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PubMed2003

[Role of man in the history of vegetation of the Ellero valley (maritime Alps, Italy)].

The pollen analysis of a sediment core from a peat bog (Rifugio Mondovi) at the mountain belt (1760 m) in the Ellero Valley (Italian Maritime Alps) shows the postglacial vegetation history. The sequence starts at 12,000 BP during a peak of pine pollen; this first phase shows a low representation of birch and the presence of Tilia. Younger Dryas is characterised by increasing percentages of Artemisia, showing the presence of deciduous Quercus, fir and beech. Elm appears at the beginning of the Holocene during the second pine peak (9800 BP). A 3000-year hiatus is present. Sedimentation resumes at 6000 BP in a Rhododendron fir-wood. The present timberline at 1500 m, at the limit of the beech wood, is a result of the decline of the fir-wood at 2600 BP, which allowed an expansion of beech. During this period, there was a continual increase in Gramineae and deciduous oak and the first occurrences of evergreen oak are observed. The development of larch occurs at 1800 BP, together with walnut, chestnut, cereals and vine.

Anthropology↗
PubMed2003

Sidewall functionalization of single-walled carbon nanotubes by addition of dichlorocarbene.

We report the sidewall functionalization of soluble HiPco single-walled carbon nanotubes (SWNTs) by addition of dichlorocarbene. The dichlorocarbene-functionalized SWNTs [(s-SWNT)CCl(2)] retain their solubility in organic solvents such as tetrahydrofuran and dichlorobenzene. The degree of dichlorocarbene functionalization was varied between 12% and 23% by using different amounts of the dichlorocarbene precursor. Because the addition of dichlorocarbene saturates the carbon atoms on the sidewall of the SWNTs and effectively replaces the delocalized partial double bonds with a cyclopropane functionality, the optical spectra of the SWNTs change dramatically. We estimate that the saturation of 25% of the pi-network electronic structure of the SWNTs is sufficient to remove all vestiges of the interband transitions in the infrared spectrum. The transitions at the Fermi level in the metallic SWNTs that appear in the far-infrared (FIR) region of the spectrum show a dramatic decrease of intensity on dichlorocarbene functionalization. The FIR region of the spectrum allows a clear differentiation between the covalent and the ionic chemistry of SWNTs. In contrast with covalent functionalization, we show that reaction of the SWNTs with bromine vapor leads to a strong increase in absorptions at the Fermi level that is observable in the FIR due to hole doping of the semiconducting SWNTs. Thermal treatment of the (s-SWNT)CCl(2) above 300 degrees C resulted in the breakage of C-Cl bonds, but did not restore the original electronic structure of the SWNTs.

Journal Article↗
PubMed2004

Fetal cardiac dysfunction in preterm premature rupture of membranes.

BACKGROUND: Preterm premature rupture of membranes (PROM) is associated with one-third of preterm births. In about 50% of preterm PROM cases, the fetuses will elicit a fetal inflammatory response syndrome (FIRS). FIRS is associated with the impending onset of preterm labor, periventricular leukomalacia, neonatal sepsis, and long-term handicap, including the development of bronchopulmonary dysplasia and cerebral palsy. The fetal myocardium is a potential target organ of proinflammatory cytokines released during FIRS. The objective of this study was to determine whether preterm PROM is associated with functional changes in the fetal heart, as determined by fetal echocardiography. METHODS: A retrospective study was conducted to assess the diastolic function of fetuses with preterm PROM with documented microbial invasion of the amniotic cavity (n = 25), preterm PROM without microbial invasion of the amniotic cavity (n = 42), and fetuses from normal pregnancies (control group = 150). Pregnancies with multiple gestation, fetal distress, fetuses that were small for gestational age, and major congenital anomalies were excluded. Fetal echocardiography studies were performed with two-dimensional ultrasound, color Doppler imaging and pulsed Doppler ultrasound. Non-parametric statistics were used for comparisons. A p value of < 0.05 was considered significant. RESULTS: The prevalence of positive amniotic fluid cultures for micro-organisms in patients with preterm PROM was 35.8% (24/67). Ureaplasma urealyticum was the most frequent isolate, either alone (41.7%; 10/24) or with other micro-organisms (29.2%; 7/24). Fetuses with preterm PROM had a higher delta early diastolic filling/atrial contraction (E/A) peak velocity ratio, a higher delta E/A velocity-time integral (VTI) ratio, a lower delta A peak velocity, a lower delta A VTI, and a lower A VTI/total VTI ratio in the mitral valve compared to those with uncomplicated pregnancies. The delta E/A peak velocity ratio was significantly higher and the delta A VTI significantly lower in fetuses with preterm PROM and microbial invasion of the amniotic cavity than in those with preterm PROM without microbial invasion of the amniotic cavity. CONCLUSIONS: Preterm PROM is associated with changes in fetal cardiac function consistent with increased left ventricular compliance. These observations were also noted in fetuses with microbial invasion of the amniotic cavity. Our findings suggest that fetal cardiac function is altered in preterm PROM and, in particular, in cases with intra-amniotic infection.

