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A fuzzy logic approach to analyzing gene expression data.

We have developed a novel algorithm for analyzing gene expression data. This algorithm uses fuzzy logic to transform expression values into qualitative descriptors that can be evaluated by using a set of heuristic rules. In our tests we designed a model to find triplets of activators, repressors, and targets in a yeast gene expression data set. For the conditions tested, the predictions made by the algorithm agree well with experimental data in the literature. The algorithm can also assist in determining the function of uncharacterized proteins and is able to detect a substantially larger number of transcription factors than could be found at random. This technology extends current techniques such as clustering in that it allows the user to generate a connected network of genes using only expression data.

Algorithms↗

Decision tables and logic in decision analysis.

Unmanageable bushy decision trees result when a decision analysis involves several investigations. They can be simplified for riskless tests by deriving the maximum expected utility decision table for the problem as an intermediate step. This table can be logically summarized as Boolean expressions involving the tests. A minimum-cost testing sequence may then be found by manipulation of the Boolean formulas. The relationship between the resulting decision criteria and the receiver operating characteristic is shown.

Decision Theory↗

Revision of diagnostic logic using a clinical database.

Statistical pattern-recognition techniques have been frequently applied to the problem of medical diagnosis. Sequential Bayesian approaches are appealing because of the possibility of generating the underlying sensitivities, specificities, and prevalence statistics from the estimates of medical experts. The accuracy of these estimates and the consequences of inaccuracies carry implications for the future development of this type of system. In an effort to explore these subjects, the authors used statistics derived from a clinical database to revise the diagnostic logic in a Bayesian system for generating a differential diagnostic list. Substantial changes in estimated a priori probabilities, sensitivities, and specificities were made to correct for significant under- and overestimations of these values by a group of medical experts. The system based on the derived values appears to perform better than the original system. It is concluded that the statistics used in a Bayesian diagnostic system should be derived from a database representative of the patient population for which the system is designed.

Bayes Theorem↗

Logics of delusion.

Delusion represents an exceptional test case for the principal categories of common sense and philosophical thought, such as 'reason', 'truth' and 'reality'. Via an engagement with the legacy of Freud and the most discussed results of twentieth-century psychiatry, my aim will be to analyse its paradoxical forms and to shed light on the logics that underlie and orient its specific modalities of temporalization, conceptualization and argumentation. Delusion, then, has traditionally been presented as synonymous with irrationality (absurdity, groundlessness, error, chaos), whereas by contrast its mirror image, reason, has been defined in terms of evidence, demonstrability, truth and order. I will analyse and contrast their paradoxical definitions.

Delusions↗

Specification and misspecification of theoretical foundations and logic models for health communication campaigns.

While increasingly widespread use of behavior change theory is an advance for communication campaigns and their evaluation, such theories provide a necessary but not sufficient condition for theory-based communication interventions. Such interventions and their evaluations need to incorporate theoretical thinking about plausible mechanisms of message effect on health-related attitudes and behavior. Otherwise, strategic errors in message design and dissemination, and misspecified campaign logic models, insensitive to campaign effects, are likely to result. Implications of the elaboration likelihood model, attitude accessibility, attitude to the ad theory, exemplification, and framing are explored, and implications for campaign strategy and evaluation designs are briefly discussed. Initial propositions are advanced regarding a theory of campaign affect generalization derived from attitude to ad theory, and regarding a theory of reframing targeted health behaviors in those difficult contexts in which intended audiences are resistant to the advocated behavior or message.

Adolescent↗

A conceptual review of decision making in social dilemmas: applying a logic of appropriateness.

Despite decades of experimental social dilemma research, "theoretical integration has proven elusive" (Smithson & Foddy, 1999, p. 14). To advance a theory of decision making in social dilemmas, this article provides a conceptual review of the literature that applies a "logic of appropriateness" (March, 1994) framework. The appropriateness framework suggests that people making decisions ask themselves (explicitly or implicitly), "What does a person like me do in a situation like this? " This question identifies 3 significant factors: recognition and classification of the kind of situation encountered, the identity of the individual making the decision, and the application of rules or heuristics in guiding behavioral choice. In contrast with dominant rational choice models, the appropriateness framework proposed accommodates the inherently social nature of social dilemmas, and the role of rule and heuristic based processing. Implications for the interpretation of past findings and the direction of future research are discussed.

Communication↗

Fuzzy logic and maximum a posteriori-based image restoration for confocal microscopy.

We propose a maximum a posteriori image restoration approach to 3D confocal microscopy. The image field is suitably modeled as a Markov random field, resulting in a Gibbs distributed image. A fuzzy-logic-based potential is employed in the Gibbs prior. Unlike other potentials, the fuzzy potential distinguishes intensity variation due to genuine edges and noise. The proposed approach has generated artifact-free restored confocal microscopy images.

Algorithms↗

On the logic of psychoanalytic theory.

