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A formal test of linguistic and genetic coevolution in native Central and South America.

This paper investigates a mechanism of linguistic and genetic coevolution in Native Central and South America. This mechanism proposes that a process of population fissions, expansions into new territories, and isolation of ancestral and descendant groups will produce congruent language and gene trees. To evaluate this population fissions mechanism, we collected published mtDNA sequences for 1,381 individuals from 17 Native Central and South American populations. We then tested the hypothesis that three well-known language classifications also represented the genetic structure of these populations. We rejected the hypothesis for each language classification. Our tests revealed linguistic and genetic correspondence in several shallow branches common to each classification, but no linguistic and genetic correspondence in the deeper branches contained in two of the language classifications. We discuss the possible causes for the lack of congruence between linguistic and genetic structure in the region, and describe alternative mechanisms of linguistic and genetic correspondence and their predictions.

Cluster Analysis↗

Comparison of Schwann cell and sciatic nerve transcriptomes indicates that mouse is a valid model for the human peripheral nervous system.

High-throughput gene expression analyses of murine models of the peripheral nervous system (PNS), and its cellular components, have yielded enormous amounts of expression data of the PNS in various conditions. These data provided clues for future research directions to further decipher this complex organ in relation to acquired and inherited PNS diseases. Various studies addressing the validity of mouse models for human conditions in other tissues and cell types have indicated that in many cases the mouse model only poorly represents the human situation. To determine how well the mouse can serve as model to study the biological processes occurring in the PNS, we compared the gene expression profiles that we generated for mouse and human sciatic nerve and cultured Schwann cells derived thereof. A two-way analysis based on the differentially expressed genes between the sciatic nerve and the cultured Schwann cell, and which takes into account the differential expression between mouse and man, indicates that the human PNS is well represented by that of the mouse in terms of the "biological processes" ontology.

Animals↗

Behavioural and biological determinants of fertility transition in sub-Saharan Africa.

In the transition from high to low fertility, different biological and behavioural proximate determinants play roles of varying importance in mediating the change. In most regions of the world, the practice of contraception has come to play the major role, so much so that there is a close relationship worldwide between the level of practice of contraception and the level of fertility. In sub-Saharan Africa, the prevalence of contraceptive practice is low, and fertility levels are exceptionally high for recorded levels of contraceptive practice, even where levels of contraceptive practice are comparable to other regions. The discrepancies are explained to a very large extent by differences between Africa and other regions in other proximate determinants--notably exposure to the risk of pregnancy, and abstinence after delivery. It would seem that transition in African countries will follow one of two patterns that are different to the pattern of transition observed in all other regions. First, fertility may rise before it declines, due to abandonment of traditional fertility regulation for some time prior to the eventual adoption of contraceptive practice. Second, the prevalence of contraceptive practice may rise for a time before there is an observable decline in fertility, because at the same time that contraception is adopted, traditional regulation of fertility is being abandoned, offsetting any effect on fertility. Kenya is an example of the first pattern, while Botswana, Ghana, and Zimbabwe are probably examples of the second.

Africa↗

Exogenous tau RNA is localized in oocytes: possible evidence for evolutionary conservation of localization mechanisms.

The multistep pathway leading to intracellular RNA localization is known to involve cis-acting signals in targeted mRNAs, which are presumably recognized by specific RNA-binding proteins and interact with a functional cytoskeleton. Tau RNA is localized to the proximal hillock of rat axons, and this movement requires intact microtubules. Because Xenopus oocytes demonstrate a clear polarity involving microtubule-mediated RNA localization, we have studied the distribution of tau RNA injected into oocytes. We find that a fragment from the 3'-untranslated region of tau RNA is localized to the vegetal cortex of stage III/IV oocytes in a distribution indistinguishable from Vg1 RNA, a vegetally localized oocyte mRNA. A fragment from the tau RNA coding region, however, is homogeneously distributed in oocytes. Tau RNA contains a functional binding site for Vg1 RBP, a Xenopus microtubule-associated protein that binds vegetally localized oocyte RNAs with high affinity, and this binding correlates with vegetal localization ability. The present studies demonstrate, for the first time, localization of heterologous RNA in oocytes. Given the role of Vg1 RBP as a mediator of specific RNA-microtubule interactions, these results are strong evidence that Vg1 RBP is involved in the vegetal localization of RNAs in oocytes and raise the intriguing possibility of the existence of proteins with similar function in neurons.

