Factors affecting the evaluation of chemicals in laboratory experiments using marine organisms.
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The determination of toxic effects of pollutants with the marine polychaete worm Ophryotrocha diadema.
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Aniline Compounds↗
Comparative kinetics for bioaccumulation of polychlorinated biphenyls by the polychaete (Capitella capitata) and fish (Mugil cephalus).
The bioaccumulation of Aroclors 1242, 1254, and 1260 from sediments by the polychaete (Capitella capitata) and from water by the mullet (Mugil cephalus) was measured in aquarium experiments and followed by clearance investigations. This allowed calculation of the bioaccumulation factor (KB), uptake rate constant (k1), clearance rate constant (k2), and derived half-life (t1/2). The k2 and t1/2 values were of comparable magnitude for each organisms, but k1 values, calculated for polychaetes on the basis of PCB concentrations in whole sediment, were considerably lower, as were the KB values similarly determined. Using the Freundlich equation, an expression was developed for KB assuming that uptake occurred from interstitial water. This expression required the use of empirically developed constants for sedimentary characteristics but gave values for k1 and KB comparable to the values obtained with the fish.
Animals↗
Thermochromism of heme adducts of Glycera hemoglobin and some other monomeric heme proteins.
The thermally induced difference spectra of myoglobin (Mb) and Glycera dibranchiata hemoglobin (Hbm) derivatives and of cytochrome-c were recorded between 4 degrees and 30 degrees C in the 390-750 nm range. Thermodynamic parameters were estimated and upper and lower temperature limiting spectra were deduced for the various heme protein derivatives' equilibria. The effective iron d-electron population divides the hemes broadly into two different groups of behavior type. In the first group, Hbm(III)N3, Hbm(III), Mb(III)(H2O), and Cytc(III) show equilibria between two spin states. The weakest coupling between the heme and the globin occurs among the second group, for Hbm(II)CO and Mb(II)CO, which in the higher temperature limit undergoes averaging of the carbonyl tilt, while an axially elongated geometry is probably accessed for Hbm(II)NO and Mb(II)NO. Examples of the less common situation of increased absorption intensity and/or low-spin states at higher temperature were found in both groups. In the case of the methyl thioglycolate low-spin adducts of Hbm(III), an acid/base equilibrium involving thioglycolate deprotonation occurs. Apparent enthalpy-entropy compensation is exhibited by all these heme derivatives, and it is suggested that the delta H degrees and delta S degrees values relate to the intimacy of coupling between the heme structure and the solvent-dependent microconformation of the globin.
Animals↗
The giant extracellular hemoglobin from the polychaete Neanthes diversicolor. The cDNA-derived amino acid sequence of linker chain L2 and the exon/intron boundary conserved in linker genes.
The 4000 kDa extracellular hemoglobin from the polychaete Neanthes diversicolor consists of three types of subunits; three 15 kDa monomers (chains M1, M2 and M3), a 45 kDa disulfide-bonded trimer of chains T1, T2 and T3, and two 50-55 kDa disulfide-bonded homodimeric linkers (chains L1 and L2). The latter linker subunits are essential for the assembly of the other heme-containing subunits, monomers and a trimer. The cDNA encoding the linker chain L2 was amplified by polymerase chain reaction (PCR), and the cDNA-derived amino acid sequence of 235 residues has been determined. The sequence showed 22-75% identity with other linker chains. All of the linker sequences examined so far have a highly conserved cysteine-rich segment at positions 89-130: Xaa3-Cys-Xaa6-Cys-Xaa6-Cys-Xaa6-Cys-Asp-Gly-X aa2-Asp-Cys-Xaa4-Asp-Glu-Xaa4-Cys, and the motif corresponds exactly to the cysteine-rich repeats of the ligand-binding domains of vertebrate low-density lipoprotein (LDL) receptors (Suzuki, T. and Riggs, A.F. (1993) J. Biol. Chem. 268, 13548-13555). A 287 bp intron interrupts the coding sequence of Neanthes L2 gene just at the N-terminal boundary of this motif, and the position of the splice junction was exactly conserved in Neanthes and Lumbricus linker genes. This suggests that the intron has been conserved for at least 450 million years in annelid linker genes. The evolutionary origin of the remaining parts of linker chains is unclear, but it is noteworthy that the topology of the two intrachain disulfide bridges in the C-terminal segment of linker chains is homologous with that of the carbohydrate-recognition domain of animal C-type lectin.
