestry and a premier ecotourism initiative that we were not aware of until we undertook this analysis. The utility and limitations of the method are described for monitoring trends in forest cover change.

Conservation of Natural Resources↗
PubMed2006

The growth-defense trade-off and habitat specialization by plants in Amazonian forests.

Tropical forests include a diversity of habitats, which has led to specialization in plants. Near Iquitos, in the Peruvian Amazon, nutrient-rich clay forests surround nutrient-poor white-sand forests, each harboring a unique composition of habitat specialist trees. We tested the hypothesis that the combination of impoverished soils and herbivory creates strong natural selection for plant defenses in white-sand forest, while rapid growth is favored in clay forests. Recently, we reported evidence from a reciprocal-transplant experiment that manipulated the presence of herbivores and involved 20 species from six genera, including phylogenetically independent pairs of closely related white-sand and clay specialists. When protected from herbivores, clay specialists exhibited faster growth rates than white-sand specialists in both habitats. But, when unprotected, white-sand specialists outperformed clay specialists in white-sand habitat, and clay specialists outperformed white-sand specialists in clay habitat. Here we test further the hypothesis that the growth defense trade-off contributes to habitat specialization by comparing patterns of growth, herbivory, and defensive traits in these same six genera of white-sand and clay specialists. While the probability of herbivore attack did not differ between the two habitats, an artificial defoliation experiment showed that the impact of herbivory on plant mortality was significantly greater in white-sand forests. We quantified the amount of terpenes, phenolics, leaf toughness, and available foliar protein for the plants in the experiment. Different genera invested in different defensive strategies, and we found strong evidence for phylogenetic constraint in defense type. Overall, however, we found significantly higher total defense investment for white-sand specialists, relative to their clay specialist congeners. Furthermore, herbivore resistance consistently exhibited a significant trade-off against growth rate in each of the six phylogenetically independent species-pairs. These results confirm theoretical predictions that a trade-off exists between growth rate and defense investment, causing white-sand and clay specialists to evolve divergent strategies. We propose that the growth-defense trade-off is universal and provides an important mechanism by which herbivores govern plant distribution patterns across resource gradients.

Animals↗
PubMed2006

Climate effects on fire regimes and tree recruitment in Black Hills ponderosa pine forests.

Climate influences forest structure through effects on both species demography (recruitment and mortality) and disturbance regimes. Here, I compare multi-century chronologies of regional fire years and tree recruitment from ponderosa pine forests in the Black Hills of southwestern South Dakota and northeastern Wyoming to reconstructions of precipitation and global circulation indices. Regional fire years were affected by droughts and variations in both Pacific and Atlantic sea surface temperatures. Fires were synchronous with La Niñas, cool phases of the Pacific Decadal Oscillation (PDO), and warm phases of the Atlantic Multidecadal Oscillation (AMO). These quasi-periodic circulation features are associated with drought conditions over much of the western United States. The opposite pattern (El Niño, warm PDO, cool AMO) was associated with fewer fires than expected. Regional tree recruitment largely occurred during wet periods in precipitation reconstructions, with the most abundant recruitment coeval with an extended pluvial from the late 1700s to early 1800s. Widespread even-aged cohorts likely were not the result of large crown fires causing overstory mortality, but rather were caused by optimal climate conditions that contributed to synchronous regional recruitment and longer intervals between surface fires. Synchronous recruitment driven by climate is an example of the Moran effect. The presence of abundant fire-scarred trees in multi-aged stands supports a prevailing historical model for ponderosa pine forests in which recurrent surface fires affected heterogenous forest structure, although the Black Hills apparently had a greater range of fire behavior and resulting forest structure over multi-decadal time scales than ponderosa pine forests of the Southwest that burned more often.

Chronology as Topic↗
PubMed2006

The phylogenetic structure of a neotropical forest tree community.