Echocardiography↗
PubMed1998

A model of dry matter partitioning in trees.

In mechanistic growth models, the description of assimilate allocation or dry matter partitioning plays a key role. Although theoretical concepts of allocation exist, they include many parameters that cannot be quantified. Therefore, many growth models use descriptive keys that represent the proportions of dry matter or carbohydrates assigned to each plant component. I have developed a model to describe the dynamic partitioning of dry matter in individual trees, and used it to investigate the effects of growth conditions on the partitioning pattern in Douglas-fir (Pseudotsuga menziesii (Mirb.) Franco) and beech (Fagus sylvatica L.). The model estimates the fractions of total available dry matter that should go to certain plant parts, based on the concept of structural balances. Both mechanistic and allometric relationships between tree components are used to model conditions for the dynamic distribution of dry matter. The model was to used to estimate the effects of dominance position, site conditions, and thinning on growth partitioning. The fractions of the annual current increment of total dry matter gradually changed with tree age, but the changes were relatively small, especially after age 20. Compared with beech, Douglas-fir invested more dry matter in foliage, especially at the cost of the branch and stem components. Trees of average basal area invested more dry matter in branches and less in stem than suppressed trees, and their estimated increase in stem diameter over time generally fitted the yield table data well. Stem diameter development was underestimated at higher ages only in the case of a Douglas-fir tree of average basal area on a poor site. Over time, the proportion of standing biomass in foliage and fine root fractions showed a gradual decline, whereas there was a gradual increase in the proportion of standing biomass in the stem fraction. These age-related changes were attributed to different loss rates among components. Analysis of the effects of thinning revealed that a discontinuous reduction in stem number results in a slow decrease in partitioning to the stem. The most obvious response to thinning consisted in a sharp decrease in partitioning to fine roots and foliage, and an increased investment in branches. Stem diameter growth appeared relatively constant in response to thinning, indicating that it will increase almost linearly with time. I conclude that the model is able to reproduce the development of an individual tree over time, both in terms of stem diameter and biomass. The model is thus suitable for simulating the effects of competition for resources on growth and development of forest stands.

Journal Article↗
PubMed2002

Enhanced tolerance of photosynthesis to high-light and drought stress in Pseudotsuga menziesii seedlings grown in ultraviolet-B radiation.

We investigated the effects of an ambient dose of ultraviolet-B (UV-B) radiation on chamber-grown Pseudotsuga menziesii var. glauca (Beissn.) Franco (Douglas-fir) seedlings, to determine if the presence of UV-B radiation in the growth light regime induces tolerance to environmental stresses such as high light and drought. Douglas-fir seedlings were grown without UV-B radiation or with 6 kJ m-2 day-1 of biologically effective UV-B, which is ambient for the intermountain regions of Idaho. Non-stressed seedlings grown with UV-B radiation had 35% lower seedling dry mass, 36% higher concentrations of UV-B absorbing compounds per unit leaf area, 30% lower stomatal frequencies, 25% lower light-saturated photochemical efficiencies of Photosystem II and 45% lower light-saturated stomatal conductance than non-stressed seedlings grown without UV-B radiation. After 4 days of high-light stress, seedlings grown with UV-B radiation had 32% higher light-saturated carbon assimilation rates (A(CO2)) than seedlings grown without UV-B radiation. After water was withheld from the seedlings for up to 15 days, seedlings grown with UV-B radiation had 50% higher A(CO2) and 40% higher seedling water potentials than seedlings grown without UV-B radiation. The results support the hypothesis that UV-B radiation can act as an environmental signal to induce tolerance to high-light and drought stress in Douglas-fir seedlings. Possible mechanisms for the enhanced stress tolerance are discussed.