Actins↗

Why people punish defectors. Weak conformist transmission can stabilize costly enforcement of norms in cooperative dilemmas.

In this paper, we present a cultural evolutionary model in which norms for cooperation and punishment are acquired via two cognitive mechanisms: (1) payoff-biased transmission-a tendency to copy the most successful individual; and (2) conformist transmission-a tendency to copy the most frequent behavior in the population. We first show that if a finite number of punishment stages is permitted (e.g. two stages of punishment occur if some individuals punish people who fail to punish non-cooperators), then an arbitrarily small amount of conformist transmission will stabilize cooperative behavior by stabilizing punishment at some n -th stage. We then explain how, once cooperation is stabilized in one group, it may spread through a multi-group population via cultural group selection. Finally, once cooperation is prevalent, we show how prosocial genes favoring cooperation and punishment may invade in the wake of cultural group selection.

Cooperative Behavior↗

Theoretical and empirical aspects of gene-culture coevolution.

Cultural transmission can be roughly defined as the transfer of information between individuals by social learning (see below). Genes used to be, and for most species still are, the only means available for the accurate transfer of information across generations. In species where cultural transmission has developed, notably the human, interactions can occur between the two inheritance systems. Gene-culture coevolution refers to the evolutionary phenomena that arise from these interactions. As we shall see, these interactions can take various forms.

Adult↗

Evolution of Xenopus endodermal cells cultured on different extracellular matrix components. Identification of primordial germ cells.

Plated on untreated glass substrate, Xenopus endodermal cells are unable to undergo any morphological or cytological differentiation. Culture on artificial substrates prepared with components of the extracellular matrix, the endodermal cell behavior is entirely different. To identify the primordial germ cells (PGC), we use three coated substrate types: fibronectin, collagen and collagen plus fibronectin. These substrates allow us to distinguish three cell types shortly after explantation. Using fibronectin-coated substrate, most of the cells, after attachment and spreading, form cellular islets which tend to fuse, leading to the formation of a polyhedric cell monolayer. Such fusing is notably reduced on composite substrate (Coll + FN) or on collagen substrate only. Thus it is possible to distinguish the special morphological features exhibited by the rest of the cells. Some of them retain the aspect of endodermal gastrula cells in vitro. Others, elongated or spindle-shaped, possess the characteristics of PGC. Nevertheless, the identification and sampling of the presumed germ cells is easier on COLL + FN-coated substrate. The morphological and cytological characteristics of the elongated cells are similar to those observed during PGC migration through the endodermal mass. According to these results, there is little doubt that these elongated cells are primordial germ cells.

Animals↗

Anaerobic biosynthesis of unsaturated fatty acids in the cyanobacterium, Oscillatoria limnetica.

The mechanism for synthesis of monounsaturated fatty acids under aerobic and anaerobic conditions was studied in the facultative anaerobic cyanobacterium, Oscillatoria limnetica. The hexadecenoic acid (C16:1) of aerobically grown O. limnetica was shown to contain both the delta 7 (79%) and delta 9 (21%) isomers, while the octadecenoic (C18:1) acid was entirely the delta 9 acid. Incorporation of [2-14C] acetate into the fatty acids under aerobic conditions resulted in synthesis of the delta 7 and delta 9 C16:1 and the delta 9 C18:1. Synthesis of unsaturated fatty acids in the presence of DCMU required sulfide. Anaerobic incubations in the presence of DCMU and sulfide (less than 0.003% atmospheric oxygen) resulted in a two-fold increase in monounsaturated fatty acids of both delta 7 and delta 9 C16:1 and delta 9 and delta 11 C18:1. The synthesis of these is characteristic of a bacterial-type, anaerobic pathway.

Acetates↗

[Preindustrial man in earth's ecosystems].

Preindustrial man influenced and changed the earth's ecosystems decisively. The disappearance of large animals from all continents (Eurasia, e.g., mammoth; America, e.g., the giant sloths and the giant armadillo) after the Pleistocene was most probably due to a large extent to the early hunters and collectors. Corn-growing and breeding of domestic animals led to the disappearance of their wild forms (e.g., the wild form of today's old world camel is unknown) and the cultivation of huge monocultures. The increasing need for wood resulted in the disappearance of forests almost all over Europe. Specific needs, such as pig-raising or bee-keeping, supported the formation of particular landscapes, e.g., sparsely wooded forests and extensive heathlands. All these factors resulted in extreme soil erosion and the disappearance of nutritionally important minerals from the soil, which was thus severely depleted.