Numerous ecological and evolutionary processes are thought to play a role in maintaining the high plant species diversity of tropical forests. An understanding of the phylogenetic structure of an ecological community can provide insights into the relative importance of different processes structuring that community. The objectives of this study were to measure the phylogenetic structure of Neotropical forest tree communities in the Forest Dynamics Plot (FDP) on Barro Colorado Island, Panama, to determine how the phylogenetic structure of tree communities varied among spatial scales and habitats within the FDP, and to study the effects of null-model choice on estimates of community phylogenetic structure. We measured community phylogenetic structure for tree species occurring together in quadrats ranging in size from 10 x 10 m to 100 X 100 m in the FDP. We estimated phylogenetic structure by comparing observed phylogenetic distances among species to the distribution of phylogenetic distances for null communities generated using two different null models. A null model that did not maintain observed species occurrence frequencies tended to find nonrandom community phylogenetic structure, even for random data. Using a null model that maintained observed species frequencies in null communities, the average phylogenetic structure of tree communities in the FDP was close to random at all spatial scales examined, but more quadrats than expected contained species that were phylogenetically clustered or overdispersed, and phylogenetic structure varied among habitats. In young forests and plateau habitats, communities were phylogenetically clustered, meaning that trees were more closely related to their neighbors than expected, while communities in swamp and slope habitats were phylogenetically overdispersed, meaning that trees were more distantly related to their neighbors than expected. Phylogenetic clustering suggests the importance of environmental filtering of phylogenetically conserved traits in young forests and plateau habitats, but the phylogenetic overdispersion observed in other habitats has several possible explanations, including variation in the strength of ecological processes among habitats or the phylogenetic history of niches, traits, and habitat associations. Future studies will need to include information on species traits in order to explain the variation in phylogenetic structure among habitats in tropical forests.

Ecosystem↗
PubMed2006

Tropical forest restoration: tree islands as recruitment foci in degraded lands of Honduras.

Tropical forest recovery in pastures is slowed by a number of biotic and abiotic factors, including a lack of adequate seed dispersal and harsh microclimatic extremes. Accordingly, methods to accelerate forest recovery must address multiple impediments. Here, we evaluated the ability of "tree islands" to serve as "recruitment foci" in a two-year study at three sites in northern Honduras. Islands of three sizes (64, 16, and 4 m2) and at two distances to secondary forest (20 and 50 m) were created by planting 2 m tall vegetative stakes of two native species: Gliricidia sepium (Fabaceae) and Bursera simaruba (Burseraceae), each in monoculture. Open-pasture "islands" of equal sizes served as controls. Tree islands reduced temperature and light (PAR) extremes as compared to open pasture, creating a microenvironment more favorable to seedling establishment. Seed-dispersing birds (quantified at one site only) showed an overwhelming preference for islands; 160 visits were recorded to islands compared with one visit to open pasture. Additionally, frugivores visited large islands more often, and for longer time periods, than small islands, thereby increasing the likelihood of a dispersal event there. In total, 144 140 seeds belonging to 186 species were collected in islands; more than 80% were grasses. Tree islands increased zoochorous tree seed rain; seed density and species richness were greater in tree islands than in open pasture, and large islands had greater seed density than smaller islands (Gliricidia only), suggesting that they are more effective for restoration. Distance to forest did not affect seed rain. A total of 543 seedlings and 41 species established in islands; > 85% were zoochorous. Seedling density did not differ among treatments (mean 0.2 seedlings/m2 for islands vs. 0.1 seedlings/m2 for pasture), although an increasing trend in tree islands over the course of two years suggests that seedling recruitment is accelerated there. Lastly, similar seedling densities were censused in the 1 m perimeter surrounding islands, suggesting that islands can expand outward into pasture. Planting vegetative stakes to create tree islands in pastures accelerates forest recovery by overcoming a number of impediments, and presents a simple, broadly applicable alternative for facilitating forest regeneration in abandoned pastures.

Animals↗
PubMedDate not supplied

Leaf litter dynamics and nitrous oxide emission in a Mediterranean riparian forest: implications for soil nitrogen dynamics.

Mediterranean riparian zones can experience severe drought periods that lead to low soil moisture content, which dramatically affects their performance as nitrate removal systems. In the Mediterranean riparian zone of this study, we determined that N2O emission was practically nil. To understand the role of forest floor processes in nitrogen retention of a Mediterranean riparian area, we studied leaf litter dynamics of two tree species, London planetree [Platanus x acerifolia (Aiton) Willd.] and alder [Alnus glutinosa (L.) Gaertn.], for two years, along with soil nitrogen mineralization rates. Annual leaf litter fall equaled 562.6 +/- 10.1 (standard error) g dry wt. m(-2), 68% of which was planetree and 32% of which was alder. The temporal distribution of litterfall showed a two-peak annual cycle, one occurring in midsummer, the other in autumn. Planetree provided the major input of organic nitrogen to the forest floor, and the amount of planetree leaves remaining on the forest floor was equivalent to approximately four years of stock. Leaf litter decomposition was three times higher for alder (decay coefficient [k] = 1.13 yr(-1)) than for planetree (k = 0.365 yr(-1)). Mineralization rates showed a seasonal pattern, with the maximum rate in summer (1.92 mg N kg(-1) d(-1)). Although the forest floor was an important sink for nitrogen due to planetree leaf accumulation, 7.5% of this leaf litter was scoured to the streambed by wind. This loss was irrelevant for alder leaves. Due to the litter quality, the forest floor of this Mediterranean riparian forest acts as a nitrogen sink.