Amino Acid Sequence↗
The physico-chemical and functional properties of Abarenicola affinis affinis (Ashworth) extracellular haemoglobin (erythrocruorin).
The purified erythrocruorin from the Arenicolid polychaete, Abarenicola affinis affinis (Ashworth) has an S020,w of 57.5 S, and a molecular weight of 3.29 . 10(6) as determined by sedimentation equilibrium at pH 7.0. In the electron microscope it displays a two-tiered hexagonal array characteristic of other annelid erythrocruorins and chlorocruorins, with dimensions of approximately 25.5 nm diameter and 17.0 nm height. The isoelectric point of the molecule is at pH 4.63, and its amino acid composition and absorption spectrum are similar to those of other annelid erythrocruorins. The haem and iron contents are 2.77% and 0.23%, corresponding to minimum molecular weights of 22 250 and 24 800, respectively. In pH-induced dissociation studies, the erythrocruorin is found to be stabilized by Ca2+ up to pH 8.6, while in the presence of EDTA, dissociation begins at pH 7.8. In discontinuous gel electrophoresis, dissociated erythrocruorin gives subunits with molecular weights 263 000, 117 500, 68 400, 35 900 and 28 800, while, in detergent electrophoresis in the presence of 2-mercaptoethanol, polypeptide chains with molecular weights 13 700, 15 800, 24 700, 27 800 and 33 600 are obtained. Abarenicola erythrocruorin is also shown to bind oxygen cooperatively with a Hill coefficient h = 4.0 and P50 = 6.0 mmHg at pH 7.0 and 25 degrees C. Over the pH range of 7.0 to 7.8 the molecule lacks an alkaline Bohr effect.
Amino Acids↗
The subunits of Abarenicola affinis affinis (Ashworth) extracellular haemoglobin (erythrocruorin).
The subunits of the erythrocruorin of Abarenicola affinis affinis (Ashworth) were investigated by various physicochemical methods. Gel chromatography at pH 9.0 in Sephadex G-200 gave three main protein peaks with molecular weights of 240 000, 100 000 and 31 000, respectively. Polyacrylamide gel electrophoresis showed considerable heterogeneity in the subunits, although the main components gave similar molecular weight ranges to the above. Anomalous results were also obtained in SDS-polyacrylamide gel electrophoresis. In the analytical ultracentrifuge, the subunit from the first peak showed a sedimentation coefficient of 10 S and Mw 250 000, and the second yielded s20,w = 5 S. Functionally, the 10 S subunit showed cooperative oxygen binding, but the Hill coefficient was lower than that observed for the native molecule. A possible model for the subunit structure of Abarenicola affinis affinis erythrocruorin is discussed.
Animals↗
Anomalous pH dependence of the heme-bound carbon monoxide spectroscopic properties in the Glycera dibranchiata monomer hemoglobin fraction compared to vertebrate hemoglobins.
The pH dependence of infrared and NMR spectroscopic parameters for carbon monoxide bound to human, equine, rabbit and Glycera dibranchiata monomer fraction hemoglobins has been examined. In all cases, the vertebrate hemoglobins exhibit CO vibrations and 13CO chemical shifts which are pH dependent, whereas the invertebrate hemoglobin does not. The Glycera dibranchiata monomer fraction exhibits the highest wavenumber CO vibration (1970 cm-1) and the most shielded chemical shift (206.2 ppm). The pH behavior of the vertebrate CO-hemoglobins is that the heme-coordinated carbon monoxide chemical shifts and principal infrared vibrations tend toward the values observed for the G. dibranchiata CO-hemoglobin fraction. These results are interpreted as originating in protonation of the distal histidine (E-7) in the vertebrate hemoglobins. The anomalous values for Glycera dibranchiata are concluded to be due to the absence of a distal histidine (E-7 His----Leu) in the heme pocket and not to gross structural dissimilarities between the proteins of the different species examined. Primary sequence similarity matrices have been constructed to compare the functional classes of amino acids at homologous positions for the CD and E helices and for the primary heme contacts in human, equine, sperm whale myoglobin, and the Glycera dibranchiata monomer hemoglobin to illustrate this point. They reveal a high correspondence for all globins and do not correlate with the spectroscopic parameters of heme-coordinated CO.
Animals↗
The molecular size of Myxicola infundibulum chlorocruorin and its subunits.