Dehydration↗
PubMed2002

Hydraulic redistribution of soil water during summer drought in two contrasting Pacific Northwest coniferous forests.

The magnitude of hydraulic redistribution of soil water by roots and its impact on soil water balance were estimated by monitoring time courses of soil water status at multiple depths and root sap flow under drought conditions in a dry ponderosa pine (Pinus ponderosa Dougl. ex Laws) ecosystem and in a moist Douglas-fir (Pseudotsuga menziesii (Mirb.) Franco) ecosystem. The fate of deuterated water applied to small plots to create a strong horizontal soil water potential gradient was also monitored to assess the potential for horizontal redistribution of water and utilization of redistributed water by co-occurring shallow-rooted plants. In a 20-year-old Douglas-fir stand, approximately 28% of the water removed daily from the upper 2 m of soil was replaced by nocturnal hydraulic redistribution during late August. In an old-growth ponderosa pine stand, approximately 35% of the total daily water utilization from the upper 2 m of soil appeared to be replaced by hydraulic redistribution during July and August. By late September, hydraulic redistribution in the ponderosa pine stand was no longer apparent, even though total water use from the upper 2 m of soil was nearly identical to that observed earlier. Based on these results, hydraulic redistribution would allow 21 and 16 additional days of stored water to remain in the upper soil horizons in the ponderosa pine and Douglas-fir stands, respectively, after a 60-day drought. At both sites, localized applications of deuterated water induced strong reversal of root sap flow and caused soil water content to cease declining or even temporarily increase at locations too distant from the site of water application to have been influenced by movement of water through the soil without facilitation by roots. Xylem water deuterium values of ponderosa pine seedlings suggested utilization of redistributed water. Therefore, hydraulic redistribution may enhance seedling survival and maintain overstory transpiration during summer drought. These first approximations of the extent of hydraulic redistribution in these ecosystems suggest that it is likely to be an important process in both wet and dry forests of the Pacific Northwest.

Ecosystem↗
PubMed2002

Use of a physiological process model with forestry yield tables to set limits on annual carbon balances.

We present an approach that sets limits on annual carbon fluxes for different aged forests by using a simple process-based model (3-PG) and information derived from yield tables and local weather stations. Given a measure of height-growth potential, model predictions are constrained to match stand dynamics described in yield tables. Thus constrained, the model can provide reasonable annual estimates of gross photosynthesis under a specified climate, even with inexact knowledge of soil properties. If we assume that leaf litterfall and fine-root turnover approach equilibrium at canopy closure, maximum net annual ecosystem exchange can also be predicted from modeled estimates of these two detrital components and estimates of foliage, branch, stem and coarse-root production. The latter four components of production are predicted from allometric relationships with mean stem diameter. The approach is demonstrated for Douglas-fir (Pseudotsuga menziesii (Mirb.) Franco) stands between Ages 20 and 150 years growing under conditions typical of those at Wind River, Washington, USA. Gross photosynthesis (Pg) by Douglas-fir at Ages 20, 70 and 150 years with leaf area indices (L) of 8.1, 6.9 and 4.0 was predicted at 1630, 1580 and 1160 g C m-2 year(1, respectively. Maximum net ecosystem production (Pe) for the same range in age classes was predicted to average 275, 294 and 207 g C m-2 year-1, respectively. The predicted reductions in L for older stands do not occur because other species fill the canopy gaps created by natural mortality of Douglas-fir. As a result of the development of an understory, total Pg is predicted to decrease only slightly with the aging of the overstory. Estimates of Pe exclude respiration from coarse woody debris, although additions of this component are provided annually by the model. The process-based modeling approach, constrained by yield table estimates of stand properties, sets reasonable limits on annual carbon exchange and suggests which environmental variables deserve careful monitoring to refine estimates of carbon fluxes.

Carbon↗
PubMed2003

Reliance on stored water increases with tree size in three species in the Pacific Northwest.

