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Cryptic genetic variation is enriched for potential adaptations.

Cryptic genetic variation accumulates under weakened selection and has been proposed as a source of evolutionary innovations. Weakened selection may, however, also lead to the accumulation of strongly deleterious or lethal alleles, swamping the effect of any potentially adaptive alleles when they are revealed. Here I model variation that is partially shielded from selection, assuming that unconditionally deleterious variation is more strongly deleterious than variation that is potentially adaptive in a future environment. I find that cryptic genetic variation can be substantially enriched for potential adaptations under a broad range of realistic parameter values, including those applicable to alternative splices and readthrough products generated by the yeast prion [PSI+]. This enrichment is dramatically stronger when multiple simultaneous changes are required to generate a potentially adaptive phenotype. Cryptic genetic variation is likely to be an effective source of useful adaptations at a time of environmental change, relative to an equivalent source of variation that has not spent time in a hidden state.

Adaptation, Physiological↗

Linear transduction of natural stimuli by dark-adapted and light-adapted rods of the salamander, Ambystoma tigrinum.

1. We examined signal, noise and response properties of salamander rod photoreceptors by measuring: (a) the circulating current of rods which were adapted to darkness and to a wide range of backgrounds; (b) contrasts of natural environments; (c) the effect of adaptation on the linear response range of rods; and (d) the behaviour of rods responding to dynamically modulated stimuli having a range of contrasts found in nature. 2. In the dark, the circulating current contained two noise components analogous to those described in toad. A discrete noise component consisted of events occurring at a rate of 1 event per 32 s (21 degrees C) and had a variance of 0.036 pA2. A continuous noise component contributed 0.022 pA2 to the dark current, roughly equal to the discrete noise variance. 3. Exposure to a wide range of steady backgrounds (suppressing up to 80% of the circulating current), elicited a sustained fluctuating photocurrent having a power spectrum which resembled those of single photon responses and was consistent with the linear summation of single photon events; this indicates that the primary source of noise in the current is caused by the light. 4. Eighty-nine per cent of the contrasts (C) measured in natural environments had magnitude of C < 50%, where C = magnitude of I - Imean/magnitude of Imean. The linear response range elicited by brief flashes expanded with brighter backgrounds, well-encompassing flash contrasts of 100%. 5. Dynamically modulated stimuli and incremental flashes having contrasts similar to those in natural scenes elicited small currents which deviated by a few picoamps about the mean and the transfer functions computed from each type of stimulus-response pair closely corresponded to one another. These results indicate that in natural environments, rods behave as linear small-signal transducers of light.

Adaptation, Ocular↗

Reference ranges for thyrotropin in the serum of full-term neonates--compared with the ranges for full-term neonates with various post-partal adaptation disorders, and premature neonates.

The "IMx hTSH ultrasensitive test" from Abbott Laboratories is a new method for the determination of thyrotropin. Its introduction for the purpose of hypothyreosis screening led to the present investigation of the reference ranges in full-term and premature neonates. In a total of 1712 healthy neonates, the reference range for serum thyrotropin on the 5th day post partum was 0.4-9.05 mU/l (median value 1.90 mU/l). In contrast, 64 full-term neonates with various post-partal adaptation disorders showed a significantly lower serum thyrotropin concentration on the 5th day post partum (0.14-6.39 mU/l; median value 1.60 mU/l). Serum thyrotropin was also determined on the 7th and 14th day post partum in 131 premature neonates with birth-weights below 2500 g. In the birth-weight range 1500- < 2500 g, the median values for serum thyrotropin were 2.35 and 2.12 mU/l, respectively. A negative correlation (r = -0.3019) was found between the birth-weight and the serum thyrotropin concentration on the 14th day post partum. In two premature neonates with birth-weights less than 800 g, the serum thyrotropin concentrations were conspicuously high (18.6 and 28.0 mU/l) on the 14th day post partum.

Birth Weight↗

Seed and pollen flow in expanding a species' range.

The distinct processes of gene flow via seeds and pollen in hermaphrodite plants provide a biological basis for interpreting their different roles in expanding a species' range. A species' range is primarily expanded through the colonization process by seed dispersal and followed by the joint effects of both seed and pollen flow. Here we examined the effects of seed and pollen flow on shaping a species' distribution in one-dimensional space. Our results demonstrate that pollen flow can enhance range expansion when immigrating genes are adaptive to recipient populations, but can shrink a species' range when immigrating genes are maladaptive. The incompletely purging of maladaptive genes from immigrating pollen grains at the gametophyte stage can reinforce the biological barrier to range expansion. The linkage disequilibria attained by immigrating seeds and pollen grains indirectly amplify the effects of the reaction component and further limit a species' range. The cumulative effect from multiple loci each with a small effect can be substantial on altering a species' range when these genes are maladaptive. These theoretical predictions can help understand the role of pollen flow that is incapable of colonizing new habitats in range expansion.