Betulaceae↗
PubMed2001

Water quality characteristics of forest rivers around Lake Biwa.

Forest river surveys were carried out at upper streams of several rivers in the Lake Biwa watershed to understand the water quality characteristics of the rivers, and to find out their relationships with forest features such as geographical, geological and vegetational data. The results showed: (1) Forests have some purification functions for nitrogen and organic matter, but become sources for most of ionic species. (2) Main mineral species in forest rivers are Ca2+, Mg2+ and Na+, HCO3-, CO3(2-), Cl-, SO4(2-) and SiO2. (3) Loading from forests was 0.4-7 kg/km2/d for TN and 0.01-0.3 kg/km2/d for TP. (4) River quality reflects the properties of each forest, and is unique to the place, especially in ionic species such as Ca2+ and Cl-. (5) A cluster analysis successfully categorized ionic components into several groups.

Ecosystem↗
PubMed1992

Effects of fuel and forest conservation on future levels of atmospheric carbon dioxide.

We develop a numerical simulation of the global biogeochemical cycles of carbon that works over time scales extending from years to millions of years. The ocean is represented by warm and cold shallow water reservoirs, a thermocline reservoir, and deep Atlantic, Indian, and Pacific reservoirs. The atmosphere is characterized by a single carbon reservoir and the global biota by a single biomass reservoir. The simulation includes the rock cycle, distinguishing between shelf carbonate and pelagic carbonate precipitation, with distinct lysocline depths in the three deep ocean reservoirs. Dissolution of pelagic carbonates in response to decrease in lysocline depth is included. The simulation is tuned to reproduce the observed radiocarbon record resulting from atomic weapon testing. It is tuned also to reproduce the distribution of dissolved phosphate and total dissolved carbon between the ocean reservoirs as well as the carbon isotope ratios for both 13C and 14C in ocean and atmosphere. The simulation reproduces reasonably well the historical record of carbon dioxide partial pressure as well as the atmospheric isotope ratios for 13C and 14C over the last 200 yr as these have changed in response to fossil fuel burning and land use changes, principally forest clearance. The agreements between observation and calculation involves the assumption of a carbon dioxide fertilization effect in which the rate of production of biomass increases with increasing carbon dioxide partial pressure. At present the fertilization effect of increased carbon dioxide outweighs the effects of forest clearance, so the biota comprises an overall sink of atmospheric carbon dioxide sufficiently large to bring the budget approximately into balance. This simulation is used to examine the future evolution of carbon dioxide and its sensitivity to assumptions about the rate of fossil fuel burning and of forest clearance. Over times extending up to thousands of years, the results are insensitive to the formulation of the rock cycle and to the dissolution of deep sea carbonate sediments. Atmospheric carbon dioxide continues to increase as long fossil fuel is burned at a significant rate, because the rate of fossil fuel production of carbon dioxide far exceeds the rates at which geochemical processes can remove carbon dioxide from the atmosphere. The maximum concentration of carbon dioxide achieved in the atmosphere depends on the total amount of fossil fuel burned, but only weakly on the rate of burning. The future course of atmospheric carbon dioxide is, however, very sensitive to the fate of the forests in this simulation because of the important role assigned to carbon dioxide fertilization of plant growth rate. Forest clearance drives up atmospheric carbon dioxide not only by converting biomass into atmospheric carbon dioxide but more importantly by reducing the capacity of the biota to sequester fossil fuel carbon dioxide. In this simulation, atmospheric carbon dioxide levels could be sustained indefinitely below 500 parts per million (ppm) if fossil fuel combustion rates were immediately cut from their present value of 5 x 10(14) m/y to 0.2 x 10(14) m/y (a factor of 25 reduction) and if further forest clearance were halted. If neither of these conditions is met and if we consume most of the world's fossil fuel reserves, peak carbon dioxide concentrations of 1000-2000 ppm are probable within the next few centuries.

Atmosphere↗
PubMed2001

[Carbon equilibrium in Larix gmelinii forest and impact of global change on it].