Psychoanalytic theory shows some specific features and problems. It exists in a number of variations, according to different schools as well as cultural and subcultural conditions, with different understandings even of core concepts. Instead of producing definite knowledge, results remain uncertain. They vary in use and imply a permanent reworking of ideas and conceptions. This is the effect of the kind of theory psychoanalysis has to use. Since psychodynamics are a special kind of heterogeneous, changing, always different, emergent--in a word, autopoietic--reality, psychoanalysis cannot use the methods of a denotative theory (algorithmic reduction leading to strictly defined and formulated calculations) but has to use connotative theories. Connotative theories use open concepts which provide an active and flexible access to autopoietic reality. They are able to cope with the difference between singularities as well as with the distance between general logic and empirical reality. Problems tied to this possibility are structural fuzziness, a dependence on forms of use, multiple paradigms and difficulties in legitimation and balance of theories. This causes problems of institutionalisation. These problems are not a sign of immaturity but the normal way in which connotative theories appear and develop. They can therefore not be eliminated but only be treated in a better way.

Humans↗

An application of bi-logical theory to the study of psychic change and mourning.

The authors propose that the process of psychic change involves the 'working through' of mourning for the loss of 'theories of life' that are based on narcissistic omnipotent beliefs. These theories need to be changed by other more realistic ones regarding how to resolve the inherent and natural problems of existence. Questioning the 'truth' of these theories of life, as well as the acquisition of the perception of the existence of time, makes up part of the process referred to, and this applies to the analyst in a certain way as much as to the patient. Such problems are lived, re-edited and revised in the transference/countertransference relationship. The authors present a clinical illustration. They explore the concepts of symmetry, asymmetry, homogenization and differentiation in Matte-Blanco's bi-logical theory and propose that these are important to the comprehension of the dynamic of the psychic changes which occur in a non-static analytic process.

Adaptation, Psychological↗

Signal propagation and logic gating in networks of integrate-and-fire neurons.

Transmission of signals within the brain is essential for cognitive function, but it is not clear how neural circuits support reliable and accurate signal propagation over a sufficiently large dynamic range. Two modes of propagation have been studied: synfire chains, in which synchronous activity travels through feedforward layers of a neuronal network, and the propagation of fluctuations in firing rate across these layers. In both cases, a sufficient amount of noise, which was added to previous models from an external source, had to be included to support stable propagation. Sparse, randomly connected networks of spiking model neurons can generate chaotic patterns of activity. We investigate whether this activity, which is a more realistic noise source, is sufficient to allow for signal transmission. We find that, for rate-coded signals but not for synfire chains, such networks support robust and accurate signal reproduction through up to six layers if appropriate adjustments are made in synaptic strengths. We investigate the factors affecting transmission and show that multiple signals can propagate simultaneously along different pathways. Using this feature, we show how different types of logic gates can arise within the architecture of the random network through the strengthening of specific synapses.

Action Potentials↗

[Decision-support guideline in obstetrical nursing: application of fuzzy logic technique].

Fuzzy Logic has been used as an approach for knowledge representation and a technique for modeling Clinical Decision-Support Systems. In considering such technique underutilization for modeling nursing clinical decisions, this essay aims to present general notions about this technique and through it to develop a theoretical formulation of practice guideline to support decision in amniotomy cases for pregnant women in normal labor.

Decision Support Techniques↗

The application of fuzzy logic to the prescription of antithrombotic agents in the elderly.

The prescription of antithrombotic agents in the elderly depends, to certain degree, on the identity of the unique individual elderly patient. This dependence cannot be captured by viewing the patient as belonging to a group, but rather by viewing age in the context of unique individual biology. This context is historical, physiological, psychological, and time- and location-dependent. The group-based approach to patient therapy is found in evidence-based medicine, typified by the large double-blind randomised clinical trial from which clinical recommendations are defined. An alternative approach to capturing the unique context of each patient is based using fuzzy logic and mathematics. In particular, the fuzzy subsethood theorem of Kosko has direct application here. A new measure of clinical efficiency, K, derived from the fuzzy subsethood theorem has redefined the clinical significance of age. In particular, the causal role of age in any one patient's response to therapy is to unique degree for that patient. This is because the causal measure K accounts for the role of known and unknown contextual factors of the patient, most of which are unknown, in defining clinical effect in any specific patient. Thus, we have shown mathematically why 'age', or being 'elderly', is only one factor to be taken into consideration when therapeutic decisions regarding antithrombotic therapy are made in any given patient. This is contrary to the group-based approach of evidence-based medicine, where age has the same therapeutic significance for all patients. This is because any hypothesis of evidence-based medicine is group-based and cannot be extrapolated to the individual patient. Such extrapolation has to be personalized through the expertise of the physician. The physician takes into account all the factors not considered in any therapeutic group-based trial which apply to his specific patient. These considerations take into account past experience with that patient. An example of the effect of age on the patient and his/her therapeutic context is provided which shows how age affects different patients to different degree using the fuzzy causal measure K. The purpose of this exercise is to show that there is mathematical support for the argument that individualization of patient therapy by expert decision has measurable clinical significance. What is different here is that measure stick is not probabilistic but fuzzy-mathematic based.

