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PubMed1985

Spatiotemporal changes of EEG activity during waking-sleeping transition period.

To evaluate the spatiotemporal changes of EEG during waking-sleeping transition or hypnagogic period, spectral analysis of the five scalp EEG on the midline (Fpz, Fz, Cz, Pz and Oz) referenced to the left ear lobe was carried out on seven young male subjects. Power spectra from consecutive samples of 5.12 sec period with 0.2 Hz resolution were studied from 10 min before the manually scored stage 1 onset to 30 min after the onset of stage 1. The average power spectra over 1 min segments and corresponding coefficient of variation (CV) were determined for the frequency bands of delta (1-3 Hz), theta (4-7 Hz), alpha (8-12 Hz), sigma (13-15 Hz) and beta (16-19 Hz). The latency score was defined as the time elapsed from the onset of stage 1 to the first epoch when the frequency band power, using the ANOVA significantly increased (or decreased) in comparison with the average level at the onset of stage 1. Median latency scores for each band were similar to the Cz scores, with a ranking, from early to late, of: alpha (2 min), theta (3 min), delta (5 min) and sigma (5 min). Significant change was not observed on the beta band activity. In terms of the EEG areas, the shortest latency was found in the theta band activity of the Fz EEG (2 min), and the longest was the sigma band activity of the Fpz and Oz EEG (8 min). The average stage 2 latency was 3.5 min when it was measured as time elapsed between the onset of stage 1 and 2. The average curves of delta, theta and alpha band CVs, started to increase just before or immediately after stage 1 onset and continued to increase for about 10 min. If the increased CV or unsteadiness of EEG activity is taken as a characteristic of the hypnagogic period, hypnagogic states may be considered to have continued until about 10 min after the stage 1 onset. Delta-theta activity showed a rapid rise in power after the onset of stage 1 for all areas. Delta power at the occipital, however, increased more gradually, and consistently remained at a lower level. The differences of delta power between Oz and other four electrode sites became clear at 7 min after the onset of stage 1. These regional differences may reflect the termination of hypnagogic effects.(ABSTRACT TRUNCATED AT 400 WORDS)

Adult↗
PubMed2006

Chemical diffusion of CO in mixed CO + O adlayers and reaction-front propagation in CO oxidation on Pd(100).

Within the framework of a realistic atomistic lattice-gas model, we present the theoretical formulation and simulation procedures for precise analysis of the chemical diffusion flux of highly mobile CO within a nonuniform interacting mixed CO + O adlayer on a Pd(100) surface. The approach applies in both regimes of relatively immobile unequilibrated and fairly mobile near-equilibrated O adlayer distributions. Spatiotemporal behavior in surface reactions is controlled by chemical diffusion in mixed adlayers. Thus, we naturally integrate the above analysis with a previously developed multiscale modeling strategy to describe mesoscale reaction front propagation in CO oxidation on Pd(100). This treatment avoids using a simplified prescription of chemical diffusion and reaction kinetics as in traditional mean-field reaction-diffusion equation approaches.

Journal Article↗
PubMed2002

Reproductive functions of progesterone receptors.