Gene Flow↗

Light-induced changes of sensitivity in Limulus ventral photoreceptors.

The responses of Limulus ventral photoreceptors to brief test flashes and to longer adapting lights were measured under voltage clamp conditions. When the cell was dark adapted, there was a range of energy of the test flashes over which the peak amplitude of the responses (light-induced currents) was directly proportional to the flash energy. This was also true when test flashes were superposed on adapting stimuli but the proportionality constant (termed peak currently/photon) was reduced. The peak current/photon was attenuated more by brighter adapting stimuli than by less bright adapting stimuli. The peak current/photon is a measure of the sensitivity of the conductance-increase mechanism underlying the light response of the photo-receptor. The response elicited by an adapting stimulus had a large initial transient which declined to a smaller plateau. The peak current/photon decreased sharply during the declining phase of the transient and was relatively stable during the plateau. This indicates that the onset of light adaptation is delayed with respect to the onset of the response to the adapting stimulus. If the adaptational state just before the onset of each of a series of adapting stimuli was constant, the amplitude of the transient was a nearly linear function of intensity. When the total intensity was rapidly doubled (or halved) during a plateau response, the total current approximately doubled (or halved). We argue that the transition from transient to plateau, light-elicited changes of threshold, and the nonlinear function relating the plateau response to stimulus intensity all reflect changes of the responsiveness of the conductance-increase mechanism.

Adaptation, Ocular↗

Reinnervation of glabrous skin in baboons: properties of cutaneous mechanoreceptors subsequent to nerve transection.

1. A total of 758 fibers were isolated from previously transected and repaired ulnar nerves of five baboons. These fibers were compared to fibers from normal and previously crushed nerves studied in an earlier experiment. 2. The conduction velocities of the proximal portion of the injured axons dropped below normal, and this reduction persisted until reinnervation appeared nearly complete. 3. The receptive-field organization and response characteristics of 79 cutaneous afferent fibers serving the glabrous skin were studied in detail and compared to cutaneous afferent fibers of normal and previously crushed nerves studied earlier. 4. Initially, receptive fields were small and irregular, and often one fiber served several distinct skin regions. Ten months later, most of these abnormalities were no longer apparent. 5. Thresholds for single impulses elicited by von Frey hairs remained elevated for up to 4 mo after the receptive field reappeared, but then dropped abruptly to a near-normal range. 6. After reinnervation, rapidly adapting fibers displayed tuning curves characteristic of their submodality, but thresholds were elevated and only began to approach the normal range 6 mo after reinnervation. 7. After reinnervation, slowly adapting fibers displayed stimulus-response curves with elevated thresholds and they tended to saturate at lower stimulus intensities than normal fibers. 8. When compared to the return of function following a crushing injury, axons that had been transected displayed a slower time course for the return to normal values of conduction velocity and threshold. Receptive-field organization also remained abnormal for a longer time period. 9. These data support the hypotheses that a) breaking the continuity of the Schwann cells and extracellular matrix that occurs during transection but not during crush is a major factor leading to errors of axonal regeneration in the distal stump, b) submodality specificity is a property of the regenerating axon, and c) regenerating axons are influenced by an internal or external cue, causing them to form and maintain a single relatively homogeneous receptive field.

Adaptation, Physiological↗

Peripheral neural representation of the spatial frequency of a grating moving across the monkey's finger pad.

1. Responses in mechanoreceptive afferent fibres innervating the monkey's finger pads were examined when a ridged surface ("grating') was moved across the fibre's receptive field with a specified velocity and applied force. 2. The stimulus feature represented in single fibre responses was the temporal frequency of the moving grating (stimulus temporal frequency = velocity of moving surface/spatial period); information about the spatial period of the grating was represented equivocally. 3. Peripheral neural representation of the grating's spatial period (or spatial frequency) depended on information signalled by the responding fibre population rather than by individual fibres. 4. The three mechanoreceptive fibre populations responded differentially to a grating moving across the finger pad. Slowly adapting fibres coded best those stimulus combinations with a stimulus temporal frequency in the range 20-60 Hz, rapidly adapting fibres coded best those with frequencies of 60-200 Hz, and Pacinian fibres best defined those stimuli with a high temporal frequency (100-300 Hz). 5. Applying the moving grating to the skin with varying radial forces in the range 20-60 g wt. did not greatly modify the pattern of discharge in the responding fibre populations.

