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PubMed1992

Structure and DNA binding activity of analogues of 1,5-bis(4-amidinophenoxy)pentane (pentamidine)

The DNA binding properties of a series of 39 bisbenzamidines related to the clinically used antipneumocystis drug pentamidine (1) were studied. Changes in the thermal denaturation temperature of calf thymus DNA (delta Tm) showed that all the compounds have significant affinity for DNA. A comparison of delta Tms for the series with delta Tms of base-pair-specific DNA-binding compounds, using homopolymers poly(dA).poly(dT) and poly(dG-dC).poly(dG-dC), indicated that the compounds show moderate specificity for AT base pairs. Lack of DNA helix extension, measured by viscometric titration with sonicated calf thymus DNA, indicated that the compounds do not bind to DNA by intercalation. Analogues of 1 with an odd number of methylenes connecting the benzamidine rings had a higher affinity for DNA and homopolymers than analogues with an even number of methylenes. All of the compounds containing an amidino group meta to the linking chain showed lower polynucleotide affinity. These results suggest that the shape of the molecules was important for DNA binding. Molecular modeling studies showed a correlation between the DNA binding and the radius of curvature of molecular mechanics models of the molecules. Monosubstitution on the benzamidine rings or replacement of the amidino group with the cyclic imidazolino group had no influence on the DNA-binding affinity of the compounds. Substitution of NH for the ether oxygen connecting group of 1 had no effect on the DNA binding or base-pair specificity. Methylation of either of the nitrogen atoms of the imidazolino group to provide an analogue of 1 with N-methylimidazolino groups decreased DNA affinity considerably. GC vs AT base-pair specificity as measured by delta Tm does not correlate with the radius of curvature. The experimental and modeling results are consistent with DNA minor-groove binding.

DNA↗

PubMed2006

Influence of conformational asymmetry on the phase behavior of ternary homopolymer/block copolymer blends around the bicontinuous microemulsion channel.

We have developed a new ternary polymeric system, poly(ethylene-alt-propylene) (PEP)/poly(butylene oxide) (PBO)/PEP-PBO, to study the complex phase behavior near the bicontinuous microemulsion phase channel. The molecular weights of the PEP and PBO homopolymers are 2600 and 3050 g/mol, respectively, and the copolymer is 23.4 kg/mol with volume fraction composition fPBO=0.49. A combination of small-angle neutron scattering, small-angle X-ray scattering, rheology, optical microscopy, and visual oil bath measurements was employed to map out the phase diagrams at five fixed homopolymer PBO/PEP ratios, ranging from 40/60 to 60/40 by volume, with copolymer concentrations ranging from 0 to 100%. It was found that the bicontinuous microemulsion channel is consistently cut off at low temperature by a hexagonal phase. We attribute this phenomenon to the effect of the conformational asymmetry between the PEP and PBO species, whereby the more flexible PBO component induces a spontaneous curvature toward the PBO domains. These findings complement previous descriptions of the isopleth phase diagrams for A/B/A-B systems and identify a new design variable for preparing bicontinuous phases.

Journal Article↗

PubMed2004

Complex coacervation core micelles. Colloidal stability and aggregation mechanism.

Complex coacervation core micelles were prepared with various polyelectrolytes and oppositely charged diblock copolymers. The diblock copolymers consist of a charged block and a water-soluble neutral block. Our experimental technique was dynamic light scattering in combination with titrations. At mixing ratios where the excess charge of the polyelectrolyte mixture is approximately zero, micelles may be formed. The colloidal stability of these micelles depends on the block lengths of the diblock copolymers and the molecular weight of the homopolymers. In addition, the chemical nature of the corona blocks and nature of the ionic groups of the polyelectrolytes also influence the stability and aggregation mechanism. A corona block that is three times longer than the core block is a prerequisite for stable micelles. If this ratio is further increased, the molecular weight of the homopolymers as well as the type of the ionic groups starts to play a major role. With very asymmetric block length ratios, no micelles are formed. In addition, if the neutral block is too short, the polymeric mixture forms a macroscopic precipitate. With a constant core block, the aggregation number decreases with increasing corona block length, as is predicted by scaling models for polymeric micelles with a neutral corona.