In tall old forests, limitations to water transport may limit maximum tree height and reduce photosynthesis and carbon sequestration. We evaluated the degree to which tall trees could potentially compensate for hydraulic limitations to water transport by increased use of water stored in xylem. Using sap flux measurements in three tree species of the Pacific Northwest, we showed that reliance on stored water increases with tree size and estimated that use of stored water increases photosynthesis. For Douglas-fir (Pseudotsuga menziesii (Mirb.) Franco), water stored in xylem accounted for 20 to 25% of total daily water use in 60-m trees, whereas stored water comprised 7% of daily water use in 15-m trees. For Oregon white oak (Quercus garryana Dougl. ex Hook.), water stored in xylem accounted for 10 to 23% of total daily water use in 25-m trees, whereas stored water comprised 9 to 13% of daily water use in 10-m trees. For ponderosa pine (Pinus ponderosa Dougl. ex Laws.), water stored in xylem accounted for 4 to 20% of total daily water use in 36-m trees, whereas stored water comprised 2 to 4% of daily water use in 12-m trees. In 60-m Douglas-fir trees, we estimated that use of stored water supported 18% more photosynthesis on a daily basis than would occur if no stored water were used, whereas 15-m Douglas-fir trees gained 10% greater daily photosynthesis from use of stored water. We conclude that water storage plays a significant role in the water and carbon economy of tall trees and old forests.

Northwestern United States↗
PubMed1989

Relationships among cold hardiness, root growth potential and bud dormancy in three conifers.

Greenhouse-cultured, container-grown ponderosa pine (Pinus ponderosa var. scopulorum Engelm.), interior Douglas-fir (Pseudotsuga menziesii var. glauca (Beissn.) Franco) and Engelmann spruce (Picea engelmannii (Parry) Engelm.) were cold acclimated and deacclimated in growth chambers over 19 weeks. Stem cold hardiness, total new root length at 14 days and days to bud break were measured weekly. Relationships among cold hardiness, root growth potential (RGP) and bud dormancy suggest that cold hardiness, which can be measured quickly, could provide a useful basis for estimating the two other parameters. During cold acclimation, there was a lag period in which stem cold hardiness remained at -15 degrees C and RGP was at a minimum, in all three species. Douglas-fir and Engelmann spruce buds remained fully dormant during this lag period. Ponderosa pine buds had no chilling requirement for the loss of dormancy, and reached quiescence during the lag period. Immediately following the lag period, as stem cold hardiness progressed to -22 degrees C, RGP increased to a high plateau in all three species, and Douglas-fir and Engelmann spruce buds approached quiescence. Cold deacclimation and bud development began immediately on exposure to warm, long days, but RGP remained high until stem cold hardiness returned to approximately -15 degrees C. At bud break, cold hardiness and RGP were at the minimum.

Journal Article↗
PubMed1991

Importance of the method of leaf area measurement to the interpretation of gas exchange of complex shoots.

Net CO(2) uptake in full sunlight, total leaf area (TLA), projected leaf area of detached leaves (PLA), and the silhouette area of attached leaves in their natural orientation to the sun at midday on June 1 (SLA) were measured for sun shoots of six conifer species. Among species, TLA/SLA ranged between 5.2 and 10.0 (x bar = 7.3), TLA/PLA ranged between 2.5 and 2.9 (x bar = 2.7) and PLA/SLA ranged between 2.0 and 3.7 (x bar = 2.2). These ratios were reflected in the ratios of net photosynthesis computed on the basis of the three measures of leaf area. The much smaller values for TLA/PLA compared with the values for TLA/SLA indicate that leaf orientation effects, or shading, or both, caused more variation in the interception of solar radiation than did variation in leaf geometry (i.e., cross-section). Silhouette leaf area of lodgepole pine, (Pinus contorta spp. latifolia) and subalpine fir (Abies lasiocarpa) shoots measured at the summer solstice varied almost 2-fold with diurnal changes in solar altitude and azimuth. Sun shoots of both species and shade shoots of lodgepole pine had the greatest SLA during the early morning and late afternoon. The midday decline in SLA was related to the relatively upright orientation of needles of subalpine fir sun shoots and the relatively upright orientation of both sun and shade shoots of lodgepole pine. Shade shoots of subalpine fir reached a maximum in SLA at midday and this was related to the near horizontal orientation both of the shoots and the needles on them.

