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PubMed2004

Mapping cone- and rod-induced retinal responsiveness in macaque retina by optical imaging.

PURPOSE: To map the distribution of cone- or rod-induced retinal responsiveness by optical imaging from macaque retina. METHODS: The light reflectance changes in the posterior retina after a flash stimulus in anesthetized rhesus monkeys were measured by a modified fundus camera system equipped with a charge-coupled device (CCD) camera. The response topography of the optical signals was obtained in either light- or dark-adapted conditions. RESULTS: With infrared observation light, the whole posterior pole became darkened after the stimulus. The response topography in light-adapted conditions demonstrated a steep peak of darkening at the fovea, together with the gradual decrease of signal intensity away from the fovea toward the periphery. In dark-adapted conditions, the optical signal showed additional peaks along the circular region surrounding the macula at the eccentricity of the optic disc, together with the central peak at the fovea. A statistically significant positive correlation was obtained between the light reflectance changes in infrared observation light and the focal responses in multifocal electroretinogram (mfERG) at the corresponding retinal locations. CONCLUSIONS: The response topography in the retina, obtained by optical imaging, was consistent with psychophysical cone or rod sensitivity in humans and anatomic cone or rod distribution in humans and macaques. The cone- or rod-induced retinal responsiveness within the posterior pole region was noninvasively recorded within a short recording time.

Animals↗
PubMed1987

Reproducibility of topographic measurements with the optic nerve head analyzer.

We evaluated the reproducibility of optic nerve head contour mapping by the Optic Nerve Head Analyzer with ten recordings and analyses of one eye each in ten normal volunteers and ten analyses of a single recording in three of the eyes. Reproducibility was good for cup-to-disk ratio and neural rim area. Reproducibility was poor for cup volume, which was inversely related to cup size. Instrument and operator error were low for cup-to-disk ratio and neural rim area, but high for cup volume. Subjective comparisons of contour lines from five recordings of six eyes implied good reproducibility of this measurement.

Glaucoma↗
PubMed1999

Topography of contextual modulations mediated by short-range interactions in primary visual cortex.

Neurons in primary visual cortex (V1) respond differently to a simple visual element presented in isolation from when it is embedded within a complex image. This difference, a specific modulation by surrounding elements in the image, is mediated by short- and long-range connections within V1 and by feedback from other areas. Here we study the role of short-range connections in this process, and relate it to the layout of local inhomogeneities in the cortical maps of orientation and space. By measuring correlation between neuron pairs located in optically imaged maps of V1 orientation columns we show that the strength of local connections between cells is a graded function of lateral separation across cortex, largely radially symmetrical and relatively independent of orientation preferences. We then show the contextual influence of flanking visual elements on neuronal responses varies systematically with a neuron's position within the cortical orientation map. The strength of this contextual influence on a neuron can be predicted from a model of local connections based on simple overlap with particular features of the orientation map. This indicates that local intracortical circuitry could endow neurons with a graded specialization for processing angular visual features such as corners and T junctions, and this specialization could have its own functional cortical map, linked with the orientation map.

Animals↗
PubMed1985

Development of the chicken oculomotor nucleus: a quantitative study of cresyl violet and colloidal iron stained neurons.

The characteristics of new-born chicken oculomotor neurons have been studied comparatively with adults (four-months), applying both, the Cresyl Violet and Colloidal Iron stain methods. A cytophotometric study has been performed on the neurons, obtaining optical density maps. Afterwards, a statistical study on the nuclear and somatic parameters, and the optical density values, were made. The existence of two nerve-cell types has been proved: clear ones-big, eggshape with nucleus and an obvious nucleolus; and darker ones-smaller, fusiforms, with nucleus and a less perceptible nucleolus. These characteristics of the neuronal-cells are present in new-born and four-month old animals. The ratio is different for each stage: in younger chickens there is a bigger proportion of clear nerve-cells (70%) than dark ones (30%); and in four-month old chickens there is a bigger proportion of dark nerve-cells (95%) than clear ones (5%). During postnatal development, oculomotor nucleus nerve-cells increased the neuronal area 28% in the clear cells and 30% in the dark cells. The optical density histograms for clear cells of one-day old animals and four-month old animals were similar, as were the histograms for both developmental stages of the dark cells. Glycosaminoglycans were shown with the colloidal Iron, there being strong positive reactions on the cell periphery, prolongations, and Golgi apparatus of four-month old specimens. But in the nex-born animals the reaction was weaker, with the maximum intensity on the pericaryon periphery.