The steroid hormone progesterone plays a central role in the reproductive events associated with pregnancy establishment and maintenance. Physiological effects of progesterone are mediated by interaction of the hormone with specific intracellular progesterone receptors (PRs) that are expressed as two protein isoforms, PR-A and PR-B. Both proteins arise from the same gene and are members of the nuclear receptor superfamily of transcription factors. Since these two isoforms were identified in the early 1970s, extensive controversy has existed regarding the selective contributions of the individual PR proteins to the physiological functions of progesterone. During the past decade, significant progress has been made in this regard using two complimentary approaches. First, analysis of the structural and functional relationships of each isoform using in vitro systems has generated compelling evidence to support the conclusion that PR-A and PR-B have different transcription activation properties when liganded to progesterone. Second, the advent of gene-targeting approaches to introduce subtle mutations into the mouse genome has facilitated the evaluation of the significance of observations made in vitro in a physiological context. Selective ablation of PR-A and PR-B proteins in mice using these technologies has allowed us to address the spatiotemporal expression and contribution of the individual PR isoforms to the pleiotropic reproductive activities of progesterone. Analysis of the phenotypic consequences of these mutations on female reproductive function has provided proof of concept that the distinct transcriptional responses to PR-A and PR-B observed in cell-based transactivation assays are, indeed, reflected in an ability of the individual isoforms to elicit distinct, physiological responses to progesterone. In PR-A knockout mice, in which the expression of the PR-A isoform is selectively ablated (PRAKO), the PR-B isoform functions in a tissue-specific manner to mediate a subset of the reproductive functions of PRs. Ablation of PR-A does not affect responses of the mammary gland or thymus to progesterone but instead results in severe abnormalities in ovarian and uterine function, leading to female infertility. These tissue-selective activities of PR-B are due to this isoform's ability to regulate a subset of progesterone-responsive target genes in reproductive tissues rather than to differences in its spatiotemporal expression relative to the PR-A isoform. More recent studies using PR-B knockout (PRBKO) mice have shown that ablation of PR-B does not affect ovarian, uterine, or thymic responses to progesterone but rather results in reduced mammary ductal morphogenesis. Thus, PR-A is both necessary and sufficient to elicit the progesterone-dependent reproductive responses necessary for female fertility, while PR-B is required to elicit normal proliferative responses of the mammary gland to progesterone. This chapter will summarize recent progress in our understanding of the selective contribution of the two PR isoforms to progesterone action.

Animals↗
PubMed2000

Identification of CCAAT/enhancer-binding protein alpha as a transactivator of the mouse amelogenin gene.

Amelogenin expression is ameloblast-specific and developmentally regulated at the temporal and spatial levels. In a previous transgenic mouse analysis, the expression pattern of the endogenous amelogenin gene was recapitulated by a reporter gene driven by a 2. 2-kilobase mouse amelogenin proximal promoter. To understand the molecular mechanisms underlying the spatiotemporal expression of the amelogenin gene during odontogenesis, the mouse amelogenin promoter was systematically analyzed in mouse ameloblast-like LS8 cells. Deletion analysis identified a minimal promoter (-70/+52) containing a CCAAT/enhancer-binding protein (C/EBP)-binding site upstream of the TATA box. In transient transfection assays, C/EBPalpha up-regulated the promoter activity in a dose-dependent manner. The C/EBP-binding site was necessary for both C/EBPalpha-mediated transactivation and basal promoter activity. Electrophoresis mobility shift assays demonstrated that C/EBPalpha bound to its cognate site in the amelogenin promoter and that the binding was specific. Endogenous C/EBPalpha was detected in LS8 cells, and overexpression of exogenous C/EBPalpha in LS8 cells was able to increase the expression level of the endogenous amelogenin protein. The activity of the amelogenin promoter in rat parotid Pa-4 cells and Madin-Darby canine kidney cells was minimal, ranging from 20 to 30% of the activity in ameloblast-like cells. Transient transfection experiments showed that C/EBPalpha transactivated the mouse amelogenin reporter gene in Pa-4 cells, but not in Madin-Darby canine kidney cells. Taken together, these data indicate that C/EBPalpha is a bona fide transcriptional activator of the mouse amelogenin gene in a cell type-specific manner.

Amelogenin↗
PubMed2006

Optical imaging of medullary ventral respiratory network during eupnea and gasping in situ.

In severe hypoxia, respiratory rhythm is shifted from an eupneic, ramp-like motor pattern to gasping characterized by a decrementing pattern of phrenic motor activity. However, it is not known whether hypoxia reconfigures the spatiotemporal organization of the central respiratory rhythm generator. Using the in situ arterially perfused juvenile rat preparation, we investigated whether the shift from eupnea to gasping was associated with a reconfiguration of the spatiotemporal pattern of respiratory neuronal activity in the ventral medullary respiratory network. Optical images of medullary respiratory network activity were obtained from male rats (4-6 weeks of age). Part of the medullary network was stained with a voltage-sensitive dye (di-2 ANEPEQ) centred both within, and adjacent to, the pre-Bötzinger complex (Pre-BötC). During eupnea, optical signals initially increased prior to the onset of phrenic activity and progressively intensified during the inspiratory phase peaking at the end of inspiration. During early expiration, fluorescence was also detected and slowly declined throughout this phase. In contrast, hypoxia shifted the respiratory motor pattern from eupnea to gasping and optical signals were restricted to inspiration only. Areas active during gasping showed fluorescence that was more intensive and covered a larger region of the rostral ventrolateral medulla compared to eupnea. Regions exhibiting peak inspiratory fluorescence did not coincide spatially during eupnea and gasping. Moreover, there was a recruitment of additional medullary regions during gasping that were not active during eupnea. These results provide novel evidence that the shift in respiratory motor pattern from eupnea to gasping appears to be associated with a reconfiguration of the central respiratory rhythm generator characterized by changes in its spatiotemporal organization.