Journal Article↗
PubMed2000

Observation of out-of-phase bilayer plasmons in YBa(2)Cu(3)O(7-delta)

The temperature dependence of the c-axis optical conductivity sigma(omega) of optimally and overdoped YBa2Cu3Ox ( x = 6.93 and 7) is reported in the far- (FIR) and midinfrared (MIR) range. Below T(c) we observe a transfer of spectral weight from the FIR not only to the condensate at omega = 0, but also to a new peak in the MIR. This peak is naturally explained as a transverse out-of-phase bilayer plasmon by a model for sigma(omega) which takes the layered crystal structure into account. With decreasing doping the plasmon shifts to lower frequencies and can be identified with the surprising and so far not understood FIR feature reported in underdoped bilayer cuprates.

Journal Article↗
PubMed2003

Brilliant, coherent far-infrared (THz) synchrotron radiation.

A new technology for generating steady state, brilliant, broadband, coherent, far-infrared (FIR) radiation in electron storage rings is presented, suitable for FIR spectroscopy. An FIR power increase of up to 100 000 compared to the normal, incoherent synchrotron radiation in the range of approximately 5 to approximately 40 cm(-1) could be achieved. The source is up to 1000 times more brillant compared to a standard Hg arc lamp. The coherent synchrotron radiation is produced in a "low alpha" optics mode of the synchrotron light source BESSY, by bunch shortening and non-Gaussian bunch deformation.

Journal Article↗
PubMed2002

Clutter filter design for ultrasound color flow imaging.

For ultrasound color flow images with high quality, it is important to suppress the clutter signals originating from stationary and slowly moving tissue sufficiently. Without sufficient clutter rejection, low velocity blood flow cannot be measured, and estimates of higher velocities will have a large bias. The small number of samples available (8 to 16) makes clutter filtering in color flow imaging a challenging problem. In this paper, we review and analyze three classes of filters: finite impulse response (FIR), infinite impulse response (IIR), and regression filters. The quality of the filters was assessed based on the frequency response, as well as on the bias and variance of a mean blood velocity estimator using an autocorrelation technique. For FIR filters, the frequency response was improved by allowing a non-linear phase response. By estimating the mean blood flow velocity from two vectors filtered in the forward and backward direction, respectively, the standard deviation was significantly lower with a minimum phase filter than with a linear phase filter. For IIR filters applied to short signals, the transient part of the output signal is important. We analyzed zero, step, and projection initialization, and found that projection initialization gave the best filters. For regression filters, polynomial basis functions provide effective clutter suppression. The best filters from each of the three classes gave comparable bias and variance of the mean blood velocity estimates. However, polynomial regression filters and projection-initialized IIR filters had a slightly better frequency response than could be obtained with FIR filters.

Blood Flow Velocity↗
PubMed2000

Using time-dependent neural networks for EEG classification.

This paper compares two different topologies of neural networks. They are used to classify single trial electroencephalograph (EEG) data from a brain-computer interface (BCI). A short introduction to time series classification is given, and the used classifiers are described. Standard multilayer perceptrons (MLPs) are used as a standard method for classification. They are compared to finite impulse response (FIR) MLPs, which use FIR filters instead of static weights to allow temporal processing inside the classifier. A theoretical comparison of the two architectures is presented. The results of a BCI experiment with three different subjects are given and discussed. These results demonstrate the higher performance of the FIR MLP compared with the standard MLP.

Cerebral Cortex↗
PubMed2002

A floating-point digital receiver for MRI.

A magnetic resonance imaging (MRI) system requires the highest possible signal fidelity and stability for clinical applications. Quadrature analog receivers have problems with channel matching, dc offset and analog-to-digital linearity. Fixed-point digital receivers (DRs) reduce all of these problems. We have demonstrated that a floating-point DR using large (order 124 to 512) FIR low-pass filters also overcomes these problems, automatically provides long word length and has low latency between signals. A preloaded table of finite impuls response (FIR) filter coefficients provides fast switching between one of 129 different one-stage and two-stage multrate FIR low-pass filters with bandwidths between 4 KHz and 125 KHz. This design has been implemented on a dual channel circuit board for a commercial MRI system.