In order to provide a methodological demonstration for the study of C cycle in forest, the CENTURY model was applied to simulate the C cycle in Larix gmelinii forest and to approach the impact of global change on it. The results showed that the Larix gmelinii forest served as a C sink, with an annual net absorption of 2.65t.hm-2. Climate change and increased atmospheric CO2 concentration benefited for the net primary production (CNPP) and net C absorption capacity of forests in North China. When the atmospheric temperature was increased by 2 degrees C, the gross biomass and NPP of Larix gmelinii forest increased, while soil C content decreased, and the variation of these three indices was bigger when the precipitation was decreased by 20% than increased by 20%, indicating that the limiting factor for the forest growth in this area is atmospheric temperature, while precipitation is abundant or even too much.

Carbon↗
PubMed2000

[Rainfall interception capacity of forest canopy between two different stands].

Based on the observation data, the rainfall interception capacity of the canopy in plantation and natural forest stands and its relation to rainfall were examined using the method of taking maximum under the same rainfall. The results showed that the rainfall interception capacity of plantation forest increased rapidly with the increase of rainfall, because of its even distribution of branches and leaves, which was higher under low rainfall less than 30 mm, and the saturation interception capacity was easily reached, depending on the quantity of branches and leaves in the canopy. Although the interception capacity of natural forest was relatively weak under low rainfall less than 30 mm, compared with plantation forest, it was much stronger under heavy rainfall more than 30 mm. The saturation interception of natural forest was larger than that of plantation forest.

Ecosystem↗
PubMed2000

Production and reduction of nitrous oxide in agricultural and forest soils.

A soil-water slurry experiment was conducted to study the potentials of N2O production and reduction in denitrification of agricultural and beech forest soils in Denmark. The effects of nitrate and ammonium additions on denitrification were also investigated. The forest soil showed a higher denitrification potential than the agricultural soil. However, N2O reduction potential of the agricultural soil was higher than the beech forest soil, shown by the ratio of N2O/N2 approximately 0.11 and 3.65 in the agricultural and the beech forest soils, respectively. Both nitrate and ammonium additions stimulated the N2O production in the two soils, but reduced the N2O reduction rates in the agricultural soil slurries. In contrast to the effect on the agricultural soil, nitrate reduced the N2O reduction rate in the beech forest soil, while ammonium showed a stimulating effect on the N2O reduction activity. After one week incubation, all of the N2O produced was reduced to N2 in the agricultural soil when nitrate was still present. Nitrous oxide reduction in the beech forest soil occurred only when nitrate almost disappeared. The different nitrate inhibitory effect on the N2O reduction activity in the two soils was due to the difference in soil pH. Inhibition of nitrate on N2O reduction was significant under acidic condition. Consequently, soil could serve as a sink of atmospheric N2O under the conditions of anaerobic, pH near neutral and low nitrate content.

Crops, Agricultural↗
PubMed2001

Litterfall and organic matter decomposition in a seasonal forest of the eastern Chaco (Argentina).

Amazonia and the Gran Chaco are the largest phytogeographic units of the Neotropical Region. The Forest Wedge of the Santa Fe province of Argentina is the southernmost part of the Eastern Chaco, and there are three main types of forest, 1) the mixed dense forests, 2) the Schinopsis balansae "quebrachal" and 3) the Prosopis nigra var. ragonesei forests, distributed along an environmental gradient correlated with topographic elevation. In this paper litterfall and organic matter decomposition of four species were studied in two different microsites in a Schinopsis balansae forest during three years. Litter fall varied along the year following seasonal environmental variation but litterfall variations between years were not significant. Litterfall was not uniform over the whole surface, under close canopy monthly average litterfall amounts 32.67 g/m2, in open gaps 4.47 g/m2 and 15.07 g/m2 under medium density canopy. Organic matter decomposition, like in other forests, was a negative exponential function of time, and the decomposition rate is independent from the microsites where it falls, 0.15 and 0.12 in sunny and shadow microsites respectively for Maytenus vitis-idaea, 0.10 and 0.11 in sunny and shadow microsites respectively for Achatocarpus praecox, 0.04 and 0.03 for Acacia praecox, 0.04 and 0.06 for Schinopsis balansae in sunny and shadow microsites respectively. Shurbs litter was decomposed faster than the tree litter, and the shurbs litter nutrientes level was also higher. Therefore the rate of organic matter decomposition is more correlated with leaf characteristics than with environmental variables.

Argentina↗
PubMed2002

[Analysis on forest plant diversity in the Three Gorges Reservoir Area].

