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Platelet-derived growth factor. I. High yield purification and evidence for multiple forms.

Platelet-derived growth factor has been purified from human outdated platelet-rich plasma with a 21% overall yield. This five-step procedure represents a 500,000-fold purification over serum. 6.4 ng/ml (2 X 10(-10) M) of purified platelet-derived growth factor stimulated DNA synthesis in quiescent, density arrested cultures of Swiss 3T3 cells to a level equivalent to that produced by 5% calf serum. The growth-promoting activity and specific binding to 3T3 cells has been shown to be associated with four entities of molecular weights: 31,000, 29,000, 28,500, and 27,000, as determined by sodium dodecyl sulfate-polyacrylamide gel electrophoresis under nonreducing conditions. In the presence of 2-mercaptoethanol, the four molecular species are converted to three inactive chains of lower molecular weights: 17,500, 16,000, and 14,400. Other methods of chemically cleaving the disulfide bonds were investigated: reductive cleavage by S-sulfonation, reductive cleavage with dithiothreitol, and performic acid oxidation. In all cases, mitogenic activity was reduced by 80-100%. Attempts to restore mitogenic activity after reduction were unsuccessful. Two-dimensional 125I-peptide mapping of the nonreduced and reduced multiple forms was also investigated. The four nonreduced moieties gave basically identical maps. The maps of the reduced 17,500- and 16,000-dalton chains were also essentially identical, but the map of the reduced 14,400-dalton chain was significantly different. We propose that platelet-derived growth factor consists of two polypeptide chains: a 14,400-dalton chain and either a 17,500- or a 16,000-dalton chain.

Animals↗

Oligomeric protein structure of beef spleen exonuclease.

A one-step purification of beef spleen exonuclease in the form of a DNA-enzyme complex is described. The purity of the exonuclease was verified by two-dimensional gel electrophoresis. It possesses molecular mass 160 kDa and pI 6.92. The one-dimensional sodium dodecyl sulfate gel after reduction with beta-mercaptoethanol suggests that the 160-kDa exonuclease consists of four polypeptide chains of two different types with molecular masses 55 and 25 kDa. The tetrameric structure of the exonuclease is supported by intermolecular disulfide bonds, and their partial reduction leads to the formation of one stable intermediate with molecular mass 80 kDa formed by binding one 55-kDa with one 25-kDa subunit into a dimer. During two-dimensional gel electrophoresis, the dimer showed pI 6.92 while monomers showed pI 6.78 for the 55-kDa and pI 6.29 for the 25-kDa. Two other intermediate states of two big and one small (135 kDa) and two small and one big subunit (105 kDa) were also visualized. They are unstable and easily dissociated into one 80-kDa dimer and either one 55-kDa or one 25-kDa monomer. The immunoblotting analysis with specific polyclonal antibodies against 160-kDa protein confirmed the subunit structure of the exonuclease. It was found that both monomers are glycosylated.

Animals↗

[Computer-assisted surgical planning. 3-D software for the PC].

A potent software was developed for virtual planning in orthopedic surgery with complex spatial relationships, that runs on a standard PC with Windows 98/NT/2000. This voxel-based 3D-software creates data from tomographic images (CT, MRI, 3D-Sono, PET) in Dicom-III-format, that are visualized in near real-time as 2D-reconstructions or 3D-images. For three-dimensional analysis interactive tools, geometric rulers and an anatomic coordinate-system are available. Multiplanar osteotomies are carried out with a virtual saw. Selected segments are moved freely to mimic fracture reduction and deformity correction. Three-dimensional movement coordination is supported by problem-oriented movement features and a 3D-mouse. User defined objects in CAD-format like implants or anatomical templates can be inserted and moved. Matching of two volume data sets is possible as well as simultaneous processing of different data sets. All 3D-reconstructions can be calculated as virtual radiographs and viewed stereoscopically with LCD-shutter glasses. Export features in various data formats allow further processing of all volume data in CAD applications and rapid prototyping. An intra-operative navigation system can be integrated via an interface. This universally applicable software allows thorough three-dimensional analysis and processing of volume data sets from tomographic images and can be used in various applications through its flexible modular setup.