Algorithms↗
PubMed1992

Tonic and phasic electrodermal measures of human aversive conditioning with long duration stimuli.

Two experiments investigated phasic and tonic electrodermal responding to long, variable-duration stimuli in aversive conditioning procedures. Experiment I demonstrated reliable differential conditioning on both phasic (first interval response, FIR) and tonic (change in skin conductance level, delta SCL; spontaneous fluctuations) measures, using 10-40-s slides as conditioned stimuli (CSs) and electric shock as the unconditioned stimulus (UCS). Experiment 2 examined the sensitivity of phasic and tonic measures to UCS aversiveness. Both FIR and delta SCL were greater to a conditioned stimulus paired with shock than one paired with an innocuous reaction-time warning tone. Responding was reversed when the reinforcement contingencies were reversed. It was suggested that, with long duration CSs and an aversive UCS, phasic measures to stimulus onset, such as FIR, may reflect both stimulus significance and threat appraisal, whereas tonic measures reflect primarily arousal or anxiety arising from anticipation of the aversive unconditioned stimulus.

Adult↗
PubMed1996

Analysis of the p wave in the signal-averaged electrocardiogram: normal values and reproducibility.

To apply p wave analysis of the signal-averaged electrocardiogram (SAECG) clinically, the knowledge of normal values and the verification of highly reproducible measurements are essential. In 40 healthy volunteers (ages 23-37 years), an SAECG of the p wave was performed and then repeated after 1 week and 1 month. In addition to Simson analysis (unidirectional and bidirectional filters), the data were filtered with finite impulse response (FIR) and least squares fit (LSQ) filters to obtain a better differentiation between the end of the p wave and QRS onset. All recordings were evaluated by two independent observers, and the following parameters were calculated: the duration of the p wave in the three unfiltered leads; and for the vector magnitude of the three leads x, y, and z: the duration of the p wave and the root mean square voltage of its last 30, 20, and 10 ms. The average p wave duration was significantly different among the various filter techniques: 135 +/- 7 ms (unidirectional); 97 +/- 8 ms (bidirectional); 109 +/- 8.5 ms (FIR); and 126 +/- 10 ms (LSQ) (P = 0.001 for each comparison). There was a good reproducibility of the data analyzed with the Simson method (R = 0.80-0.91). Filtering with the FIR and LSQ leads to a considerably greater variability.

Adult↗
PubMed1999

Boron neutron capture therapy (BNCT): implications of neutron beam and boron compound characteristics.

The potential efficacy of boron neutron capture therapy (BNCT) for malignant glioma is a significant function of epithermal-neutron beam biophysical characteristics as well as boron compound biodistribution characteristics. Monte Carlo analyses were performed to evaluate the relative significance of these factors on theoretical tumor control using a standard model. The existing, well-characterized epithermal-neutron sources at the Brookhaven Medical Research Reactor (BMRR), the Petten High Flux Reactor (HFR), and the Finnish Research Reactor (FiR-1) were compared. Results for a realistic accelerator design by the E. O. Lawrence Berkeley National Laboratory (LBL) are also compared. Also the characteristics of the compound p-Boronophenylaline Fructose (BPA-F) and a hypothetical next-generation compound were used in a comparison of the BMRR and a hypothetical improved reactor. All components of dose induced by an external epithermal-neutron beam fall off quite rapidly with depth in tissue. Delivery of dose to greater depths is limited by the healthy-tissue tolerance and a reduction in the hydrogen-recoil and incident gamma dose allow for longer irradiation and greater dose at a depth. Dose at depth can also be increased with a beam that has higher neutron energy (without too high a recoil dose) and a more forward peaked angular distribution. Of the existing facilities, the FiR-1 beam has the better quality (lower hydrogen-recoil and incident gamma dose) and a penetrating neutron spectrum and was found to deliver a higher value of Tumor Control Probability (TCP) than other existing beams at shallow depth. The greater forwardness and penetration of the HFR the FiR-1 at greater depths. The hypothetical reactor and accelerator beams outperform at both shallow and greater depths. In all cases, the hypothetical compound provides a significant improvement in efficacy but it is shown that the full benefit of improved compound is not realized until the neutron beam is fully optimized.

Biophysics↗