Analysis of Variance↗
PubMed2004

Nonlinear color space and spatiotemporal MRF for hierarchical segmentation of face features in video.

This paper deals with the low-level joint processing of color and motion for robust face analysis within a feature-based approach. To gain robustness and contrast under unsupervised viewing conditions, a nonlinear color transform relevant for hue segmentation is derived from a logarithmic model. A hierarchical segmentation scheme is based on Markov random field modeling, that combines hue and motion detection within a spatiotemporal neighborhood. Relevant face regions are segmented without parameter tuning. The accuracy of the label fields enables not only face detection and tracking but also geometrical measurements on facial feature edges, such as lips or eyes. Results are shown both on typical test sequences and on various sequences acquired from micro- or mobile cameras. The efficiency of the method makes it suitable for real-time applications aiming at audiovisual communication in unsupervised environments.

Algorithms↗
PubMed2000

On the assessment of stability and patterning of speech movements.

Speech requires the control of complex movements of orofacial structures to produce dynamic variations in the vocal tract transfer function. The nature of the underlying motor control processes has traditionally been investigated by employing measures of articulatory movements, including movement amplitude, velocity, and duration, at selected points in time. An alternative approach, first used in the study of limb motion, is to examine the entire movement trajectory over time. A new approach to speech movement trajectory analysis was introduced in earlier work from this laboratory. In this method, trajectories from multiple movement sequences are time- and amplitude-normalized, and the STI (spatiotemporal index) is computed to capture the degree of convergence of a set of trajectories onto a single, underlying movement template. This research note describes the rationale for this analysis and provides a detailed description of the signal processing involved. Alternative interpolation procedures for time-normalization of kinematic data are also considered.

Adult↗
PubMed2007

Spatiotemporal representations in the olfactory system.

A complete understanding of the mechanisms underlying any kind of sensory, motor or cognitive task requires analysis from the systems to the cellular level. In olfaction, new behavioural evidence in rodents has provided temporal limits on neural processing times that correspond to less than 150ms--the timescale of a single sniff. Recent in vivo data from the olfactory bulb indicate that, within each sniff, odour representation is not only spatially organized, but also temporally structured by odour-specific patterns of onset latencies. Thus, we propose that the spatial representation of odour is not a static one, but rather evolves across a sniff, whereby for difficult discriminations of similar odours, it is necessary for the olfactory system to "wait" for later-activated components. Based on such evidence, we have devised a working model to assess further the relevance of such spatiotemporal processes in odour representation.

Animals↗
PubMed1999

Ways of looking at calcium.

What we understand about signalling pathways depends very much on the ways we can measure them. I review ways of measuring calcium and explore how changes in methods have led to new ways of thinking about calcium signals. I also suggest how the ways we have of looking at calcium will influence the analysis of other signalling pathways that, until now, have not been studied with the spatiotemporal precision available to those studying calcium signalling.

Animals↗
PubMed2000

Relationship between gene expression domains of Xsnail, Xslug, and Xtwist and cell movement in the prospective neural crest of Xenopus.