Journal Article↗

PubMed2004

PNIPAM-co-polystyrene core-shell microgels: structure, swelling behavior, and crystallization.

The present contribution presents the single-step preparation and characterization of poly(N-isopropyl acrylamide)-co-polystyrene core-shell microgels with varying polystyrene content. The swelling behavior of the particles is investigated using dynamic light scattering and differs significantly from the swelling behavior of poly(N-isopropyl acrylamide) homopolymer particles. The lower critical solution temperature is found to be shifted to lower temperatures upon increasing the polystyrene content of the particles. The core-shell structure of the particles is revealed by means of small angle neutron scattering (SANS) using the method of contrast variation. Additionally, the formation of mesoscopic crystals of these particles is investigated by means of scanning electron microscopy and also by SANS. The particles seem to have preferable properties with respect to crystallization compared to homopolymer microgels.

Journal Article↗

PubMed2004

Breath figure patterns prepared by spin coating in a dry environment.

We introduce a novel method for fabricating breath figure patterns on a homopolymer film by spin coating of polymer solutions with various solvents. The homopolymers employed in this study were cellulose acetate butyrate, monocarboxylated end-functional polystyrene, and poly(methyl methacrylate). Breath figure patterns were generated even when a water-miscible solvent such as tetrahydrofuran (THF) was used as a solvent. We even succeeded in generating breath figure patterns by spin coating even under a dry environment (relative humidity less than 30%), when water was directly added into THF solution. With the combination of the spin coating method, pores with a few hundred nanometers to several micrometers have been generated. We found that the pore size becomes larger with increasing water content in THF solution and decreasing rotating speed. This is equivalent to increasing humidity and decreasing evaporation speed, respectively, in the conventional method, which is direct solvent evaporation under a humid environment. Thus, compared with the conventional method for making breath figure patterns, this method would be very convenient for fabricating large-scale films with various pore sizes.

Journal Article↗

PubMed2005

Influence of the chain composition on the thermodynamic properties of binary and ternary polymer solutions.

Thermodynamic properties of binary and ternary polymer solutions (one or two uncharged polymers in one solvent) were studied. Poly(vinyl pyrrolidone) (PVP), fully hydrolyzed poly(vinyl alcohol) (PVA) homopolymers, and water-soluble poly(vinyl alcohol-co-vinyl acetal, -vinyl propional, and -vinyl butiral) copolymers with various acetal content and chain structure, respectively, were used in the experiments. The hydrophilic/hydrophobic character of the PVA-based macromolecules and their compatibility with the PVP homopolymer were systematically regulated by changing the chemical structure of the copolymers (acetal content and/or length of side chains). The water activities in binary and ternary solutions of the chemically different polymers were determined by a gel-deswelling method developed here for ternary solutions. On the basis of the Flory-Huggins theory, the relevant solvent-segment and segment-segment pair interaction parameters (chi) have been calculated. The chi12 segment-solvent interaction parameters proved to be sensitive indicators for changes in the chemical structure of the copolymers. With increase of either the acetal content or the length of side chains in the copolymer, chi12 approached the value characteristic of a theta condition. No significant differences could be revealed in the segment-segment interaction parameters obtained for the PVP-copolymer mixtures with various acetal derivatives, when the chi12 and chi13 interaction parameters determined in binary solutions were used in the calculations for chi23. Determination of the parameters chi1,23 as suggested by Panayiotou, however, showed that increasing the acetal content or the length of the hydrophobic side chains in the copolymer resulted in a reduction in the interaction between the PVA "acetals" and PVP molecules.

Journal Article↗

PubMed2004

Synthesis and characterization of novel pH-responsive microgels based on tertiary amine methacrylates.