Action Potentials↗

Growth in amplitude of the human cone electroretinogram with light adaptation.

The human cone electroretinogram gradually increases in amplitude an average of 75% (range 23 to 157%) during light adaptation, over a period of approximately 20 min. This increase involves both the a- and b-wave components of this response, and both waves follow a similar time course, implying that the photoreceptors themselves are responsible for the effect. The phenomenon occurs with suprathreshold, but not with threshold, levels of stimulation, and the stronger the test light, the greater the effect. An increase in the intensity of the adapting light shortens the time course of the ERG response, measured as b-wave implicit time, but this occurs almost immediately, and the implicit time then remains constant during the slow increase in response amplitude. The stronger the background adapting light, the smaller is the ERG amplitude, but the percentage growth (or rate of recovery) is unchanged. This slow increase in amplitude is thought to reflect the redepolarization of the cones, after their initial hyperpolarization to an adapting field. It does not reflect the d.c. potential of the eye (the EOG). It is essential to control this phenomenon in any studies of the human cone ERG, in order to minimize variability.

Adaptation, Physiological↗

Insulin antibodies before and 1 year after the change-over from U40 to U100 insulin preparations in Belgium.

In 1991, Belgium realized, on a national level, a change-over from U40 to U100 insulin. We took advantage of this evolution to investigate the consequences of changing the concentration of insulin. The patients' weight, daily insulin dosis, insulin binding-capacity of plasma and glycated hemoglobin HbA1c were registered before, and after the change of concentration. Overall, none of these parameters underwent an obvious change, except for the percentage of insulin binding that significantly decreased after the adaptation. Especially in the range of 40% or more insulin binding, the decrease becomes very pronounced. In conclusion, changing the insulin concentration from U40 to U100, did not lead to any harmful clinical consequence. On the contrary, a positive influence of this adaptation, in terms of decreased amount of insulin antibodies was suggested. Probably this decrease is not clinically relevant, since neither the glycated hemoglobin, nor the total daily insulin dose underwent a similar change.

Adult↗

[Vertical vergence adaptation in cases of superior oblique palsy].

PURPOSE: To investigate the characteristics of vertical adaptation (VA) in superior oblique muscle palsy (SOP). SUBJECTS AND METHODS: VA was examined in 15 patients with unilateral congenital SOP, 7 patients with unilateral acquired SOP, and 35 normal volunteers. An adaptive change in the fusion-free ocular alignment, VA, was measured with a computer-aided mirror haploscope. The fusion-free ocular alignment was measured before inserting a 3 prismdiopter vertical prism, immediately after inserting the prism, and at 10 minutes and 30 minutes after insertion. We investigated VA gain, age, vertical fusional range, response of prism adaptation test (PAT), and superior oblique muscle atrophy in magnetic resonance imaging (MRI). RESULTS: The VA gain (mean +/- standard deviation, %) at 30 minutes in congenital, acquired, and normal groups was 86 +/- 53, 34 +/- 23 and 58 +/- 16, respectively. The mean of the VA gains at 30 minutes in the congenital group was greatest, and that in the acquired group was least(p < 0.01). In the congenital group there was a correlation between VA gain and response of PAT (p = 0.02, r = 0.60). The VA gain did not significantly correlate with age, vertical fusional range, or muscle atrophy. CONCLUSION: The VA gain observed in congenital SOP was greater than that of acquired SOP, and affected the response of PAT.

Adaptation, Ocular↗

%(G+C) variation and prediction by a model of bacterial gene transfer and codon adaptation.

The %(G + C) of bacterial genomes ranges from 25% in Mycoplasma to 75% in Micrococcus. Our model for horizontal gene flow enabled a theoretical study of the adaptation of relative codon frequency to match the pattern of the tRNA set of a new host. This study explored the dynamic relationship of %(G + C) to vectors of relative codon frequency (F(gamma)), relative amino acid coding frequency (F(alpha)), and absolute codon frequency (F(|gamma|)) in chromosomes of nine, fully sequenced bacterial genomes that varied widely in %(G + C). At constant F(alpha), the theoretical maximum average range possible was %(G + C) = 37.4 +/- 0.9%. In simulations of F(gamma) adaptation to a new host following hypothetical gene transfer, we modeled %(G + C) as a function of F(gamma) and F(alpha). The simulation revealed that %(G + C) is dependent on F(gamma) and F(alpha) in an explicit relationship described in this paper. We conclude that (1) F(gamma) and F(alpha) determine %(G + C), and (2) the degree of adaptation of %(G + C) in a transferred gene depends upon the degree of F(gamma) equilibration and the similarity of F(alpha) of the transferred gene to that of the new host.