The markers Xslug, Xsnail, and Xtwist all are expressed in the presumptive neural folds and are thought to delineate the presumptive neural crest. However, their interrelationship and relative spatiotemporal distributions are not well understood. Here, we present a detailed in situ hybridization analysis of the relative patterns of expression of these transcription factors from gastrulation through neurulation and post-neural crest migration. The three genes mark the prospective neural crest and roof plate, coming on sequentially, with Xsnail preceding Xslug preceding Xtwist. By combining gene expression analysis with a fate map of the same region using DiI labeling, we determined the correspondence between early and late domains of gene expression. At the beginning of gastrulation, Xsnail is present in a unique domain of expression in a lateral region of the embryo in both superficial and deep layers of the ectoderm, as are Xslug and Xtwist. During gastrulation and neurulation, the superficial layer moves faster toward the dorsal midline than the deep layer, producing a relative shift in these cell populations. By early neurula stage, the Xsnail domain is split into a medial domain in the superficial ectoderm (fated to become the roof plate) and a lateral domain in the deep layer of the ectoderm (fated to become neural crest). Xsnail is down-regulated in the most anterior neural plate and up-regulated in the posterior neural plate. Our results show that changes in the expression of Xsnail, Xslug, and Xtwist are a consequence of active cell movement in some regions coupled with dynamic changes in gene expression in other regions.

Animals↗
PubMedDate not supplied

The fractal architecture of cytoplasmic organization: scaling, kinetics and emergence in metabolic networks.

In this work, we highlight the links between fractals and scaling in cells and explore the kinetic consequences for biochemical reactions operating in fractal media. Based on the proposal that the cytoskeletal architecture is organized as a percolation lattice, with clusters emerging as fractal forms, the analysis of kinetics in percolation clusters is especially emphasized. A key consequence of this spatiotemporal cytoplasmic organization is that enzyme reactions following Michaelis-Menten or allosteric type kinetics exhibit higher rates in fractal media (for short times and at lower substrate concentrations) at the percolation threshold than in Euclidean media. As a result, considerably faster and higher amplification of enzymatic activity is obtained. Finally, we describe some of the properties bestowed by cytoskeletal organization and dynamics on metabolic networks.

Algorithms↗
PubMed2003

Characterization of the Xenopus galectin family. Three structurally different types as in mammals and regulated expression during embryogenesis.

We have isolated six novel galectin cDNAs from a Xenopus laevis kidney cDNA library. The newly identified X. laevis galectins (xgalectins) comprise one proto type (xgalectin-Vb), one chimera type (xgalectin-VIIa), and four tandem repeat types (xgalectin-IIb, -IIIb, -VIa, and -VIIIa). Thus, together with those mentioned in our previous work (Shoji, H., Nishi, N., Hirashima, M., and Nakamura, T. (2002) Glycobiology 12, 163-172), the 12 xgalectins are classified into three types based on their domain structures, as in mammals. The xgalectins whose counterparts in other species have not been identified (xgalectin-IVa, -Vb, and -VIa) were confirmed to possess lactose-binding activity by expression of their recombinant forms. This shows that they truly function as animal lectins. The protein purification study revealed that the major xgalectins in kidney are xgalectin-Ib, -IIa, -IIb, -IIIa, and -VIIa. The mRNAs of xgalectin-IIb, -IIIb, -Vb, and -VIa were localized to specific adult tissues, whereas those of xgalectin-VIIa and -VIIIa were broadly distributed. The temporal expression patterns of the mRNAs of the 12 xgalectins during embryogenesis were analyzed and categorized into three groups: 1) mRNA observed to exist throughout embryogenesis, i.e. maternal mRNA also exists (xgalectin-Ia, -IIa, -IIIa, -IIIb, -Va, -VIIa, and -VIIIa); 2) mRNA observed from the gastrula stage (xgalectin-VIa); and 3) mRNA observed from the tail bud or the tadpole stage (xgalectin-Ib, -IIb, -IVa, and -Vb). The mRNA of the most abundant xgalectin in embryos, xgalectin-VIIa, was localized to the surface layer of embryos, the epidermis, the cement gland, and various placodes. Xgalectin-VIIa protein was also observed to exist throughout embryogenesis by Western blot analysis with specific antiserum. These results show that the expression of each member is spatiotemporally regulated from eggs to adulthood, suggesting that galectins play multiple roles not only in adults, but also in development.

Amino Acid Sequence↗
PubMed2003

Marangoni instability of a thin liquid film resting on a locally heated horizontal wall.