Diagnostic Imaging↗

Functional divergence of six isoforms of antifungal peptide Drosomycin in Drosophila melanogaster.

Drosomycin (Drs) gene encodes a 44-residue inducible antifungal peptide, Drosomycin, in Drosophila melanogaster. Six genes, Drs-lC, Drs-lD, Drs-lE, Drs-lF, Drs-lG and Drs-lI, show homology to the Drs form in a multigene family on the 3rd chromosome of D. melanogaster. It is the first experimental demonstration that the six members in the Drs family act as functional genes. To further delineate the functional divergence of these six members, their cDNA sequences were cloned respectively into the pET-3C vector and expressed in the E. coli. The antifungal activity of the expression products was assayed using the Cerletti's method. The results showed a difference among the six isoforms in antifungal activity against the tested fungal strains: in which Drs was most effective and showed antifungal activity to all seven fungal strains, whereas isoform Drs-lC was effective to six strains, Drs-lD was effective to five strains, Drs-lG was effective to four strains, and Drs-lE and Drs-lF were effective to only three strains. Drs-lI had no activity against any tested fungal strains. By comparing the variable residue sites of these six isoforms to that of Drosomycin in the three-dimensional structure, we suggested that the reduction in the antifungal activity was due to the variable residues that were not in the alpha-helix. In addition, two inserted residues (RV) in Drs-lI may affect the dimensional structure and resulted in a functional change. These results may explain the evolution of the Drosomycin multigene family and its functional divergence.

Amino Acid Sequence↗

Three-dimensional structure of a mammalian thioredoxin reductase: implications for mechanism and evolution of a selenocysteine-dependent enzyme.

Thioredoxin reductases (TrxRs) from mammalian cells contain an essential selenocysteine residue in the conserved C-terminal sequence Gly-Cys-SeCys-Gly forming a selenenylsulfide in the oxidized enzyme. Reduction by NADPH generates a selenolthiol, which is the active site in reduction of Trx. The three-dimensional structure of the SeCys498Cys mutant of rat TrxR in complex with NADP(+) has been determined to 3.0-A resolution by x-ray crystallography. The overall structure is similar to that of glutathione reductase (GR), including conserved amino acid residues binding the cofactors FAD and NADPH. Surprisingly, all residues directly interacting with the substrate glutathione disulfide in GR are conserved despite the failure of glutathione disulfide to act as a substrate for TrxR. The 16-residue C-terminal tail, which is unique to mammalian TrxR, folds in such a way that it can approach the active site disulfide of the other subunit in the dimer. A model of the complex of TrxR with Trx suggests that electron transfer from NADPH to the disulfide of the substrate is possible without large conformational changes. The C-terminal extension typical of mammalian TrxRs has two functions: (i) it extends the electron transport chain from the catalytic disulfide to the enzyme surface, where it can react with Trx, and (ii) it prevents the enzyme from acting as a GR by blocking the redox-active disulfide. Our results suggest that mammalian TrxR evolved from the GR scaffold rather than from its prokaryotic counterpart. This evolutionary switch renders cell growth dependent on selenium.

Amino Acid Sequence↗

Extent of mitral calcific deposits determined by cineangiography in mitral stenosis and their effect on valve motion, hemodynamics and clinical signs.

The relation between the degree of leaflet calcium in a stenotic mitral valve and several parameters of valve mobility, hemodynamics and clinical signs was determined in 105 patients with relatively pure mitral stenosis (MS). The amount of mitral valve calcific deposits was determined by grading cineangiograms. Compared to 71 patients with no or minimal valvular calcium, the 23 patients with heavy valve leaflet calcium were significantly older, more likely to be men and more likely to be in atrial fibrillation. These patients also had a significant reduction of valve mobility in that their M-mode measurements of valve excursion and rate of valve opening were significantly reduced compared to those of patients without heavy valvular calcium. Two-dimensional echocardiograms also documented a significant reduction in valve mobility and progressive restriction in doming of the anterior mitral leaflet as the level of calcium increased. The prevalence of an opening snap was significantly decreased in patients with heavy vs no or light valvular calcium, and patients without an opening snap had reduced valve mobility. However, a considerable number of patients with moderate to heavy valve calcium retained an opening snap.