The forest resource is rich in the Three Gorges Reservoir Area, according to the investigation data in the area, there are 41 kinds of forest communities, and the trend of the richness index, species diversity index and evenness index is not regular. In the coniferous forest, the trend of the richness index in different layer along the community is shrub > herb > tree. In the evergreen broadleaf forest, the trend is shrub > tree > herb. In the deciduous broadleaf forest, especially the typical Quercus forest, the trend is shrub > herb and tree, but in the herb layer and the tree layer, the trend fluctuates. The trend of the species diversity index is tree < herb and shrub, but in the herb layer and the shrub layer, the trend fluctuates. In other communities, the trend of all indices along the community fluctuates too. One reason may be the different natural environment and different growth condition of the community, and the long time strong disturbance of the human population is another important factor that couldn't be ignored.

China↗
PubMed2002

[Spatial heterogeneity and forest regeneration].

The research on spatial heterogeneity is meaningful for forest regeneration dynamics, which is a critical part in the forest ecosystem dynamics. Traditionally, forestry scientists are mainly concentrated their attention to the studies on the process of regeneration. However forests are spatiotemporal heterogeneous. In regeneration, there exists an ecological dynamic process at temporal scale, but also a heterogeneous pattern at spatial scale. Almost of the factors influencing forest regeneration, including both botic and abotic environment, both natural and human disturbances, and both characteristics of tree species and response of tree species to different disturbance agents, are spatially heterogeneous. Discussion on spatial heterogeneity and its effect on regeneration is indispensable for the understanding of the pattern, process and mechanism of forest regeneration. Main research contents and viewpoints of spatial heterogeneity in forest regeneration were summarised on the basis of available literature, and sources of spatial heterogeneity in the process of regeneration were analysed. The response of species to spatial heterogeneity, small-scale spatial heterogeneity and regeneration dynamics, spatial heterogeneity of lights in stand and regeneration pattern, and correlative relationships between the scales of soil heterogeneity and regeneration heterogeneity were reviewed.

Trees↗
PubMed2002

Seed dissemination by frugivorous birds from forest fragments to adjacent pastures on the western slope of Volcán Barva, Costa Rica.

Logging, cattle raising, and agricultural activities have caused the destruction of most forested areas in Costa Rica. In some middle and highlands the abrupt topography delayed the complete destruction of montane forest. Consequently, some fragments of almost pristine forest remain along streams that run in deep canyons. Frequently, these remnants serve as corridors between larger forested areas and as routes for movement of frugivorous birds. Eighteen bird species, e.g., Turdus plebejus, Elaenia frantzii and Ptilogonys caudatus are common dwellers of forest patches throughout the Pacific slope of the Volcán Barva. These species fly frequently from forest fragments to adjacent pastures. They defected and regurgitated seeds of 28 plant species on stumps scattered on pasture areas. Isolated trees and specially the stumps are suitable microhabitats for germination of seeds and establishment of seedings.

Agriculture↗
PubMed2002

Microflora of soils under pine forests area affected by gradation of leaf-eating insects.

Soils of pine forests in the Bytnica Forestry District, Poland, are poor in nutrients readily accessible to plants. The excessively acidic reaction of the soils, typical for soils under pine forests, unfavourably affects the growth of microorganisms whose numbers are lower than in soils under deciduous and mixed forests. In the pine forests of the studied forestry there were outbreaks of a defoliating insect - pine beauty moth (Panolis flammea L.), which resulted in over 60% defoliation of the trees. The studies were carried out on the area of tree stands subjected to gradation by leaf-eating insects (sprayed and not sprayed) and healthy stand of the same age class (age 60 to 70 years). The studies revealed increased number of soil microorganisms in samples taken from the area affected by pine beauty moth gradation in the case of both unsprayed areas and those sprayed with the pesticide. The occurrence in these soils of larger numbers of ammonifying and denitrifying bacteria points to the presence of conditions favouring the growth of heterotrophic organisms. Changes in the number of actinomycetes and fungi in soils under tree stands subjected to gradation by insects, compared to healthy stands, can be a consequence of a change of environmental conditions (e.g. % content of organic carbon). Soils under defoliated tree stands show higher biochemical activity related to nitrogen cycling in the pine forest ecosystem. This leads to higher availability of organic nitrogen for conversion to inorganic forms of nitrogen, which are utilised by trees. Further changes occurring in soils under forest stands affected by gradation by leaf-eating insects would allow to gain knowledge on the ecological consequences of the use of insecticides in the protection of pine stands against harmful insects, with particular stress on those situations in which pine stands not threatened by complete defoliation are sprayed.

Actinobacteria↗