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PubMed1982

Electron probe and electron energy loss analysis in biology.

Methods, applications and limitations of quantitative electron probe analysis, X-ray mapping, electron energy loss analysis and energy filtered imaging are described, with emphasis on the analysis of thin (less than 200nm) cryosections. Energy dispersion electron probe analysis can measure reliably 5 to 10mM/Kg of biologically prevalent elements in 50nm diameter areas of 100 to 150 nm thick cryo sections during 100-300 sec counts. The minimal detectable mass (MDM) with a conventional thermionic electron source is approximately 10(-19)g Fe (100 sec count) and can be reduced to 10(-20)g through the use of a field emission gun (FEG). A spatial resolution of 8.7nm is demonstrated in two-dimensional Fourier transforms of Mo X-ray maps of stained catalase crystals. Significant biological results of quantitative electron probe analysis include the measurement of total Ca released from the Mg and K taken up by the sarcoplasmic reticulum during muscle contraction, and the demonstration that mitochondria do not contribute to the physiological regulation of cytoplasmic free Ca levels in cardiac, vascular smooth and striated muscle. Electron energy loss analysis (EELS) promises a significant improvement in sensitivity for the measurement of Ca; based on statistical errors of the measurement, 250 microM/Kg Ca should be measureable with EELS in 250 sec. through the Ca L-edge loss. The use of a doubly corrected magnetic sector spectrometer as a transmission electron microscope imaging filter outside the microscope vacuum is illustrated, and the resolution of the iron core (7.5nm) and surrounding organic shell of single ferritin molecules is demonstrated in, respectively, iron M and carbon K loss images.

Animals↗
PubMed2004

Age hardening by dendrite growth in a low-gold dental casting alloy.

Commercial low-gold dental casting alloy composed of Ag-Pd-In-Au-Zn was studied to clarify the age-hardening mechanism and related microstructural changes. The hardness of solution-treated specimen began to increase and reached the maximum value with ageing time, and then the maximum hardness value decreased by further ageing. The changes of X-ray diffraction (XRD) pattern during isothermal ageing revealed that the age hardening was not caused by phase transformation. By comparing the age-hardening curve with the changes in full-width at half-maximum of the XRD peaks at each ageing time, it was revealed that the coherency strains were formed in the Ag-rich matrix, which contributed to the hardness increase during ageing. From scanning electron microscopic observation and electron probe microanalysis, it was clarified that fine particle-like structures composed of InPd containing small amount of Zn gathered by diffusion in the Ag-rich matrix, and the coherency strains which formed during that time caused the hardness increase in the early stage of age-hardening process. The coherency strains were released by the progress of coarsening of Zn-containing InPd dendrite during further ageing, which caused the overaging in the later stage of age-hardening process.

Biocompatible Materials↗
PubMed2005

Inhibition of the Na+-H+ exchanger with cariporide abolishes stretch-induced calcium but not sodium accumulation in mouse ventricular myocytes.

We address the question whether activation of the sodium-proton exchanger (NHE) does contribute to the stretch-induced accumulation of intracellular sodium and calcium in mouse ventricular myocytes. NHE-blocker cariporide (10 microM) were applied to the bath for 10 min. Axial stretch was applied for 2 min by increasing the distance between an adherent glass stylus and the patch pipette by 20%. Myocytes (stimulated at 3 Hz) were shock-frozen in diastole and the membrane currents monitored till cryofixation. Controls were treated identically, but not stretched. Total sodium and calcium concentrations ([Na], [Ca]=sum of free and bound Na and Ca) were measured by electron probe microanalysis (EPMA) in peripheral and central cytosol, mitochondria, nucleus and nuclear envelope. Cariporide did not reduce the stretch-activated negative current. The stretch-induced rise in [Na] was not different in the presence and in the absence of cariporide. Cariporide significantly reduced diastolic [Ca] in the cytosol of stretched myocytes. Since cariporide does not prevent the stretch-induced [Na] accumulation, we suggest that not NHE but the stretch-activated streptomycin-sensitive current I(SAC) causes the well documented stretch-induced [Na] accumulation. The discovery that cariporide prevents the stretch-induced rise in cytosolic [Ca] demonstrates an important additional effect of the drug on calcium handling.

Animals↗
PubMed2005

Evaluating the applicability of regulatory leaching tests for assessing the hazards of Pb-contaminated soils.