Animals↗
PubMed2000

Role of climbing fibers in determining the spatial patterns of activation in the cerebellar cortex to peripheral stimulation: an optical imaging study.

The spatial patterns of activation in the rat cerebellar cortex evoked by ipsilateral face stimulation were mapped using optical imaging based on the pH sensitive dye, Neutral Red. The aims of the study were to characterize the optical responses evoked by peripheral stimulation and test the hypothesis that the resultant parasagittal banding is due to climbing fiber activation. In the anesthetized rat Crus I and II of the cerebellar cortex were stained with Neutral Red. Epi-fluorescent changes produced by a train of stimuli (5-10s and 4-20 Hz) to the ipsilateral face were monitored in time using a fast, high resolution charge-coupled device camera. The patterns of activation were quantified using a two-dimensional fast Fourier transform analysis that removed signals with high spatial frequencies and minimized the contribution of horizontal structural elements (i.e. blood vessels). The dominant spatial pattern of activation evoked by face stimulation was that of parasagittal bands. The bands were highly frequency-dependent and were elicited most strongly by stimulus frequencies in the range of 6-8 Hz. There was a large fall-off in the response for frequencies above and below. The optical signal evoked by face stimulation built up over a period of 10s and then gradually decayed. Within a folium the individual parasagittal bands exhibited some frequency and temporal specificity. Stimulation of the contralateral inferior olive also resulted in the activation of parasagittal bands with characteristics similar to the bands evoked by face stimulation, including a preferred stimulus frequency which peaked at 10 Hz. Injection of lidocaine into the contralateral inferior olive blocked the parasagittal bands evoked by ipsilateral face stimulation, while control injections of saline had no effect. The results confirm that a parasagittal banding pattern is a dominant feature of the functional architecture of the cerebellar cortex. The parasagittal banding pattern observed with Neutral Red is due primarily to the activation of climbing fiber afferents. The frequency tuning of the responses, with the preference for peripheral stimuli of 6-8 Hz, is in agreement with previous findings that the inferior olive is inherently rhythmic. These observations support the hypothesis that inferior olivary neurons are dynamically coupled into groups that activate parasagittal bands of Purkinje cells in the cerebellar cortex. The frequency tuning also supports the hypothesis that the climbing fiber system is involved with timing. Activation of this afferent system may require stimuli with appropriate frequency content and stimuli synchronized to the rhythmicity of the inferior olive.

Action Potentials↗
PubMed1998

Sensitive periods for visual calibration of the auditory space map in the barn owl optic tectum.

Previous studies have identified sensitive periods for the developing barn owl during which visual experience has a powerful influence on the calibration of sound localization behavior. Here we investigated neural correlates of these sensitive periods by assessing developmental changes in the capacity of visual experience to alter the map of auditory space in the optic tectum of the barn owl. We used two manipulations. (1) We equipped owls with prismatic spectacles that optically displaced the visual field by 23 degrees to the left or right, and (2) we restored normal vision to prism-reared owls that had been raised wearing prisms. In agreement with previous behavioral experiments, we found that the capacity of abnormal visual experience to shift the tectal auditory space map was restricted to an early sensitive period. However, this period extended until later in life (approximately 200 d) than described previously in behavioral studies (approximately 70 d). Furthermore, unlike the previous behavioral studies that found that the capacity to recover normal sound localization after restoration of normal vision was lost at approximately 200 d of age, we found that the capacity to recover a normal auditory space map was never lost. Finally, we were able to reconcile the behaviorally and neurophysiologically defined sensitive periods by taking into account differences in the richness of the environment in the two sets of experiments. We repeated the behavioral experiments and found that when owls were housed in a rich environment, the capacity to adjust sound localization away from normal extended to later in life, whereas the capacity to recover to normal was never lost. Conversely, when owls were housed in an impoverished environment, the capacity to recover a normal auditory space map was restricted to a period ending at approximately 200 d of age. The results demonstrate that the timing and even the existence of sensitive periods for plasticity of a neural circuit and associated behavior can depend on multiple factors, including (1) the nature of the adjustment demanded of the system and (2) the richness of the sensory and social environment in which the plasticity is studied.