The molecular shape and size of the extracellular chlorocruorin of Myxicola infundibulum was determined using scanning transmission electron microscopy and its dissociation in the presence of sodium dodecyl sulfate (SDS) was investigated using polyacrylamide gel electrophoresis. The shape of the chlorocruorin is that of a two-tiered hexagon with a vertex-to-vertex diameter of 29.0-29.5 nm and a height of 19.0-19.7 nm: it appears to be smaller by 5-10% relative to several annelid extracellular hemoglobins examined by scanning transmission electron microscopy. The quaternary structure of the chlorocruorin appears to be sensitive to Ca(II) concentration; dissociation fragments of the whole molecule were observed, consisting of octamers an dimers of one-twelfth subunits. The unreduced chlorocruorin dissociated into two subunits with estimated molecular masses of 23 000 (1) and 60 000 (2); the reduced chlorocruorin dissociated into subunits with estimated molecular masses of 13 000 (I), 14 000 (II) and 30 000 (III). SDS-polyacrylamide gel electrophoresis of reduced subunits 1 and 2 showed that subunit 1 corresponded to subunit III and that subunit 2 dissociated to subunits I and II. Densitometry of the polyacrylamide gels indicates that 85-90% of the Myxicola chlorocruorin consists of disulfide-bonded tetramers of polypeptide chains of about 15 000. Such a pattern of subunit aggregation has not been observed previously in annelid extracellular hemoglobins and chlorocruorins.
Animals↗
Preparation and characterization of monoclonal antibodies to the extracellular hemoglobin of Lumbricus terrestris.
Murine monoclonal antibodies to the extracellular hemoglobin of Lumbricus terrestris were prepared by a modification of the method of Kohler and Milstein. 224 hybridomas were found to produce antibodies which bound to the hemoglobin; they were tested for binding to the four subunits of the hemoglobin: M (chain I, 16 kDa), D1 (chain V, 31 kDa), D2 (chain VI, 37 kDa) and T (50 kDa), a disulfide-bonded trimer of chains II, III and IV, each of about 17 kDa. 150 hybridomas bound to all four subunits and 40 hybridomas bound to various combinations of subunits. The remaining 34 hybridomas combined only with the hemoglobin. The twelve hybridomas obtained after subculturing and cloning were tested for their binding to the two fractions II and III, consisting of subunits D1 + D2 + T and M, respectively, obtained by dissociation at pH 9.5 and at pH 4.0 and to the reassociated whole molecules, obtained subsequent to return to neutral pH. Eight hybridomas which combined only with the hemoglobin also combined with all the reassociated molecules but not with any of the fractions: these monoclonal antibodies probably recognize conformation-dependent antigenic sites that are present only in the hexagonal bilayer structure characteristic of the native and reassociated hemoglobin molecules. Of the remaining four hybridomas, two bound to subunit T and two combined with subunits T and D2; they also combined with the reassociated molecules and with the fractions II. In addition, the hybridomas did not bind to the hemoglobins of Tubifex, Limnodrilus, Arenicola, Tylorrhynchus and Macrobdella or to the chlorocruorins of Myxicola and Eudistylia.
Amino Acids↗
Acid-assisted anion interaction with deoxyhemerythrin.
The interaction of N3-, CNO- and F- with deoxyhemerythrin was monitored from pH 6 to 9 and 3 degrees C to 25 degrees C at an ionic strength 0.5 M (Na2SO4) by using competition with O2. A proton is involved in forming the adduct and is not lost from the protein even at pH values as high as 9. Thermodynamic and kinetic parameters for the interaction of each anion are obtained. It is considered that the proton is introduced as the acid HX and the corresponding parameters for the reaction of HX with deoxyhemerythrin are calculated. These are compared with those for the O2 reaction with deoxyhemerythrin. The adducts are remarkably inert and have dissociation half-lives ranging from 7 s (N3-) to 70 s (CNO- and F-) at 25 degrees C. This stability is ascribed to protonation of a bridged hydroxy group or even bridge-breakage.
Acids↗
CD studies on the reversed heme orientation in monomeric Glycera dibranchiata hemoglobins.