Emulsion polymerization of 2-(diethylamino)ethyl methacrylate (DEA) in the presence of a bifunctional cross-linker at pH 8-9 afforded novel pH-responsive microgels of 250-700 nm diameter. Both batch and semicontinuous syntheses were explored using thermal and redox initiators. Various strategies were evaluated for achieving colloidal stability, including charge stabilization, surfactant stabilization, and steric stabilization. The latter proved to be the most convenient and effective, and three types of well-defined reactive macromonomers were examined, namely, monomethoxy-capped poly(ethylene glycol) methacrylate (PEGMA), styrene-capped poly[2-(dimethylamino)ethyl methacrylate] (PDMA50-St), and partially quaternized styrene-capped poly[2-(dimethylamino)ethyl methacrylate] (10qPDMA50-St). The resulting microgels were pH-responsive, as expected. Dynamic light scattering and 1H NMR studies confirmed that reversible swelling occurred at low pH due to protonation of the tertiary amine groups on the DEA residues. The critical pH for this latex-to-microgel transition was around pH 6.5-7.0, which corresponds approximately to the known pKa of 7.0-7.3 for linear PDEA homopolymer. The microgel particles were further characterized by electron microscopy and aqueous electrophoresis studies. Their swelling and deswelling kinetics were investigated by turbidimetry. The PDEA-based microgels were compared to poly[2-(diisopropylamino)ethyl methacrylate] (PDPA) microgels prepared with identical macromonomer stabilizers. These PDPA-based microgels had a lower critical swelling pH of around pH 5.0-5.5, which correlates with the lower pKa of PDPA homopolymer. In addition, the kinetics of swelling for the PDPA microgels was somewhat slower than that observed for PDEA microgels; presumably this is related to the greater hydrophobic character of the former particles.

Chemical Phenomena↗

PubMed2004

Control of surface properties using fluorinated polymer brushes produced by surface-initiated controlled radical polymerization.

Surface-grafted styrene-based homopolymer and diblock copolymer brushes bearing semifluorinated alkyl side groups were synthesized by nitroxide-mediated controlled radical polymerization on planar silicon oxide surfaces. The polymer brushes were characterized by X-ray photoelectron spectroscopy (XPS), near-edge X-ray absorption fine structure (NEXAFS), and time-dependent water contact angle measurements. Angle-resolved XPS studies and water contact angle measurements showed that, in the case of the diblock copolymer brushes, the second block to be added was always exposed at the polymer-air interface regardless of its surface energy. Values of z*/Rg were estimated based on the radius of gyration, Rg, of the grafted homopolymer or block copolymer chains for the grafted brushes and thickness of the brush, z*. The fact that z*/Rg > 1 suggests that all these brushes are stretched. These results support the idea that after grafting the first block onto the surface the nitroxide-end capped polymer chains were able to polymerize the second block in a "living" fashion and the stretched brush so formed was dense enough that the outermost block in all cases completely covers the surface. NEXAFS analysis showed a relationship between the surface orientation of the fluorinated side chains and brush thickness with thicker brushes having more oriented side chains. Time-dependent water contact angle measurements revealed that the orientation of the side chains of the brush improved the surface stability toward reconstruction upon prolonged exposure to water.

Absorption↗

PubMed2004

Particle morphology as a control of permeation in polymer films obtained from MMA/nBA colloidal dispersions.