Long-wave Marangoni instabilities can be induced thermally on a thin liquid layer overlying a horizontal solid substrate with either a uniform or a nonuniform base temperature. For a nonuniform base temperature, the film height thickens near the region where temperature gradients are negligible and severely thins upstream; "fingering" patterns are observed in this region. These states are related to the patterns observed in the isothermal case, which are reasonably well understood. The stability of these spatiotemporally evolving states to transverse disturbances is investigated using a transient growth-type analysis. It is found that the band of unstable wave numbers exhibiting growth is strongly dependent on the lateral extent of the heating source. Inspection of surface reconstructions of the film thickness profiles reveals the existence of three-dimensional patterns in the thinning region behind the thickened front.

Journal Article↗
PubMed2006

Modulation instability in nonlinear negative-index material.

We investigate modulation instability (MI) in negative-index material (NIM) with a Kerr nonlinear polarization based on a derived (3+1)-dimensional nonlinear Schrödinger equation for ultrashort pulse propagation. By a standard linear stability analysis, we obtain the expression for instability gain, which unifies the temporal, spatial, and spatiotemporal MI. It is shown that negative refraction not only brings some new features to MI, but also makes MI possible in ordinary material in which it is otherwise impossible. For example, spatial MI can occur in the defocusing regime, while it only occurs in the focusing regime in ordinary material. Spatiotemporal MI can appear in NIM in the case of anomalous dispersion and defocusing nonlinearity, while it cannot appear in ordinary material in the same case. We believe that the difference between the MI in NIM and in ordinary material is due to the fact that negative refraction reverses the sign of the diffraction term, with the signs of dispersion and nonlinearity unchanged. The most notable property of MI in NIM is that it can be manipulated by engineering the self-steepening effect by choosing the size of split-ring resonator circuit elements. To sum up the MI in ordinary material and in NIM, MI may occur for all the combinations of dispersion and nonlinearity.

Journal Article↗
PubMed2003

Spatiotemporal distribution of airborne mould spores in apartments.

Indoor air contamination with mould spores currently experiences an increasing interest with respect to their relevance to health. To assess adverse health effects, epidemiological studies combine the health outcome of individuals with their concomitant exposure to airborne spores, which is observed, for example, during the current month. While the latter is representative for the studied period, health effects might also be the result of long term-exposure or emerge in consequence of a peak of pollution throughout the year. To consider such questions, additional information about the spatiotemporal distribution of airborne spores is necessary. This paper aims at elucidating the spatial and temporal variation of spore concentrations in Leipzig, Germany. The analysis is based on 1165 matched pairs of indoor and outdoor measurements taken in the period 1998-2002. All data were collected in the frame of previous epidemiological studies and refer to apartments. The analysis comprised spore concentrations (as CFU m(-3) in air) of the most important genera, such as Penicillium, Aspergillus, Alternaria, Mucorales, Cladosporium, and also for yeasts. We found two groups of fungi differing in their spatiotemporal distribution. As this behaviour can be explained by the predominant origin and growing conditions, we call them indoor-relevant and outdoor-relevant genera. Penicillium species are a representative of the former group, while the latter is well represented by Cladosporium. In the studied period we did not observe a clear trend in the spore concentration. Outdoors there is a year-to-year variation of Cladosporium spore concentrations, which follow the prevalent climatic conditions. For the spore concentration of the outdoor-relevant group a significant annual cycle was observed. Highest concentrations occurred during the summer months and were about 100 x the winter burden. That means, for a direct comparison of measurements of spore concentrations taken during different months the season has to be considered. We summarise the findings in a seasonal model, which is fitted to our measurements. Based on the model we developed a procedure for seasonal adjustment, which enabled us to estimate the annual peak spore concentration utilising one monthly observation.

Air Microbiology↗
PubMedDate not supplied

Quadrature subunits in directionally selective simple cells: counterphase and drifting grating responses.