Aging↗
PubMed2025

Prevalence of intronic repeat expansions in the RFC1 gene in Polish patients with cerebellar syndrome.

Cerebellar ataxia with neuropathy and vestibular areflexia syndrome (CANVAS) is a recessively inherited neurodegenerative ataxic disorder, which has been associated with intronic biallelic repeat expansions in the RFC1 gene. Our objective was to assess retrospectively the prevalence of CANVAS in Polish population. We screened 2523 Polish patients in whom other repeat expansions were excluded. To determine the repeat expansions in the RFC1 gene in patients, we performed RFC1-flanking PCR and repeat primed PCR (RP-PCR) and to measure the size of the expansion we used Southern blotting and optical genome mapping to compare the results. We have observed the biallelic pathogenic motif/unit AAGGG expansions in 4.6% and expansions of non-pathogenic motifs AAAAG, AAAGG in 25% patients of our studied population. This is the first large-scale cohort study that confirms the relatively frequent occurrence of the CANVAS in Polish population. To increase the current diagnostics of late-onset ataxias within an unexplained molecular background, we suggest involving the RFC1 repeat expansions analysis to the routine diagnostic workflow.

Humans↗
PubMed2026

Acute Myeloid Leukemia With KMT2A Amplification: A TP53-Alteration-Enriched Subgroup Associated With Chromoanagenesis and Poor Prognosis.

KMT2A amplification (KMT2A-amp) is a rare but aggressive genomic abnormality in acute myeloid leukemia (AML), with limited characterization in prior studies. We retrospectively analyzed 96 patients with AML harboring KMT2A-amp, including 56 newly diagnosed (ND) and 40 relapsed/refractory (RR) cases, with a median age of 68 years. Approximately half of the cases had therapy-related or secondary AML. All cases demonstrated highly complex karyotypes, with frequent -5/del(5q), -7/del(7q), and -17/del(17p). TP53 alteration was present in 93% of patients, whereas other recurrent AML-associated mutations were uncommon, and no AML-defining gene fusions or mutations were identified. In cases evaluated by optical genome mapping, all showed chromoanagenesis involving chromosome 11q23 region. Clinical outcomes were poor, with a median overall survival of 5.5 months in ND and 2.3 months in RR patients. Intensive chemotherapy did not improve survival compared with lower-intensity therapy, whereas venetoclax-based regimens were associated with improved overall survival (7.1 vs 4.6 months; p = 0.04) and event-free survival (6.7 vs 0.17 months; p < 0.01). We conclude that KMT2A-amp AML represents an extremely high-risk subgroup occurring in the context of TP53-associated genomic instability and chromoanagenesis. Its refractoriness to conventional chemotherapy highlights the urgent need for more effective, targeted therapeutic strategies.

KMT2A amplification↗
PubMed1987

The locus of optic nerve head representation in the chick retinotectal map lacks a retinal projection.

Retinotopic representation of the optic nerve head of the contralateral eye lies at the rostrodorsal face of the avian tectum. Since the homologous mammalian retino-collicular map shows an optic disc gap, the present anterograde HRP transport experiments were designed to detect an equivalent gap in the avian tectal retinorecipient strata. Sections tangential to the tectum at the locus of pecten representation displayed a thin, elongated, projection-less strip, crossing radially all retinorecipient laminae. Histochemical demonstration of NADH-diaphorase on similar sections showed low activity of this enzyme along an equivalent, elongated strip.