Soil contamination is a major environmental problem due to the ecological threat it poses. In this work, electron probe microanalysis (EPMA), X-ray diffraction (XRD), and leaching studies were employed to explain the different leaching behaviors of non-stabilized and stabilized soils. The applicability of the leaching fluids used in the toxicity characteristic leaching procedure (TCLP) and Australian Standards, AS 4439.1-1997 for assessing the hazards of contaminated soils was investigated as was the leaching of lead from soil stabilized by cement and buffered phosphate techniques. The results showed Pb speciation in the soil highly influenced metal leaching. The synthetic leaching fluids were unable to provide a reliable estimation of Pb concentration in the municipal landfill leachate (ML) due to the absence of organic ligands capable of forming stable complexes with the lead. Water provided the closest representation of lead leaching from the non-stabilized and phosphate stabilized soils while sodium tetraborate buffer was found to be suitable for cement-stabilized soil in a non-putrescible landfill leachate system. A comparison of stabilization methods revealed that the buffered phosphate technique was more suitable for stabilizing the lead in the soil relative to cement stabilization.

Environmental Pollution↗
PubMed2006

Spectral properties of some metal complexes derived from uracil-thiouracil and citrazinic acid compounds.

The reaction of FeCl(3) with uracil (H(2)L(1)), citrazinic acid (H(2)L(6)), 5-(phenylazo)citrazinic acid (H(2)L(7)), 5-(m-hydroxyphenylazo)citrazinic acid (H(2)L(8)) and 5-(m-nitrophenylazo)citrazinic acid (H(2)L(9)) leads to the formation of complexes with the empirical formula Fe(HL)(3).nH(2)O (n=1-3). All of the prepared complexes have octahedral complexation geometry where the azo group is not the reactive site for complexation. Thiouracil (H(2)L(2)) and the 5-(substituted phenylazo)thiouracil (H(2)L(3)-H(2)L(5)) ligands are bidentates on complexation with Co(II), Ni(II) and Cu(II). The complexes have been characterized by elemental analyses, IR, electronic spectra, magnetic susceptibility, DTA, electron spin resonance (copper complexes) and Mössbauer spectra (iron complexes). The coordination bond lengths between the metal ion and the active centers for complexation were calculated.

Acids↗
PubMed2006

Nickel(II) complexes of biologically active glutathione: spectroscopic, kinetics of thermal decomposition and XRPD studies.

Nickel(II) complexes of reduced glutathione (GSH) of general composition Na[Ni(L)(X)]H(2)O, where H(2)L=GSH; X=NO(3)(-), SCN(-), CH(3)CO(2)(-), Cl(-) have been synthesized and characterized by elemental analysis, infrared spectra, electronic spectra, magnetic susceptibility measurements, thermal and X-ray powder diffraction studies. Infrared spectra indicate deprotonation and coordination of cysteinyl sulphur and carboxylate oxygen of glycine residue with nickel ions. It indicates the presence of water molecule in all the complexes which has been supported by TG/DTA. The thermal behavior of complexes shows that water molecule is removed in first step-followed removal of anions and then decomposition of the ligand molecule in subsequent steps. General mechanisms describing the decomposition of the solid complexes are suggested. Kinetic and thermodynamic parameters were computed from the thermal decomposition data. The room temperature magnetic moment values for all the complexes lie in the range of 2.2-2.4BM, indicating departure from spin only values due to second order Zeeman effect. The electronic spectra indicate planar coordination geometry for all the complexes. Crystal data for Na[Ni(L)(CH(3)CO(2)(-))]H(2)O: tetragonal, space group P4/m, a=8.2004A, b=8.2004A, c=16.0226A, V=1077.47A(3), Z=2. Crystal data for Na[Ni(L)(Cl(-))]H(2)O: cubic, space group Pm3, a=16.1055A, b=16.1055A, c=16.1055A, V=4178.38A(3), Z=6. Crystal data for Na[Ni(L)(NO(3)(-))]H(2)O: tetragonal, space group P4/m, a=7.2121A, b=7.2121A, c=12.0200A, V=625.22A(3), Z=2.

Electron Probe Microanalysis↗
PubMed2006

Synthesis and spectroscopic studies on iron(III) complexes of 1-benzotriazol-1-yl-1-[(p-X-phenyl)hydrazono]propan-2-one.