The combination of precision-controlled weight loss measurements and spectroscopic surface FT-IR analysis allowed us to identify unique behaviors of poly(methyl methacrylate) (p-MMA). When MMA and n-butyl acrylate (nBA) are polymerized into p-MMA and p-nBA homopolymer blends, MMA/nBA random copolymers, and p-MMA/p-nBA core-shell morphologies, a controlled mobility and stratification of low molecular weight components occurs in films formed from coalesced colloidal dispersions. Due to different affinities toward water, p-MMA and p-nBA are capable of releasing water at different rates, depending upon particle morphological features of initial dispersions. As coalescence progresses, water molecules are released from the high free volume p-nBA particles, whereas p-MMA retains water molecules for the longest time due to its hydrophilic nature. As a result, water losses at extended coalescence times are relatively small for p-MMA. MMA/nBA copolymer and p-MMA/p-nBA blends follow the same trends, although the magnitudes of changes are not as pronounced. The p-MMA/p-nBA core-shell behavior resembles that of p-nBA homopolymer, which is attributed to significantly lower content of the p-MMA component in particles. Annealing of coalesced colloidal films at elevated temperatures causes migration of SDOSS to the F-A interface, but for films containing primarily p-nBA, reverse diffusion back into the bulk is observed. These studies illustrate that the combination of different particle morphologies and temperatures leads to controllable permeation processes through polymeric films.

Journal Article↗

PubMed2005

Harnessing light to create defect-free, hierarchically structured polymeric materials.

Computer simulations reveal how photoinduced chemical reactions in polymeric mixtures can be exploited to create long-range order in materials with features that range from the submicron to the nanoscale. The process is initiated by shining a spatially uniform light on a photosensitive AB binary blend, which thereby undergoes both a reversible chemical reaction and a phase separation. When a well-collimated, higher intensity light is rastered over the sample, the system forms defect-free, spatially periodic structures. If a nonreactive homopolymer C is added to the system, this component localizes in regions that are irradiated with a higher intensity light, and one can effectively "write" a pattern of C onto the AB film. Rastering over the ternary blend with the collimated light now leads to hierarchically ordered patterns of A, B, and C. Because our approach involves homopolymers, it significantly expands the range of materials that can be fashioned into a periodic pattern. The findings point to a facile process for manufacturing high-quality polymeric components in an efficient manner.

Letter↗

PubMed2006

Supramolecular assemblies with tunable morphologies from homopolymeric and small organic molecular building blocks.

This work demonstrates the formation of micrometer-sized supramolecular assemblies with tunable morphologies using a homopolymer, poly(4-vinylpyridine), and a small organic acid, 5,7-dodecadiynedioic acid, as the building molecules. Three different morphologies (hollow spheres, solid spheres, and rods) were obtained, depending on the molar ratio of the building molecules. It is proposed that hydrogen bonding between P4VP and DCDA and the pi-pi stacking of the diacetylenic moieties are responsible for the formation of these assemblies. Interestingly, ordered hexagonal and lamellar mesostructures were also formed within the microstructure during the co-assembly process. As a result, UV irradiation of the supramolecular assemblies polymerized the diacetylenic moieties, resulting in cross-linked and responsive blue polydiacetylenic assemblies that can change color to red upon external stimuli (e.g., thermal stimuli). This work provides a novel concept of the synthesis of responsive supramolecular assemblies from a homopolymer and small organic molecules.

Fatty Acids↗

PubMed2006

Langmuir and Langmuir-Blodgett films of poly(ethylene oxide)-b-poly(epsilon-caprolactone) star-shaped block copolymers.

Self-assembly of poly(ethylene oxide)-block-poly(epsilon-caprolactone) five-arm stars (PEO-b-PCL) was studied at the air/water (A/W) interface. The block copolymers consist of a hydrophilic PEO core with hydrophobic PCL chains at the star periphery. All the polymers have the same number of ethylene oxide repeat units (9 per arm), and the number of epsilon-caprolactone repeat units ranges from 0 to 18 per arm. The Langmuir monolayers were analyzed by surface pressure/mean molecular area isotherms, compression-expansion hysteresis experiments, and isobaric relaxation measurements, and the Langmuir-Blodgett (LB) films' morphologies were investigated by atomic force microscopy (AFM). PCL homopolymers crystallize directly at the A/W interface in a narrow surface pressure range (11-15 mN/m). In the same pressure region, the star-shaped block copolymers undergo a phase transition corresponding to the collapse and the crystallization of the PCL chains as shown by the presence of a pseudoplateau in the isotherms. The LB films were prepared by transferring the Langmuir monolayers onto mica substrates at various surface pressures. AFM imaging confirmed the formation of PCL crystals in the LB monolayers of the PCL homopolymers and of the copolymers, but also showed that the PCL segments can undergo additional crystallization after monolayer transfer during water evaporation. The PCL crystal morphologies were also strongly influenced by the surface pressure and by the PEO segments.