Animals↗
PubMed2000

Enhanced dispersion of repolarization and refractoriness in transgenic mouse hearts promotes reentrant ventricular tachycardia.

The heterogeneous distribution of ion channels in ventricular muscle gives rise to spatial variations in action potential (AP) duration (APD) and contributes to the repolarization sequence in healthy hearts. It has been proposed that enhanced dispersion of repolarization may underlie arrhythmias in diseases with markedly different causes. We engineered dominant negative transgenic mice that have prolonged QT intervals and arrhythmias due to the loss of a slowly inactivating K(+) current. Optical techniques are now applied to map APs and investigate the mechanisms underlying these arrhythmias. Hearts from transgenic and control mice were isolated, perfused, stained with di-4-ANEPPS, and paced at multiple sites to optically map APs, activation, and repolarization sequences at baseline and during arrhythmias. Transgenic hearts exhibited a 2-fold prolongation of APD, less shortening (8% versus 40%) of APDs with decreasing cycle length, altered restitution kinetics, and greater gradients of refractoriness from apex to base compared with control hearts. A premature impulse applied at the apex of transgenic hearts produced sustained reentrant ventricular tachycardia (n=14 of 15 hearts) that did not occur with stimulation at the base (n=8) or at any location in control hearts (n=12). In transgenic hearts, premature impulses initiated reentry by encountering functional lines of conduction block caused by enhanced dispersion of refractoriness. Reentrant VT had stable (>30 minutes) alternating long/short APDs associated with long/short cycle lengths and T wave alternans. Thus, optical mapping of genetically engineered mice may help elucidate some electrophysiological mechanisms that underlie arrhythmias and sudden death in human cardiac disorders.

Action Potentials↗
PubMed2004

[The practicality of wavefront correction in ophthalmology].

BACKGROUND: "Wavefront correction" has become an often used concept in refractive surgery, even though it is not always uniquely defined. Clinical results, however, are lagging behind the original expectations. METHOD: The physical items wavefront error, light ray, ray tracing and refraction error first have to be well defined, including demonstration of the applicability of the underlying model assumptions. In our simulations optical errors of the eye are expressed in three different ways: two-dimensional refraction error maps, error maps of optical path lengths, and blurred images on the retina. RESULTS: Optical errors are completely correctable only at the locations where they originally occur, i. e., corneal errors at the cornea, lens errors in the lens. Correction at another localization always introduces new errors. Other than in astronomical telescopes, the correction of optical path length errors in the human eye is already limited by short time-scale fluctuations of the relevant parameters which are two orders of magnitude beyond the tolerable error limits. Approximation of the optical path length error by a series expansion (e. g., Zernike polynomials) can induce additional errors. CONCLUSION: The worse the optical properties of an eye are, the less is the wavefront approach applicable for correction.

Computer Simulation↗
PubMed2026

Optics-free spatial genomics for mapping mammalian brain aging by IRISeq.

Spatial transcriptomics has emerged as a transformative approach for in situ mapping of cellular heterogeneity and interactions, yet existing methods often compromise throughput, cost and tissue coverage. Here we introduce Imaging Reconstruction using Indexed Sequencing (IRISeq): an optics-free, cost-effective platform that leverages spatial interaction mapping by indexed sequencing to profile tissues at adjustable sizes and resolutions (5-50&#x2009;&#xb5;m). We applied IRISeq to map gene expression across more than 70 coronal sections from both adult and aged mouse brains, including wild-type and two lymphocyte-deficient models (Rag1 and Prkdc mutants) and generated more than 460,000 spatial transcriptome profiles. Our integrated analysis with 783,264 single-cell transcriptomes revealed region-specific aging signatures that are lymphocyte dependent, notably a downregulation of interferon signaling and inflammation in ventricular regions upon lymphocyte depletion, alongside mutant-specific upregulation of senescence pathways. Furthermore, lymphocyte deficiency was linked to preserved abundance of ependymal cells that line the brain's ventricles and to distinct microglial state dynamics, highlighting a key role for lymphocytes in driving inflammatory processes during brain aging. Overall, IRISeq provides a high-throughput and cost-effective solution for spatially resolved transcriptomic profiling, opening new avenues for elucidating region-specific cellular mechanisms underlying aging and identifying potential therapeutic targets to preserve brain homeostasis.