Base Sequence↗

Infectious properties of human immunodeficiency virus type 1 mutants with distinct affinities for the CD4 receptor.

Recent evidence suggests that primary patient isolates of T-cell-tropic human immunodeficiency virus type 1 (HIV-1 ) have lower affinities for CD4 than their laboratory-adapted derivatives, that this may partly result from tighter gp120-gp41 bonds that constrain the CD4 binding sites of the primary viruses, and that selection for increased CD4 affinity may be the principal factor in laboratory adaptation of HIV-1 (S. L. Kozak, E. J. Platt, N. Madani, F. E. Ferro, Jr., K. Peden, and D. Kabat, J. Virol. 71:873-882, 1997). These conclusions were based on studies with a panel of HeLa-CD4 cell clones that differ in CD4 levels over a broad range, with laboratory-adapted viruses infecting all clones with equal efficiencies and primary T-cell-tropic viruses infecting the clones in proportion to cellular CD4 levels. Additionally, all of the primary and laboratory-adapted T-cell-tropic viruses efficiently used CXCR-4 (fusin) as a coreceptor. To test these conclusions by an independent approach, we studied mutations in the laboratory-adapted virus LAV/IIIB that alter the CD)4 binding region of gp120 and specifically reduce CD4 affinities of free gp 120 by 85 to 98% (U. Olshevsky et al., J. Virol. 64:5701-5707, 1990). These mutations reduced virus titers to widely varying extents that ranged from severalfold to several orders of magnitude and converted infectivities on the HeLa-CD4 panel from CD4 independency to a high degree of CD4 dependency that resembled the behavior of primary patient viruses. The relative infectivities of the mutants correlated closely with their sensitivities to inactivation by soluble CD4 but did not correlate with the relative CD4 affinities of their free gp120s. Most of the mutations did not substantially alter envelope glycoprotein synthesis, processing, expression on cell surfaces, incorporation into virions, or rates of gp120 shedding from virions. However, one mutation (D457R) caused a decrease in gp160 processing by approximately 80%. The fact that several mutations increased rates of spontaneous viral inactivation (especially D368P) suggests that HIV-1 life spans may be determined by structural stabilities of viral envelope glycoproteins. All of the wild-type and mutant viruses were only slowly and inefficiently adsorbed onto cultured CD4-positive cells at 37 degrees C, and the gradual declines in viral titers in the media were caused almost exclusively by spontaneous inactivation rather than by adsorption. The extreme inefficiency with which infectious HIV-1 is able to infect cultured susceptible CD4-positive cells in standard assay conditions casts doubt on previous inferences that the vast majority of retrovirions produced in cultures are noninfectious. Apparent infectivity of T-cell-tropic HIV-1 in culture is limited by productive associations with CD4 and is influenced in an interdependent manner by CD4 affinities of viral gp120-gp41 complexes and quantities of cell surface CD4.

Acquired Immunodeficiency Syndrome↗

Myosin filament assembly in an ever-changing myofilament lattice of smooth muscle.

A major development in smooth muscle research in recent years is the recognition that the myofilament lattice of the muscle is malleable. The malleability appears to stem from plastic rearrangement of contractile and cytoskeletal filaments in response to stress and strain exerted on the muscle cell, and it allows the muscle to adapt to a wide range of cell lengths and maintain optimal contractility. Although much is still poorly understood, we have begun to comprehend some of the basic mechanisms underlying the assembly and disassembly of contractile and cytoskeletal filaments in smooth muscle during the process of adaptation to large changes in cell geometry. One factor that likely facilitates the plastic length adaptation is the ability of myosin filaments to form and dissolve at the right place and the right time within the myofilament lattice. It is proposed herein that formation of myosin filaments in vivo is aided by the various filament-stabilizing proteins, such as caldesmon, and that the thick filament length is determined by the dimension of the actin filament lattice. It is still an open question as to how the dimension of the dynamic filament lattice is regulated. In light of the new perspective of malleable myofilament lattice in smooth muscle, the roles of many smooth muscle proteins could be assigned or reassigned in the context of plastic reorganization of the contractile apparatus and cytoskeleton.