Ethylene Oxide↗

PubMed2007

Design, synthesis, and aqueous aggregation behavior of nonionic single and multiple thermoresponsive polymers.

Nonionic water-soluble poly(acrylamide)s and poly(acrylate)s were synthesized by RAFT and ATRP methods. Similar to the synthesized poly(N-isopropylacrylamide) and poly(N-acryloylpyrrolidine), aqueous solutions of statistical acrylate copolymers bearing two different oligo(ethylene oxide) side chains showed a sharp clouding transition upon heating beyond characteristic temperatures. The temperature of the cloud point can be easily fine tuned by the copolymer composition. As for poly(N-isopropylacrylamide) and poly(N-acryloylpyrrolidine), the cloud-point temperatures of these statistical copolymers are rather insensitive to changes in the molar mass or the NaCl content of the solutions. Also, ternary triblock copolymers containing one permanently hydrophilic block and two different thermoresponsive blocks were synthesized, varying the block sequence systematically. Their aggregation in aqueous solution was followed by turbidimetry and dynamic light scattering. Depending on the heating process and the triblock sequence, micellar aggregates of 40 to 600 nm size were found. The thermally induced aggregation behavior depends sensitively on the block sequence but is also subject to major kinetic effects. For certain block sequences, a thermally induced two-step association is observed when heating beyond the first and second cloud points of the thermoresponsive blocks. However, the thermal-transition temperatures of the block polymers can differ from the thermal-transition temperatures of the individual homopolymers. This may be caused by end-group effects but also by mutual interactions of the different blocks in solution, as physical mixtures of the homopolymers exhibit deviations from a purely additive thermal behavior.

Journal Article↗

PubMed2007

Quantitative electrochemical and electrochromic behavior of terthiophene and carbazole containing conjugated polymer network film precursors: EC-QCM and EC-SPR.

A comparative analysis of the copolymerization behavior between an electro-active terthiophene and a carbazole moiety of a conjugated polymer precursor was investigated using electrochemical and hyphenated electrochemical methods. Five different precursor polymers were first synthesized and characterized using NMR, IR, and GPC. The polymers include homopolymers of individual electro-active groups (P3T, P-CBZ) and different compositions of 25, 50, and 75% (P3TC-25, P3TC50, and P3TC-75) with respect to the two electro-active groups. Since the oxidation potentials of terthiophene and carbazole lie very close to each other, highly cross-linked copolymer films of varying extent were produced depending on the composition. The copolymerization extent was found to be dependent primarily on the amount of the terthiophene, which in this case provided for a more efficient carbazole polymerization and copolymerization than with just carbazole alone (homopolymer). The extent of copolymerization, electrochromic properties, and viscoelastic changes was quantitatively investigated using a number of hyphenated electrochemistry techniques: spectro-electrochemistry, electrochemical quartz crystal microbalance studies (EC-QCM), and electrochemical surface plasmon resonance spectroscopy (EC-SPR). Each technique revealed a unique aspect of the electrocopolymerization behavior that was used to define structure-property relationships and the deposition/copolymerization mechanism.

Journal Article↗

PubMed1999

Production of polyhydroxyalkanoates by Pseudomonas nitroreducens.