Agriculture↗

Physiological effect of the alterations of plasmids derived from Neisseria gonorrhoeae.

Transfer of plasmid DNA from penicillinase-producing Neisseria gonorrhoeae to Escherichia coli produced relatively small colonies that became pigmented in the presence of the dye, congo red. Mutations to large, non-pigmented colonies were frequent, and were the result of a variety of alterations in these plasmids. Miniplasmid formation was the major alteration that led to non-pigmented colonies. However, deletions in any of three putative replication regions resulted in non-pigmented colonies. These altered plasmids mediated significantly less beta-lactamase production than that of the parent plasmid. A new origin of replication was discovered and mapped within the miniplasmid. This origin was responsible for: 1) high plasmid copy number, 2) stability of inheritance, and 3) the majority of beta-lactamase produced in culture. The evolution of gonococcal plasmids may be followed in E. coli, since less defective plasmids produce nonpigmented colonies on congo red agar medium.

Congo Red↗

Prolonged treatment of chronic Pseudomonas aeruginosa osteomyelitis with a combination of two effective antibiotics.

Emergence of Pseudomonas aeruginosa resistant to antibiotic monotherapy is one of the causes of therapeutic failure in chronic P. aeruginosa osteomyelitis. We report 15 cases of chronic (> 3 months of evolution) biopsy culture proven P. aeruginosa osteomyelitis included in an open prospective study evaluating the efficacy of prolonged treatment (> 4 months) with two effective antibiotics in combination. Mean post-treatment follow-up was 38 months. A regimen of cefsulodin in combination with oral ofloxacin was used for six patients, cefsulodin-pefloxacin for three patients, cefsulodin-ciprofloxacin for one patient, piperacillin-pefloxacin for one patient, cefsulodin-fosfomycin for one patient, imipenem-ciprofloxacin for two patients and amoxicillin-ciprofloxacin-fosfomycin for one patient as home therapy. The clinical cure rate of 73% and bacteriological cure rate of 93% are far superior to those previously described in the literature. We did not observe adverse drug reactions. We think that a prolonged use of two effective antibiotics in combination is a safe and improved therapeutic schedule for chronic P. aeruginosa osteomyelitis.

Adolescent↗

Prehistoric human colonization of India.

Human colonization in India encompasses a span of at least half-a-million years and is divided into two broad periods, namely the prehistoric (before the emergence of writing) and the historic (after writing). The prehistoric period is divided into stone, bronze and iron ages. The stone age is further divided into palaeolithic, mesolithic and neolithic periods. As the name suggests, the technology in these periods was primarily based on stone. Economically, the palaeolithic and mesolithic periods represented a nomadic, hunting-gathering way of life, while the neolithic period represented a settled, food-producing way of life. Subsequently copper was introduced as a new material and this period was designated as the chalcolithic period. The invention of agriculture, which took place about 8000 years ago, brought about dramatic changes in the economy, technology and demography of human societies. Human habitat in the hunting-gathering stage was essentially on hilly, rocky and forested regions, which had ample wild plant and animal food resources. The introduction of agriculture saw it shifting to the alluvial plains which had fertile soil and perennial availability of water. Hills and forests, which had so far been areas of attraction, now turned into areas of isolation. Agriculture led to the emergence of villages and towns and brought with it the division of society into occupational groups. The first urbanization took place during the bronze age in the arid and semi-arid region of northwest India in the valleys of the Indus and the Saraswati rivers, the latter represented by the now dry Ghaggar-Hakra bed. This urbanization is known as the Indus or Harappan civilization which flourished during 3500-1500 B.C. The rest of India during this period was inhabited by neolithic and chalcolithic farmers and mesolithic hunter-gatherers. With the introduction of iron technology about 3000 years ago, the focus of development shifted eastward into the Indo-Gangetic divide and the Ganga valley. The location of the Mahabharata epic, which is set in the beginning of the first millennium B.C., is the Indo-Gangetic divide and the upper Ganga-Yamuna doab (land between two rivers). Iron technology enabled pioneering farmers to clear the dense and tangled forests of the middle and lower Ganga plains. The focus of development now shifted further eastward to eastern Uttar Pradesh and western Bihar which witnessed the events of the Ramayana epic and rise of the first political entities known as Mahajanapadas as also of Buddhism and Jainism. The second phase of urbanization of India, marked by trade, coinage, script and birth of the first Indian empire, namely Magadha, with its capital at Pataliputra (modern Patna) also took place in this region in the sixth century B.C. The imposition by Brahmin priests of the concepts of racial and ritual purity, pollution, restrictions on sharing of food, endogamy, anuloma (male of upper caste eligible to marry a female of lower caste) and pratiloma (female of upper caste ineligible to marry a male of lower caste) forms of marriage, karma (reaping the fruits of the actions of previous life in the present life), rebirth, varnashrama dharma (four stages of the expected hundred-year life span) and the sixteen sanskaras (ceremonies) on traditional occupational groups led to the birth of the caste system - a unique Indian phenomenon. As a consequence of the expansion of agriculture and loss of forests and wildlife, stone age hunter-gatherers were forced to assimilate themselves into larger agriculture-based rural and urban societies. However, some of them resisted this new economic mode. To this day they have persisted with their atavistic lifestyle, but have had to supplement their resources by producing craft items or providing entertainment to the rural population.