Actin Cytoskeleton↗

Intensive housing: the last straw for pigs?

The concept of coping can be used to relate the environmental conditions provided for livestock to their responses--their productivity and their welfare. Pigs are "ecological generalists" and hence are "designed" to cope with a wide variety of environmental conditions. They, however, show clear limits to their adaptability both in terms of the space they require and the pen materials they can endure without injury. Even where they adapt to a wide range of conditions, there often is a particular environment that gives optimum performance. Examples of temperature requirements and feeding facilities are discussed. The process of coping is shown to impose a biological "cost" in some instances and, although a pig has adapted to a specific environment, questions still remain concerning whether keeping a pig in that environment is justifiable.

Adaptation, Physiological↗

Expansion of growth substrate range in Pseudomonas putida F1 by mutations in both cymR and todS, which recruit a ring-fission hydrolase CmtE and induce the tod catabolic operon, respectively.

Pseudomonas putida F1 can assimilate benzene, toluene and ethylbenzene using the toluene degradation pathway, and can also utilize p-cymene via p-cumate using the p-cymene and p-cumate catabolic pathways. In the present study, P. putida F1 strains were isolated that were adapted to assimilate new substrates such as n-propylbenzene, n-butylbenzene, cumene and biphenyl, and the molecular mechanisms of genetic adaptation to an expanded range of aromatic hydrocarbons were determined. Nucleotide sequence analyses showed that the selected strains have mutations in the cymR gene but not in todF gene. The impairment of the repressor CymR by mutation led to the constitutive expression of CmtE, a meta-cleavage product hydrolase from the cmt operon. This study also showed that CmtE has a broad range of substrates and can hydrolyse meta-cleavage products formed from biphenyl and other new growth substrates via the toluene degradation pathway. However, the artificially constructed strain P. putida F1(cymR : : Tc(r)) and a recombinant P. putida F1, which expressed CmtE constitutively, could not grow on the new substrates. The adapted strains possess the tod operon, which is induced by new growth substrates that are poor inducers of wild-type P. putida F1. When the todS gene from the adapted strains was introduced in a trans manner to P. putida F1(cymR : : Tc(r)), the resulting recombinant strains were able to grow on biphenyl and other new substrates. This finding indicates that the TodS sensor was altered to recognize these substrates and this conclusion was confirmed by nucleotide sequence analyses. Amino acid substitutions were found in the regions corresponding to the receiver domain and the second PAS domain and their boundaries in the TodS protein. These results showed that P. putida F1 adapted strains capable of growth on n-propylbenzene, n-butylbenzene, cumene and biphenyl possess mutations to employ CmtE and to induce the tod catabolic operon by the new growth substrates.

Adaptation, Physiological↗

Attention and apparent motion.

Two dissociations between short- and long-range motion in visual search are reported. Previous research has shown parallel processing for short-range motion and apparently serial processing for long-range motion. This finding has been replicated and it has also been found that search for short-range targets can be impaired both by using bicontrast stimuli, and by prior adaptation to the target direction of motion. Neither factor impaired search in long-range motion displays. Adaptation actually facilitated search with long-range displays, which is attributed to response-level effects. A feature-integration account of apparent motion is proposed. In this theory, short-range motion depends on specialized motion feature detectors operating in parallel across the display, but subject to selective adaptation, whereas attention is needed to link successive elements when they appear at greater separations, or across opposite contrasts.

Adaptation, Ocular↗

Perceived control and adaptation in elder caregivers: development of an explanatory model.

Perceived control has been implicated in the adaptation and well-being of older adults and may be especially relevant to elder caregivers. However, few studies have investigated perceived control within the individual's unique personal, social, and environmental context. This study tested a model representing the hypothesis that perceived control, defined as the perception that salient or valued aspects of one's life are manageable, mediates the objective and subjective aspects of caregiving and caregiver adaptation. Sixty elderly caregivers ranging in age from sixty to eighty-four (M = 69.4) were interviewed. Perceived control had a direct relationship with life satisfaction and depression, and an indirect relationship with subjective symptoms of stress. Wishful thinking coping behavior had a negative relationship with all adaptation variables. Findings are discussed in relation to further refinement and development of a theoretical approach to caregiver research and intervention studies in light of the obtained path model.

Adaptation, Psychological↗