Aged↗

Fuzzy logic simulation of the testosterone effect on sex differences in Vandenberg-Kuse mental rotation scores.

The relationship between testosterone level and mental rotation was modeled using a fuzzy logical simulation. The fuzzy model of men's and women's testosterone levels and MR scores mapped the input "space" of testosterone to the output "space" of mental rotation. The simulation showed that a single variable (testosterone) can produce a significant difference in output. The model typifies sex difference in distribution of mental rotation scores previously observed experimentally.

Female↗

Item response biases on the logical memory delayed recognition subtest of the Wechsler Memory Scale-III.

We hypothesized that the wording and sequential order of the WMS-III Logical Memory recognition questions may bias subjects toward correct or incorrect responses on specific items. Therefore, we classified each item according to one of three potential sources of bias (yeasaying to proper names, priming of "yes" responses by previous items with similar content, naysaying to unlikely occurrences) and administered the items to 31 subjects who were completely naïve to the story content. The items predicted to have correct endorsement biases were answered correctly at greater than chance frequencies, while items predicted to be biased toward incorrect answers were missed more frequently than expected by chance. The same sources of bias were tested in an independent clinical sample of 36 neurological patients who were administered the WMS-III in the standard manner. In these patients biases appeared robust enough to be detected in the performances of clinical patients during a neuropsychological evaluation. With further research, such biases may provide avenues for detecting malingering.

Adult↗

Are brain-damaged patients inappropriately labeled as malingering using the 21-item Test and the WMS-R Logical Memory Forced Choice Recognition Test.

This study examined the false positive hit rate of the 21-item Test and the WMS-R Logical Memory Forced Choice Recognition Test and compared the relationship between the measures in classifying biased responding/malingering. Of 40 patients referred for comprehensive neuropsychological evaluation, 18 were classified as brain-damaged based on independent neurological or neuroradiological examination. The remaining 22 patients could not be so classified on neurological or neuroradiological evidence and thus served as a medical control group. Findings indicated the brain-damaged group performed more poorly than did the control group across measures, and both groups, on the average, performed markedly better than that required to suggest biased responding. Also, taking both tests together, no individual patient was classified as malingering.

Brain Injuries↗

The effect of emotion on interpretation and logic in a conditional reasoning task.

The effect of emotional content on logical reasoning is explored in three experiments. Theparticipants completed a conditional reasoning task (If p, then q) with emotional and neutral contents. In Experiment 1, existing emotional and neutral words were used. The emotional value of initially neutral words was experimentally manipulated in Experiments 1B and 2, using classical conditioning. In all experiments, participants were less likely to provide normatively correct answers when reasoning about emotional stimuli, compared with neutral stimuli. This was true for both negative (Experiments 1B and 2) and positive contents (Experiment 2). The participants' interpretations of the conditional statements were also measured (perceived sufficiency, necessity, causality, and plausibility). The results showed the expected relationship between interpretation and reasoning. However, emotion did not affect interpretation. Emotional and neutral conditional statements were interpreted similarly. The results are discussed in light of current models of emotion and reasoning.

Adolescent↗

Difference to Inference: teaching logical and statistical reasoning through on-line interactivity.

Difference to Inference is an on-line JAVA program that simulates theory testing and falsification through research design and data collection in a game format. The program, based on cognitive and epistemological principles, is designed to support learning of the thinking skills underlying deductive and inductive logic and statistical reasoning. Difference to Inference has database connectivity so that game scores can be counted as part of course grades.

Decision Making↗

The belief-bias effect in the production and evaluation of logical conclusions.

In this study, we examined whether adult subjects' beliefs regarding the empirical truth of a conclusion affected their production as well as their evaluation of a logical conclusion in a reasoning task. In addition, the relation between the ability to resolve an abstract reasoning problem correctly and the effect of belief-bias was examined. The subjects were given one of four paper-and-pencil reasoning tasks, two of them using an evaluation paradigm, and two of them using a production paradigm. Each paradigm comprised either neutral problems or belief problems. The neutral problems were constructed to be as similar as possible to the belief problems, in order to control for extraneous factors. All four tasks also included an abstract reasoning problem. The results indicate a significant belief-bias effect for both the evaluation and the production tasks. Qualitative analysis indicated that the belief-bias effect was more pervasive in the production condition. In addition, the belief-bias effect was found to exist independently of the subjects' abstract reasoning ability. The results are discussed with reference to a two-stage model, in which belief is used to resolve uncertainties in inferentially produced conclusions.

Adult↗