Animals↗
PubMed1990

Fibre organization of the monkey's optic tract: II. Noncongruent representation of the two half-retinae.

The representations of the two half-retinae were examined in the monkey's optic tract. Intravitreal injections of tritiated amino acids were made to reveal the distributions of the crossed and uncrossed populations of optic axons, while localized implants of horseradish peroxidase (HRP) were made into different regions of the optic tract in order to examine the distributions and morphological types of retrogradely labelled cells at corresponding loci in the two half-retinae. Crossed and uncrossed optic axons are intermingled throughout most of the optic tract, but uncrossed axons are very sparse or absent along both the deep and superficial extremes of the tract. Implants of HRP into the deeper regions of the tract demonstrate that the crossed and uncrossed optic axons of the P beta retinal ganglion cells are slightly out of binocular registration, with the uncrossed map being shifted to a slightly superficial location relative to the crossed map. The optic axons for the remaining cell classes, revealed by implants of HRP into the superficial portion of the tract, are much more conspicuously out of binocular registration (in particular, the P alpha optic axons); but in their cases, the uncrossed optic axons are shifted to deeper locations relative to the crossed optic axons. Further evidence that these optic axon classes are markedly out of binocular registration comes from the two optic tracts of a bilaterally destriated monkey, in which most of the P beta optic axons have undergone a transneuronal retrograde degeneration. Following a uni-ocular injection of tritiated amino acids, the distributions of the remaining crossed and uncrossed axonal labelling occupied different positions within the tract rather than being intermingled, with the uncrossed optic axons situated deep to the majority of crossed optic axons. These results demonstrate that the optic chiasm does not combine binocularly corresponding optic axons of similar type. They also demonstrate that noncongruent field defects should be a common consequence of damage to the optic tract in humans. If the fibre order in the mammalian optic tract arises as a consequence of the sequence of axonal addition during development, then differences in the relative times of genesis for nasal and temporal members of any cell class, and/or differences in the relative pathlengths between the eye and two optic tracts, may produce the fibre ordering described herein.

Animals↗
PubMed2006

Rapid DNA mapping by fluorescent single molecule detection.

DNA mapping is an important analytical tool in genomic sequencing, medical diagnostics and pathogen identification. Here we report an optical DNA mapping strategy based on direct imaging of individual DNA molecules and localization of multiple sequence motifs on the molecules. Individual genomic DNA molecules were labeled with fluorescent dyes at specific sequence motifs by the action of nicking endonuclease followed by the incorporation of dye terminators with DNA polymerase. The labeled DNA molecules were then stretched into linear form on a modified glass surface and imaged using total internal reflection fluorescence (TIRF) microscopy. By determining the positions of the fluorescent labels with respect to the DNA backbone, the distribution of the sequence motif recognized by the nicking endonuclease can be established with good accuracy, in a manner similar to reading a barcode. With this approach, we constructed a specific sequence motif map of lambda-DNA. We further demonstrated the capability of this approach to rapidly type a human adenovirus and several strains of human rhinovirus.

Adenoviruses, Human↗
PubMed1998

Optical responses evoked by cerebellar surface stimulation in vivo using neutral red.