Adult↗

Long-term nifedipine unloading therapy in asymptomatic patients with chronic severe aortic regurgitation.

Vasodilating agents acutely reduce regurgitant volume and improve left ventricular performance in aortic regurgitation, but more information is necessary about their long-term efficacy. To evaluate the effects of 12 months of therapy with nifedipine, a randomized, double-blind, placebo-controlled trial was performed in 72 asymptomatic patients with severe aortic regurgitation. At 12 months, patients receiving nifedipine had a significant reduction in left ventricular end-diastolic volume index (110 +/- 19 versus 136 +/- 22 ml/m2, p less than 0.01) and mass (115 +/- 19 versus 142 +/- 16 g/m2, p less than 0.01) measured by two-dimensional echocardiography. They also had a reduction in left ventricular mean wall stress (360 +/- 27 versus 479 +/- 36 kdyne/cm2, p less than 0.001) and an increase in ejection fraction (72 +/- 8% versus 60 +/- 6%, p less than 0.05). These data show that the long-term unloading action of nifedipine is able to reverse left ventricular dilation and hypertrophy and suggest that such therapy has the potential to delay the need for valve replacement in asymptomatic patients.

Adult↗

Determination of left ventricular ejection fraction by visual estimation during real-time two-dimensional echocardiography.

It has been shown that the measured reduction in the cross-sectional area of the left ventricle (LV), as viewed in the short axis, closely approximates its ejection fraction (EF). We assessed the reliability of using two-dimensional echocardiography (2DE) to visually estimate the EF during real-time viewing, without the need of digitizers, planimetry, or calculations. Twenty-five adult hospitalized patients with either suspected or known cardiac disease were evaluated prospectively. Each patient also had gated nuclear angiography during the same admission, and 14 had cardiac catheterization with left ventriculography. The EF was determined by 2DE using a visual estimate of the percent area reduction of the LV cavity in the short-axis view at the level of the papillary muscles. All 2 DE studies were read by two or more blinded reviewers, with a value for the EF to the nearest 2.5% determined by consensus. These values correlated closely to the values determined in all 25 patients with gated nuclear angiography (r = 0.927) and the 14 patients who had left ventriculography (r = 0.935). We believe that this method of visually estimating the LVEF will enable echocardiographers to easily use 2 DE for a reliable and instantaneous assessment of ventricular function, without the need of sophisticated analytical equipment.

Adult↗

Influence of vascular risk factors for atherosclerotic carotid artery plaque progression.

BACKGROUND AND PURPOSE: Investigations regarding arteriosclerosis of carotid arteries showed an association between increased intima-media thickness and vascular risk factors. A newly developed three-dimensional ultrasound method increases the reproducibility of plaque volume measurements because more exact volume measurements can be performed with a reduction of the disadvantages of two-dimensional measurements. In a pilot study the influence of vascular risk factors on carotid artery plaque progression was examined. METHODS: Volumes of atherosclerotic plaques in carotid arteries in 54 patients were measured with a three-dimensional ultrasound system during a 12-month period to determine the relationship between progression or regression of plaque volume, vascular risk factors, dose of aspirin, and flow turbulence in the plaque region. RESULTS: A progression of plaque volume occurred in 67% (36/54) of all plaques. In no plaque was a regression of plaque volume seen. The optimal adjustment of all risk factors showed a significant influence on plaque progression (r = .31). Diastolic blood pressure was the strongest predictor of plaque progression (P < .01), followed by diabetes (P < .03). Turbulence in the plaque region was found in 78% of the patients in the progression group (n = 36) versus 61% in the nonprogression group (n = 18) but was not significant. Dose of aspirin (100 mg versus 250/300 mg) had no influence on plaque volume after 1 year. CONCLUSIONS: Treatment of vascular risk factors reduces the progression of carotid artery plaque volume in three-dimensional ultrasound. The most important factor for plaque progression is a high diastolic blood pressure. Turbulence in the flow pattern and the examined doses of aspirin showed no significant influence.