Here we examine further the basis for directional selectivity (DS) in simple cells of the cat's striate cortex. We use a distinctly different input stimulus and different analysis of the output signal for the same type of space-time inseparable receptive field (RF) that was measured with flashing bars in the companion paper (Emerson, 1997). As in the companion paper, we have mimicked a popular "linear" model with a single "branch" that consists of a linear spatiotemporal filter followed by a soft threshold, which should mimic any simple cells that have a single subunit. Counterphase sinusoidal measurements of such a configuration always generate elliptically shaped polar plots of amplitude versus temporal phase, often pinched along the minor axis because of a high threshold. However, for many spatiotemporal frequencies, such polar phase plots, as measured in simple cells by others, show a consistent rotational phase skew. Here we apply counterphase analysis to the same 2-branch model as developed in the companion paper. We show that the model accounts for the skew as the summation of signals from linear filters separated spatially and temporally by approximately 90 deg (i.e. in spatiotemporal phase quadrature), each separated from the output stage by a soft-threshold nonlinearity. We also prove conclusively that such skew cannot be generated by a single-subunit configuration. This demonstration supports the proposed two-subunit structure for DS simple cells, such as in the example from the companion paper, which has strong linear contributions from its inseparable RF. The presence of at least two nonlinear subunits appears to be an obligatory concomitant of DS in all visual cortical cells. The primary function of these subunits may be to enhance the strength of responses to images moving in the preferred direction, as in complex cells. However, subunits may also aid in identifying the moving object through overcoming, at least partially, the phase-concealing properties of the neuron's threshold by generating a steady signal that effectively decreases the threshold for the preferred direction.

Animals↗
PubMed2005

Sustained Wnt protein expression in chondral constructs from mesenchymal stem cells.

Wnt genes encode a number of secreted glycoproteins which are closely associated with the cell surface and the extracellular matrix. Recently, members of Wnt family have been implicated in regulating chondrocyte differentiation, but their roles in the chondrogenic process are not fully understood. To contribute to an understanding of the roles of Wnts during chondrogenesis, we have analysed the spatiotemporal expression patterns of Wnt using in vitro models for chondrogenesis of human bone marrow-derived mesenchymal stem cells (hMSCs). In chondrogenic aggregate culture system, RT-PCR analysis revealed expression of Wnt5a and Wnt4 during late chondrogenesis (days 10 and 15). Immunohistochemical analysis showed widespread distribution of Wnt5a and Wnt4 throughout the aggregates at this late phase of culture (days 14 and 21). In addition, in this aggregate culture system, immunohistochemical staining of Wnt4 and Wnt5a showed similar spatiotemporal expression patterns to that of type II collagen or type X collagen. To confirm the results obtained by immunostaining, the specificity of the anti-Wnt4 or anti-Wnt5a antibody was assessed by Western blot analysis. Of Wnt4 and Wnt5a, only Wnt5a was immunodetectable by Western blot analysis. Western blot analysis showed that Wnt5a was expressed as two different molecular weight forms of 40 and 44 kDa. Treatment with PNGase F, which removes N-linked oligosaccharides, revealed that the mass difference between these two forms could be accounted for by the N-glycosylation status of the protein. When hMSCs were seeded on a porous gelatin sponge, immunolocalization studies showed that type II collagen and type X collagen were detected particularly at the periphery at day 7 of culture. In contrast, Wnt4 and Wnt5a showed even distribution throughout the hMSC/gelatin sponge constructs. Their different spatial expression patterns suggest that Wnt4 and Wnt5a proteins are not functionally linked to type II collagen and type X collagen synthesis in in vitro chondrogenic models of hMSCs.

Blotting, Western↗
PubMed1997

Study of the EEG phenomenon of high-frequency bursts in the neocortical electrical activity of dogs in the process of alimentary instrumental learning.

We studied the electroencephalographic (EEG) phenomenon of high-frequency (HF) bursts (within the limits of 60-170 cycle, 70-80 microV) in the electrical activity (EA) of the brain (1-200 Hz) of dogs in the process of alimentary instrumental conditioning. These bursts appeared at the stage of generalization in a number of neocortical areas in the interstimulus intervals at the background EA, which was at lower amplitudes (10-40 microV). Application of novel strategies developed by us to the primary analysis of EA realization (in particular, introduction of inhomogeneity factor and activation index) enabled estimation the amplitude-frequency inhomogeneity of EA, namely, HF bursts. The regional peculiarities of HF bursts were revealed by means of the technique, developed by us, that was based on expansion of the EA variations into a system of half-waves and construction of distribution maps on the basis of their parameters. The presented data verify our earlier findings obtained with the use of other techniques (fast Fourier transform analysis and factor analysis). These data testify to differential participation of cortical areas (even those that are within 3-5 mm of each other) in the spatiotemporal organization of potentials that is characteristic for a given learning paradigm.

Animals↗