The pH sensitive dye, Neutral Red, was used with optical imaging techniques to map intracellular pH shifts elicited by cortical surface stimulation of the rat cerebellum. In the in vivo rat cerebellar cortex stained with Neutral Red, a brief stimulus train (three stimuli at 33 Hz) evoked a longitudinal beam of increased fluorescence (acidic shift) running parallel to the long axis of the folium within 100 ms of stimulation onset. A 5-10 s stimulus train (5-20 Hz) produced a biphasic optical response consisting of a beam of increased fluorescence (acidic shift) which returned to baseline in approximately 60 s, followed by a beam of decreased fluorescence (alkaline shift) for up to 120 s. A close spatial correspondence was observed between electrophysiological and optical maps of the response to surface stimulation. Application of acetazolamide enhanced the optical signals, acetabenzolamide-phenoxyethene had no effect, and the glutamate antagonist, 6-cyano-7-nitroquinoxaline-2,3-dione, decreased the optical signals. Increased fluorescence was produced by superfusion of the cerebellar cortex with acidic Ringer solutions and a decrease in fluorescence by basic solutions. These fluorescence changes also occurred in the presence of several ion channel/receptor blockers. Increased fluorescence resulted from superfusion with Ringer solution containing sodium propionate and decreased fluorescence with the transition from 5% carbon dioxide to nominally carbon dioxide-free Ringer solution. Recovery from acid loading with ammonium chloride was prevented by amiloride, an inhibitor of the Na+/H+ transporter. Application of Ringer solution with high potassium concentration produced an increase in fluorescence but only a decrease in fluorescence was detected when neuronal blockers were present, an effect consistent with a glial contribution. This decrease in fluorescence was blocked by adding barium. No epifluorescent optical signals were obtained from unstained preparations or preparations stained with cell-permeant fluorescence markers, suggesting little contribution from activity-dependent volume changes and other intrinsic signals. These results demonstrate that the Neutral Red optical signals evoked by cerebellar surface stimulation are primarily pH based and include a significant component related to intracellular pH shifts. The large amplitudes of these optical signals are particularly useful for mapping neuronal activity. Furthermore, this technique provides a novel tool for the study of pH changes in vivo at both high spatial and temporal resolution.

6-Cyano-7-nitroquinoxaline-2,3-dione↗
PubMed1995

Comparison of elevation, curvature, and power descriptors for corneal topographic mapping.

Corneal topography systems sample thousands of surface points and from these data different descriptors are derived to create maps of the cornea. Without visualizing and comparing the maps, it is difficult to appreciate the implications of each descriptor for mapping. We created and compared several maps of an ellipsotoric cornea based on the following surface descriptors: relative elevation, dioptric curvature, and refractive power. Each map presented a different picture of the same cornea. Only elevation maps show true topography but must be calculated relative to an appropriate reference surface to reveal important features. Axial and to a greater degree instantaneous curvature maps bring out optically significant shape asymmetries but misrepresent refractive power away from the apex. Ray tracing maps display optical properties that are not apparent from the elevation or curvature maps, including spherical aberration. Oblique astigmatism can be described using a pair of maps for the sagittal and tangential powers at each surface point. A knowledge of these principles is necessary to interpret color maps of the corneal surface correctly.

Cornea↗
PubMed1998

Optical time-of-flight chemical detection: absorption-modulated fluorescence for spatially resolved analyte mapping in a bidirectional distributed fiber-optic sensor.

A continuous chemically sensitive optical fiber is used with optical time-of-flight chemical detection (OTOF-CD) for spatially resolved analyte mapping. To enhance signal levels and to improve their reproducibility, two novel principles for signal generation and processing are introduced. In the first, the fluorescene of an analyte-insensitive fluorophore is monitored as a function of the evanescent wave absorption of an analyte-sensitive indicator. The resulting signal levels are well above those encountered in optical time domain reflectometry methods that rely upon backscattering for spatially resolved detection. As a result, the method could significantly expand the range of species that can be detected with absorption reagents used in OTOF sensors. The second method raises signal-to-noise ratios by 3-4.5-fold for measurements made at the far ends of the sensing fiber. It functions by sending probe laser pulses into and monitoring their return sequentially from both ends of the sensing fiber. Because the two pulses provide complementary information, only the first half of each of the collected waveforms is used for analyte quantitation. The introduced concepts were experimentally verified with a distributed sensor constructed from a 40-m-long continuous chemically sensitive optical fiber. This sensing element was produced by immobilization of an ammonia-sensitive absorbing reagent (phenol red) and an analyte-insensitive fluorophore (rhodamine 640) into the original silicone cladding of the plastic-clad silica fiber.

Fiber Optic Technology↗