Aged↗

Solution of functional equations and reduction of dimension in the local energy transfer theory of incompressible, three-dimensional turbulence.

It is shown that the set of integrodifferential and algebraic functional equations of the local energy transfer theory may be considerably reduced in dimension for the case of isotropic turbulence. This is achieved without restricting the solution space. The basis for this is a complete analytical solution to the functional equations Q(k;t,t('))=H(k;t,t('))Q(k;t('),t(')) and H(k;t,s)H(k;s,t('))=H(k;t,t(')). The solution is proved to depend only on a single function straight phi(k;t) solely determining Q and H. Hence the dimension of both the dependent and the independent variables is reduced by one. From the latter, the corresponding two integrodifferential equations are lowered to a single integrodifferential equation for straight phi(k;t), extended by an integral side condition on the k dependence of straight phi(k;t). In the limit nu-->0, a partial solution to the reduced set of equations is presented in the Appendix.

Journal Article↗

Identification of novel mammalian squalene synthase inhibitors using a three-dimensional pharmacophore.

Squalene synthase (E.C. 2.5.1.21) catalyses the reductive dimerisation of farnesyl diphosphate in a [1-4] head to head fashion to form squalene, and is the first committed step in cholesterol biosynthesis. Specific inhibitors of squalene synthase would inhibit cholesterol formation and allow production of other important compounds derived from the cholesterol biosynthetic pathway, namely the ubiquinones (co-enzyme Q(10)), dolichol, and would also allow the isoprenylation process of ras by farnesyl-protein transferase. The construction of a hypothetical squalene synthase three-dimensional pharmacophore is presented. It serves as a template for the identification of several new potential classes of inhibitors. The synthesis, anti-microbial and mammalian pig liver squalene synthase activities of analogues based on the bicyclo[3.2.0]heptane and bicyclo[3.3.0]octane ring systems are reported. Analogues of the latter system are pro-drug type inhibitors and exhibit promising biological activity.

Animals↗

Evaluation of renal artery stenosis by magnetic resonance angiography.

BACKGROUND: Accurate identification of patients with surgically correctable renovascular hypertension has been difficult by noninvasive means. Advances in the technique of magnetic resonance angiography (MRA) have begun to provide detailed, accurate imaging of the vascular system. This study reports our recent experience in the evaluation of the renal arteries by this technique. METHODS: MRA and contrast arteriography were performed in 32 arteries (16 adult patients) for evaluation of hypertension, abdominal aortic aneurysm, mesenteric vascular disease, and aorto-iliac occlusive disease. Luminal diameter reduction (%) was determined from two-dimensional time-of-flight (TOF) axial images. Contrast arteriography served as the gold standard for comparison. RESULTS: Contrast arteriography revealed a 50% or greater stenosis in 11 of 32 vessels studied (34%). As a screening test for detection of greater than 50% diameter reduction, MRA had a sensitivity of 91%, a negative predictive value of 94%, and an overall accuracy of 81%. Linear regression analysis demonstrated significant correlation between MRA and arteriographic measurements (r = 0.8; P < 0.001). CONCLUSIONS: This study demonstrates the ability of MRA to accurately assess the main renal arteries for the presence of critical stenosis. This noninvasive evaluation compares well with conventional angiography and may have increasing application in the screening of patients with suspected renovascular disease.

Adult↗

Proteomic analysis on insulin signaling in human hematopoietic cells: identification of CLIC1 and SRp20 as novel downstream effectors of insulin.