Circular dichroism spectra of three monomeric components of Glycera dibranchiata hemoglobins are reported. Contrary to what is found for most hemoglobins and myoglobins, G. dibranchiata hemoglobins display largely negative dichroic spectra in the Soret region. Independent NMR measurements have shown that the same monomeric hemoglobin components contain the heme moiety predominantly (greater than 85%) oriented in a reversed way with respect to the orientation which occurs in most hemoglobins and myoglobins. On the basis of these independent NMR studies, and also of previous data on other invertebrate hemoproteins, a correlation appears evident between reversed heme orientation in hemoglobins and negative ellipticity in the Soret CD spectrum. This represents a simple tool to evaluate this aspect of heme asymmetric environment.
Animals↗
The heterogeneity of the polymeric intracellular hemoglobin of Glycera dibranchiata and the cDNA-derived amino acid sequence of one component.
The erythrocytes of the marine polychaete Glycera dibranchiata contain a number of different, single-chain hemoglobins, some of which self-associate into a 'polymeric' fraction. An oligodeoxynucleotide probe was synthesized based on partial amino acid sequences determined by chemical methods, and used to screen a cDNA library constructed from the poly(A+)mRNA of Glycera erythrocytes (Simons, P.C. and Satterlee, J.D. (1989) Biochemistry 28, 8525-8530). The longest positive inserts found were sequenced using the dideoxy nucleotide chain termination method. One complete clone was obtained: clone 5A, 816 bases long, contained 59 bases of 5'-untranslated RNA, an open reading frame of 441 bases coding for 147 amino acids and a 3'-untranslated region of 316 bases. The derived amino acid sequence of Glycera globin P1 was in agreement with the partial amino acid sequences obtained by chemical methods. Three additional inserts obtained in the screening were also sequenced: the inferred amino acid sequences proved to be partial globin sequences which were different from each other and from the sequence of P1. Thus, the 'polymeric' fraction of the intracellular hemoglobin of Glycera probably consists of at least four different globin chains much like the 'monomeric' fraction. Comparison of the 'polymeric' sequence with the two known 'monomeric' sequences, M-II and M-IV, shows that they share 54 identical residues. At 74 positions, the identical residues in M-II and M-IV differ from the corresponding residue in P1, including at E-7, where P1 has a distal His, in contrast to Leu in M-II and M-IV. The alignment of Bashford et al. ((1987) J. Mol. Biol. 196, 199-216) and their templates were used to examine the principal differences between the two types of Glycera globin sequences. They appear to consist of uncommon surface amino acid residues at positions C6 (Phe vs. Ala), E10 (Val vs. Lys), E17 (Lys vs. Val), G1 (Arg vs. Lys), G10 (Met vs. Ala) and H5 (Arg vs. Lys). One or more of these residues could be responsible for the self-association exhibited by the 'polymeric' Glycera globins.
Amino Acid Sequence↗
Myohemerythrin from the sipunculid, Phascolopsis gouldii: purification, properties and amino acid sequence.
Two previously unknown isoforms, labelled iso I and iso II, of the oxygen-carrying protein, myohemerythrin, have been isolated from carcasses of the sipunculid worm, Phascolopsis gouldii. The two isoforms have non-identical N-terminal amino acid sequences and slightly different absorption spectra in the met form. Far-ultraviolet circular dichroism shows that iso I contains approximately 69% alpha-helix. The complete amino acid sequence for iso I was obtained. The molecular weight calculated from this amino acid sequence and including the active site Fe-O-Fe unit, is 13,829. All of the physical and chemical properties of iso I noted above, including the amino acid sequence, are very similar to those of T. zostericola myohemerythrin. Except for the amino acid sequence, these properties are also very similar to that of a subunit in hemerythrin, the octameric analog found in hemerythrocytes. Only 58 of the 113 residues in P. gouldii hemerythrin are conserved in iso I. Sequence comparisons were used to help identify residues responsible for maintaining the common tertiary and diiron site structures in hemerythrin and myohemerythrin. The seven iron ligand residues previously identified in crystal structures of hemerythrin and myohemerythrin are conserved in iso I. However, none of the ten residue pairs previously identified as engaging in direct salt-bridge or hydrogen bond interactions between subunits in the hemerythrin octamer are conserved in iso I.
Amino Acid Sequence↗
Primary structure of a constituent polypeptide chain of the chlorocruorin from Sabellastarte indica.