A new series of iron(III) complexes are synthesized from the reaction of the polyfunctional ligands 1-benzotriazol-1-yl-1-[p-X-phenyl]hydrazono]propan-2-one (X=H, Cl, NO(2), CH(3) or OCH(3) corresponding to HL(1),HL(2), HL(3), HL(4) or HL(5), respectively, with iron(III) chloride in the presence of LiOH by the conventional and microwave induced energy methods. The conventional method led to the formation of [FeL(3)].nH(2)O but the microwave induced energy gave [FeLCl(2)], n=1-3 and L is the anion of HL(1)-HL(5). The complexes are characterized by the elemental analysis, molar conductivity, magnetic and spectral (FT-IR, UV-vis and ESR) studies. The magnetic and spectral studies showed that [FeLCl(2)] are polymeric octahedral, [Fe(L(1))(3)].H(2)O is a low spin octahedral and (d(xz),d(yz))(4) (d(xy))(1) ground state, [FeL(3)].nH(2)O, L=anion of HL(4) or HL(5) and are octahedral with intermediate spin (S=32) with ground state (d(xy))(2)(d(xz),d(yz))(3) electronic configuration while for the anions of HL(2) and HL(3), they have (t(2g))(3)(e(g))(5) admixed with (d(xy))(2)(d(xz),d(yz))(3) configurations. From the ESR data, the contribution of the high spin (S=52) and low spin (S=32) to the quantum mechanical spin intermediate (QMS), and the crystal field parameters Delta and V are calculated and related to the electronic and steric effects of the ligands. The electronic spectral data confirm that obtained from the ESR, and the different ligand field parameters as well as the pi-->t(2g), t(2g)-->e(g), e(g)-->pi*, pi-->pi* transitions are estimated and compared with that experimentally obtained.

Carbon↗
PubMed2004

Model based quantification of EELS spectra.

Recent advances in model based quantification of electron energy loss spectra (EELS) are reported. The maximum likelihood method for the estimation of physical parameters describing an EELS spectrum, the validation of the model used in this estimation procedure, and the computation of the attainable precision, that is, the theoretical lower bound on the variance of these estimates, are discussed. Experimental examples on Au and GaAs samples show the power of the maximum likelihood method and show that the theoretical prediction of the attainable precision can be closely approached even for spectra with overlapping edges where conventional EELS quantification fails. To provide end-users with a low threshold alternative to conventional quantification, a user friendly program was developed which is freely available under a GNU public license.

Arsenicals↗
PubMed2001

Probing the Mn oxidation states in the OEC. Insights from spectroscopic, computational and kinetic data.

Results from a variety of experimental techniques which have been used to define the oxidation levels of Mn and other components in the S states of the water oxidising complex in Photosystem II are reviewed. A self-consistent interpretation of Mn X-ray absorption near edge spectroscopy, UV-visible and near infrared spectroscopic data suggests that Mn oxidation occurs only on the S0-->S1 transition, and that all four Mn centres have formal oxidation state III thereafter. Ligand oxidation occurs on the transitions to S2 and S3. This is supported by high level quantum chemical calculations and an analysis of the kinetics of substrate water exchange, as recently determined by Wydrzynski et al. (this journal). One type of model for the catalytic site structure and water oxidation mechanism, consistent with these conclusions, is discussed. This model invokes magnetically separate oxo bridged dimers with water oxidation occurring by a concerted 2H+/2e- transfer mechanism, with one H transfer to a bridge oxygen on each dimer.

Calcium↗
PubMed2001

The tetra-manganese complex of photosystem II during its redox cycle - X-ray absorption results and mechanistic implications.

Using X-ray absorption spectroscopy (XAS), relevant information on structure and oxidation state of the water-oxidizing Mn complex of photosystem II has been obtained for all four semi-stable intermediate states of its catalytic cycle. We summarize our recent XAS results and discuss their mechanistic implications. The following aspects are covered: (a) information content of X-ray spectra (pre-edge feature, edge position, extended X-ray absorption fine-structure (EXAFS), dichroism in the EXAFS of partially oriented samples); (b) S(1)-state structure; (c) X-ray edge results on oxidation state changes; (d) EXAFS results on structural changes during the S-state cycle; (e) a structural model for the Mn complex in its S(3)-state; (f) XAS-based working model for the S(2)-S(3) transition; (g) XAS-based working model for the S(0)-S(1) transition; (h) potential role of hydrogen atom abstraction by the Mn complex. Finally, we present a specific hypothesis on the mechanism of dioxygen formation during the S(3)-(S(4))-S(0) transition. According to this hypothesis, water oxidation is facilitated by manganese reduction that is coupled to proton transfer from a substrate water to bridging oxides.

Electron Probe Microanalysis↗
PubMed1998

Biochemical and spectroscopic characterization of catechol oxidase from sweet potatoes (Ipomoea batatas) containing a type-3 dicopper center.