A strain coded AS 1.2343 was isolated from oil-contaminated soil in an oil-field in North China Tianjian City and it was identified as Pseudomonas nitroreducens. The strain demonstrated some unusual ability to synthesize polyhydroxybutyrate (PHB) homopolymer from medium-chain-length (mcl) fatty acids including hexanoate and octanoate. While polyhydroxyalkanoates (PHA) consisting of mcl hydroxyalkanoate (HA) monomers such as hydroxyoctanoate (HO) and hydroxydecanoate (HD) were the major compositions when butyrate, decanoate, lauric acid and tetradecanoic acid were used as substrates for the cell growth, respectively. PHA was accumulated up to 77% of the cell dry weight when growth was conducted in lauric acid, it appeared that the HA contents in the PHA would not be much affected by the changing of the lauric acid concentration. Varying the concentration ratio of butyrate to octanoate could change the composition of PHA accumulated by the strain. Yet PHB homopolymer was always the only polyester synthesized by the strain, regardless of the octanoate concentration change. Additionally, the ratio of carbon to nitrogen (C/N) in butyrate media was found to have effects on the PHA monomer content, as C/N increased from 2 to 100, content of HB decreased from 100% to 7%. PHA polyester synthesized by cells of Pseudomonas nitroreducens AS 1.2343 was a blend polymers consisting of acetone-insoluble HB and acetone-soluble mcl HA monomers.

Caprylates↗

PubMed1997

The genomic 5' terminus of Manchester calicivirus.

An enteric calicivirus showing the classic cup-shaped surface morphology was identified in a stool sample obtained from a child with symptoms of acute gastroenteritis (Portishead virus, PHV). Genomic RNA was extracted directly from the PHV stool sample and amplified by RT-PCR using primers based on the Manchester isolate of HuCV. The 3' terminus of the cDNA was defined by homopolymer tailing with dATP and revealed an additional 165 nucleotides suggesting that the previously determined Manchester HuCV (MV) genome sequence was incomplete. Homopolymer tailing of MV cDNA primed using sequence data from the 5' terminus of PHV allowed extension of the MV genome by a further 165 nucleotides thereby increasing the overall genome length to 7431 nucleotides and resulting in an additional 72 amino acids at the N-terminus of the polyprotein. A conserved sequence motif typical of other caliciviruses was also identified at the extreme 5'-terminus of the genome.

Amino Acid Sequence↗

PubMed2000

Hydrolytic degradation of PCL/PEO copolymers in alkaline media.

PCL/PEO copolymers with different compositions were obtained from ring opening polymerization of epsilon-caprolactone in the presence of ethylene oxide and characterized by various analytical techniques. Data collected from DSC and X-ray diffractometry suggested that the copolymer chains possess a blocky structure, leading to both PCL and PEO-type crystalline structures. Hydrolytic degradation of these copolymers was carried out in a pH=10.6 carbonate buffer solution at 37 degrees C. Comparison was made with a PCL homopolymer and a PCL/PEG blend which had the same gross composition as one of the copolymers. The results showed that the presence of PEO sequences considerably enhanced the hydrophilicity of the copolymers as compared with PCL homopolymer. Nevertheless, the degradability of PCL chains was not enhanced due to the phase separation between the two components. These materials should be of great interest for biomedical uses such as matrices for sustained drug delivery because of the presence of both hydrophilic and hydrophobic microdomains.

Journal Article↗

PubMed2002

Characterization of autoantibodies to ferritin in canine serum.

Ferritin-binding proteins circulating in mammalian blood are thought to be involved in the clearance of ferritin. The present study characterizes canine serum autoantibodies (IgM and IgA) that react with ferritin. Canine IgM and IgA bound to bovine spleen ferritin as well as canine liver ferritin. To examine the specificity of canine IgM and IgA to ferritin H and L subunits, we used canine heart ferritin and canine liver ferritin with H/L subunit ratios of 3.69 and 0.43, respectively. Canine IgM and IgA recognized both of the H- and L-subunit-rich isoferritins, showing that their binding activities to ferritin depend on the H-subunit content. Recombinant bovine H-chain ferritin homopolymer expressed in a baculovirus expression system bound more with IgM and IgA than the recombinant L-chain homopolymer expressed under the same conditions. These results suggest that canine IgM and IgA recognize H-subunit-rich isoferritins, and that H-subunit-rich isoferritins are cleared from the circulation more rapidly than L-subunit-rich isoferritins.

Animals↗