A 16 kDa polypeptide chain (chain E) was isolated from the giant extracellular chlorocruorin from the polychaete Sabellastarte indica by reverse-phase chromatography, and the N-terminal 19 amino-acid residues was determined by an automated protein sequencer. The cDNA of Sabellastarte chain E was amplified by polymerase chain reaction (PCR), and the complete nucleotide sequence of 1205 bp was determined. The open reading frame is 498 nucleotides in length and encodes a protein with 165 amino-acid residues. Comparison of the cDNA-derived amino-acid sequence with the protein sequence shows that Sabellastarte chain E has a signal peptide of 16 residues at the N-terminus, the mature protein consisting of 149 amino-acid residues with a calculated molecular mass of 16636 Da. The amino-acid sequence of Sabellastarte chain E shows 42-49% sequence identity with the corresponding chains of the giant hemoglobins from Tylorrhynchus (polychaete, Annelida), Lumbricus (oligochaete, Annelida), Lamellibrachia (Vestimentifera) and Oligobrachia (Pogonophora). Thus, we conclude that chlorocruorin with chlorocruorohaem falls into the 'hemoglobin/myoglobin family'. This is the first complete sequence of a globin polypeptide chain of a chlorocruorin.
Amino Acid Sequence↗
Iron ligand recognition by monomeric hemoglobins.
Binding affinities of monomeric Glycera dibranchiata hemoglobin for some anions and heterocyclic amines, including imidazoles, pyrazole, triazole and tetrazole have been evaluated and compared with those of sperm whale and horse heart myoglobin. The proteins' affinities for substituted heterocyclic amines are strongly influenced by the steric bulk and flexibility of the aromatic ring. The ligand coordination mode depends on the heme oxidation state, iron(III) amine adducts being more stable than the iron(II) adducts, the higher affinities of stronger Brønsted-Lowry bases reflecting their essentially sigma-donor character. The bifunctional molecule morpholinoethylisocyanide acts as a redox-state-dependent ambidentate ligand, binding as an N-donor to iron(III), but as a C-donor to iron(II). pH-Dependences of the ESR and optical spectra of the azole adducts reveal iron-linked ionisations and spin-equilibria in the heme pocket. Enthalpy and entropy changes for the binding process were estimated for several ligands, and mutually compensatory behaviour is observed globally for delta H degree and delta S degree. At the compensation temperature theta, the binding affinities of monomeric Glycera dibranchiata hemoglobin and sperm whale myoglobin are similar and associated with free energy changes delta G degree (theta) approximately -9 +/- 1 kJ mol-1 for the heterocyclic and anionic ligands.
Animals↗
Authentic FMRFamide is present in the polychaete Nereis virens.
The tetrapeptide FMRFamide is but one member of a large family of invertebrate neuropeptides which includes another tetrapeptide, FLRFamide, and several longer peptides terminating in one or the other of these tetrapeptide sequences. These peptides have been isolated from both molluscs and arthropods, but so far not one has been isolated from an annelid. Since the annelid worms are believed to share a common ancestor with molluscs and arthropods, they should contain FMRFamide-like peptides. We found two immunoreactive peaks in Nereis virens, but microsequencing and fast atom bombardment mass spectrometry revealed that they represent only one native peptide, FMRFamide. (The other peak is its methionyl sulfoxide derivative.) Each worm contained only 100 to 600 fmols of peptide, which is at least 10-100 times less than the levels in molluscs. Our identification of a tetrapeptide, and only a tetrapeptide, in this worm suggests that the tetrapeptides are the more ancient members of the family, and were probably present in the common ancestors of the annelids, arthropods, and molluscs.
Amino Acid Sequence↗
Stress proteins in the polychaete annelid Nereis diversicolor induced by heat shock or cadmium exposure.
We have exposed the polychaete annelid Nereis diversicolor to heat shock or cadmium. Two-dimensional electrophoresis and fluorography techniques indicated the synthesis by the worms of at least 15 stress proteins including the universal one referred to as 'stress 70' and a lot of low molecular weight (LMW) proteins. 'Stress 70', synthesized by Nereis diversicolor in response to both stressors, appeared on fluorograms as an array of three charge isomers. We observed that most of the LMW stress proteins built up in response to heat shock were different from those observed after cadmium exposure. Furthermore, Nereis, which resists high levels of cadmium, did not appear to synthesize metallothioneins, small proteins known to prevent cellular damage by sequestering toxic metal ions. As no cadmium-binding proteins were visualized on fluorograms, the mechanism by which Nereis resists cadmium injury remains to be disclosed.
Animals↗