Two catechol oxidases have been isolated from sweet potatoes (Ipomoea batatas) and purified to homogeneity. The two isozymes have been characterized by EXAFS, EPR-, UV/Vis-spectroscopy, isoelectric focusing, and MALDI-MS and have been shown to contain a dinuclear copper center. Both are monomers with a molecular mass of 39 kDa and 40 kDa, respectively. Substrate specificity and NH2-terminal sequences have been determined. EXAFS data for the 39 kDa enzyme reveal a coordination number of four for each Cu in the resting form and suggest a Cu(II)-Cu(II) distance of 2.9 A for the native met form and 3.8 A for the oxy form.

Amino Acid Sequence↗
PubMed1978

Aluminum induced pulmonary granulomatosis.

The association of aluminum dusts and pulmonary fibrosis with emphysema in workers in the aluminum processing and manufacturing industries is well established. The early and minimal reactions of the lungs to the aluminum dusts are not known. This report presents the first case of pulmonary granulomatosis associated with aluminum inhalation. The occupational history of this patient was thoroughly examined, and the aluminum was identified by electron probe microanalysis of the lung biopsy specimen. The granulomatous response in this patient was similar to that observed in rabbits following aluminum dust inhalation. Hypersensitivity or individual idiosyncrasy may play a role in the development of the pulmonary granulomas following exposure to aluminum.

Adult↗
PubMed2000

Characterization and speciation of mercury-bearing mine wastes using X-ray absorption spectroscopy.

Mining of mercury deposits located in the California Coast Range has resulted in the release of mercury to the local environment and water supplies. The solubility, transport, and potential bioavailability of mercury are controlled by its chemical speciation, which can be directly determined for samples with total mercury concentrations greater than 100 mg kg(-1) (ppm) using X-ray absorption spectroscopy (XAS). This technique has the additional benefits of being non-destructive to the sample, element-specific, relatively sensitive at low concentrations, and requiring minimal sample preparation. In this study, Hg L(III)-edge extended X-ray absorption fine structure (EXAFS) spectra were collected for several mercury mine tailings (calcines) in the California Coast Range. Total mercury concentrations of samples analyzed ranged from 230 to 1060 ppm. Speciation data (mercury phases present and relative abundances) were obtained by comparing the spectra from heterogeneous, roasted (calcined) mine tailings samples with a spectral database of mercury minerals and sorbed mercury complexes. Speciation analyses were also conducted on known mixtures of pure mercury minerals in order to assess the quantitative accuracy of the technique. While some calcine samples were found to consist exclusively of mercuric sulfide, others contain additional, more soluble mercury phases, indicating a greater potential for the release of mercury into solution. Also, a correlation was observed between samples from hot-spring mercury deposits, in which chloride levels are elevated, and the presence of mercury-chloride species as detected by the speciation analysis. The speciation results demonstrate the ability of XAS to identify multiple mercury phases in a heterogeneous sample, with a quantitative accuracy of +/-25% for the mercury-containing phases considered. Use of this technique, in conjunction with standard microanalytical techniques such as X-ray diffraction and electron probe microanalysis, is beneficial in the prioritization and remediation of mercury-contaminated mine sites.

Absorptiometry, Photon↗
PubMed2001

Surface hardness change of restorative filling materials stored in saliva.

OBJECTIVES: This study was to investigate the effect of saliva used as storage liquid and the length of storage effect on surface hardnesses of Fuji IX (GP) (FIX), Dyract (DR), Z-100 and Estio LC (ELC). METHODS: The materials were mixed according to the manufacturers' instructions and immersed in distilled water or human parotid saliva. Vickers hardness number (HVN) was measured 1, 7, 20 and 40 days after the materials were mixed. HVN was calculated from the indentation diameter after 100 or 300g loading on their surface for 15s. The two methods of characterization used in this work were X-ray photoelectron spectroscopy (XPS) for surface chemical composition and electron probe microanalysis (EPMA) for depth profile analysis. RESULTS: Only in FIX, did HVN increase with time at both storage conditions, distilled water and saliva. The increase rate of the value was higher when stored in saliva than distilled water. After 40 days storage in saliva, the HVN value of FIX increased by 39%. The increase for storage in saliva for DR was 22%, ELC 16%, and Z100 3%, compared to 1 day storage in distilled water. Ca and P peaks caused by saliva were detected by XPS and EPMA analysis, but these peaks did not exist in either composite resin or polyacid-modified composite resin by EPMA analysis. SIGNIFICANCE: Saliva has the remarkable effect of increasing surface hardness of Fuji IX (GP).

Compomers↗