Insulin/IGF-I-dependent signals play important roles for the regulation of proliferation, differentiation, metabolism, and autophagy in various cells, including hematopoietic cells. Although the early protein kinase activation cascade has been intensively studied, the whole picture of intracellular signaling events has not yet been clarified. To identify novel downstream effectors of insulin-dependent signals in relatively early phases, we performed high-resolution two-dimensional electrophoresis (2-DE)-based proteomic analysis using human hematopoietic cells 1 h after insulin stimulation. We identified SRp20, a splicing factor, and CLIC1, an intracellular chloride ion channel, as novel downstream effectors besides previously reported effectors of Rho-guanine nucleotide dissociation inhibitor 2 and glutathione S-transferase-pi. Reduction in SRp20 was confirmed by one-dimensional Western blotting. Moreover, MG-132, a proteasome inhibitor, prevented this reduction. By contrast, upregulation of CLIC1 was not observed in one-dimensional Western blotting, unlike the 2-DE results. As hydrophilic proteins were predominantly recovered in 2-DE, the discrepancy between the 1-DE and 2-DE results may indicate a certain qualitative change of the protein. Indeed, the nuclear localization pattern of CLIC1 was remarkably changed by insulin stimulation. Thus insulin induces the proteasome-dependent degradation of SRp20 as well as the subnuclear relocalization of CLIC1.

Amino Acid Sequence↗

Enhancing text categorization with semantic-enriched representation and training data augmentation.

OBJECTIVE: Acquiring and representing biomedical knowledge is an increasingly important component of contemporary bioinformatics. A critical step of the process is to identify and retrieve relevant documents among the vast volume of modern biomedical literature efficiently. In the real world, many information retrieval tasks are difficult because of high data dimensionality and the lack of annotated examples to train a retrieval algorithm. Under such a scenario, the performance of information retrieval algorithms is often unsatisfactory, therefore improvements are needed. DESIGN: We studied two approaches that enhance the text categorization performance on sparse and high data dimensionality: (1) semantic-preserving dimension reduction by representing text with semantic-enriched features; and (2) augmenting training data with semi-supervised learning. A probabilistic topic model was applied to extract major semantic topics from a corpus of text of interest. The representation of documents was projected from the high-dimensional vocabulary space onto a semantic topic space with reduced dimensionality. A semi-supervised learning algorithm based on graph theory was applied to identify potential positive training cases, which were further used to augment training data. The effects of data transformation and augmentation on text categorization by support vector machine (SVM) were evaluated. RESULTS AND CONCLUSION: Semantic-enriched data transformation and the pseudo-positive-cases augmented training data enhance the efficiency and performance of text categorization by SVM.

Algorithms↗

[Planned 3-dimensional low-volume conformal irradiation of a local prostatic carcinoma].

AIM: Recent data have shown a significant reduction of acute side effects by means of a three-dimensional planned conformal radiotherapy of carcinoma of the prostate compared to treatment techniques used before. Theoretically, an optimized field coverage of the planning target volume should result in a reduction of treated bladder and rectum volumes. We studied the effects of individualized blocks on treatment volumes, planning target volumes, irradiated bladder and rectum volumes on basis of three-dimensional treatment planning by means of beam's-eye-view technique. PATIENTS AND METHOD: We compared dose-volume-histograms of 2 different planning models, a (fictitious) open 4-field-box-technique and a technique with conformal blocked fields designed from the beam's-eye-view display (prescribed dose 66 Gy, daily single fraction 2 Gy). Plans of 115 patients with localized prostate cancer treated from January 1994 to February 1996 were analyzed. RESULTS: Using individualized fields treatment volume (covered by the 90%-isodose) was reduced by 23% on the average in comparison to the planning model without blocks. The averaged difference of treated volume and planning target volume, as a grade of efficiency of conformation, was reduced by 38% (496 cm3 303 cm3) using individualized blocks. 23% of the treated bladder volume and 13% of the treated rectum volume had been saved on the average. Nevertheless, at least 11.5% of the bladder volume and 27.6% of the contoured rectum volume were treated with the prescribed dose (55 Gy = 100%). CONCLUSIONS: The comparison of dose-volume-histogram-data showed that especially high dose volumes of organs at risk had been saved by means of individualized blocks created from the beam's-eye-view. The blocks did not affect the dose distribution of the planning target volume adversely. Consequently the impact of these data on the extent of side effects and local tumor control has to be proven.

Aged↗

Role of entropy barriers for diffusion in the periodic potential.

Diffusion of a particle in the N-dimensional external potential which is periodic in one dimension and unbounded in the other N-1 dimensions is investigated. We find an analytical expression for the overdamped diffusion and study numerically the cases of moderate and low damping. We show that in the underdamped limit, the multidimensional effects lead to a reduction (compared to the one-dimensional motion) in the jump lengths between subsequent trappings of the atom at the minima of the external periodic potential. As an application, we consider the diffusion of a dimer adsorbed on the crystal surface.

Journal Article↗

[3-Dimensional irradiation planning in brain tumors. The advantages of the method and the clinical results].

PURPOSE: Radiotherapy became an important component in the treatment of brain gliomas. The aim of this study is to analyse several advantages of the three-dimensional conformal radiation therapy in comparison with a two-dimensional conventional technique and to present the clinical results of 43 patients with brain gliomas treated according to a three-dimensional planning. PATIENTS AND METHOD: Between January 1994 and December 1995, 43 patients with malignant brain gliomas (WHO III and IV) were treated in our department according to a three-dimensional treatment planning. The patients received a total irradiation dose of 60 Gy, 2 Gy/day, 5 days/week. The rate of survival was analysed in relation with the known prognostical factors: histology, Karnofsky index, age, resection status. In 10 patients a three-dimensional treatment planning was compared with a conventional two-dimensional planning: the volume of the normal brain tissue irradiated to high dose levels (95% isodose) and the normal tissue complication probability (NTCP) for the brain by Kutcher and Lyman were comparatively analysed. RESULTS: The survival rate for the whole group was 14 months. The histology of the tumor, age, Karnofsky index and resection status were important prognostical factors. The three-dimensional planning allows a 15 to 20% reduction in the volume of normal brain tissue irradiated to high dose levels (95% isodose). The NTCP is significantly lower using the three-dimensional technique (range 0.03% to 13%), in comparison with the two-dimensional conventional technique (range 0.1% to 26%). The value of NTCP increases with tumor volume. CONCLUSIONS: Concerning the tumor control and survival rate, the three-dimensional treatment planning shows no advantages compared to the standard conventional methods. The main advantage of the three-dimensional treatment planning is the possibility to spare normal brain tissue. The possibility to integrate mathematical models in the evaluation of the therapy could give this technique new dimensions.

Adolescent↗

Postpubertal sex differentiation of forebrain structures and functions depend on transforming growth factor-alpha.

Sex- and age-associated deficits in brain structure and behavior are reported in a number of neuropsychiatric disorders. Although genetic and environmental factors are thought to contribute to the pathogenesis, there are only few examples in clinical or experimental systems that have identified specific causes. Here, we report that transforming growth factor-alpha (TGFalpha) may regulate sex- and age-dependent development of forebrain structures and associated neural functions after puberty. Waved-1 (Wa-1) mice inherit an autosomal recessive, spontaneous mutation that results in a postnatal reduction in TGFalpha gene expression. The assessment of forebrain structures using a three-dimensional magnetic resonance microscopy indicated ventricular enlargement and striatal reduction in both male and female Wa-1 adult mice, with Wa-1 males exhibiting a more severe phenotype. In contrast, the hippocampal volume was reduced only in adult Wa-1 males. Similarly, behavioral analyses showed impaired auditory and contextual fear learning in adult Wa-1 males only, whereas abnormal stress response was expressed by both male and female adult Wa-1 mice. Interestingly, all behavioral deficits were absent before full sexual maturation, despite some slight forebrain structural abnormalities. These results suggest that TGFalpha may regulate postpubertal, sex differentiation in ventricular and periventricular anatomy and associated behavior, affecting predominantly males. In particular, the adult male-specific reduction in hippocampal volume may reflect an age- and sex-specific regulation of stress homeostasis and fear learning. Furthermore, a lack of a behavioral phenotype, despite anatomical alterations in peripubertal Wa-1 mice, suggests that analysis of certain neuroanatomical features at puberty may predict neurobehavioral deficits in adulthood.

Acoustic Stimulation↗