Cultural Evolution↗

Factor structure of the Eating Attitudes Test (EAT) in a Turkish university sample.

OBJECTIVE: The primary purpose of this study was to compare the factor structure of the Eating Attitudes Test (EAT) in a sample of Turkish university students with both that of the original Canadian study and that of a Turkish study conducted ten years earlier. METHOD: The EAT 40 was administered to a sample of 270 female undergraduates at the Bogazici and Marmara universities in Istanbul, Turkey. RESULTS: The factor structure produced more closely resembled the original than did that of the study conducted ten years ago. Of particular note was the presence of a bulimia factor which had not emerged in the previous Turkish study, together with a new factor labelled "Ambivalence about Eating". DISCUSSION: Comparison of the two Turkish studies highlights the emergence of a bulimia factor not present ten years ago. This reflects clinical experience. Moreover the new Ambivalence about Eating factor is discussed in terms of the transitional nature of Turkish society and the role of a culture clash between traditional and westernized attitudes towards food. It is therefore predicted that the prevalence of eating disorders in Turkish culture will dramatically increase in the foreseeable future.

Adult↗

Fermentation of glycolate by a pure culture of a strictly anaerobic gram-positive bacterium belonging to the family Lachnospiraceae.

The component bacteria of a three-membered mixed culture able to ferment glycolate to acetate, propionate and CO(2) were isolated in pure culture. All three strains were strict anaerobes that, on the basis of comparative 16S rRNA gene sequence analysis, belonged to the order Clostridiales in the phylum Firmicutes (low G+C gram-positive bacteria). Two of the strains were not involved in glycolate metabolism. The third, the glycolate-fermenting strain 19gly4 (DSM 11261), was related to members of the family Lachnospiraceae. The cells of strain 19gly4 were oval- to lemon-shaped, 0.85 microm long and 0.65 microm in diameter, occurring singly, in pairs, or in chains of up to 30 cells. Strain 19gly4 fermented glycolate or fumarate to acetate, succinate, and CO(2). Hydrogen was not formed, and strain 19gly4 was able to grow on glycolate in pure culture without any syntrophic hydrogen transfer and without the use of an external electron acceptor. There was no evidence for homoacetogenic metabolism. This bacterium therefore differs in metabolism from previously reported glycolate-utilising anaerobes.

Anaerobiosis↗

Adaptative value of a PKC-PKI55 feedback loop of inhibition that prevents the kinase's deregulation.

A 168-bp amplification product was obtained in RT-PCR experiments using a degenerate oligonucleotide designed on a five-amino acid sequence of IN, a 7-kDa protein, previously characterized as a PKC inhibitor. It was included in the coding ORF of the 1530-bp-long IMAGE clone ID 38900 (accession numbers R51337 and R51448) that produces a translation product of 6.5 kDa. The translation of the ORF conceptual reading frame allowed the preparation of the synthetic protein PKI55, which was found to inhibit and degrade both untreated nPKC d isozymes and activated cPKC isozymes. The PKI55 gene is localized in chromosome 2q35. The Repeat Maskers output showed a 533-bp-long LTR32/ERVL segment that included the PKI55 coding sequence and a complete regulatory region. The coding sequence and the structure of PKI55 were detected in a brain cDNA of Macaca fascicularis (diverged from human lineages about 25 Myr ago). Three other human genes with over 60% identities with PKI55 were identified in three different loci (i.e., chromosomes 10, 15, and 20.) Synthesis of PKI55 was stimulated by PKC activation. A feedback loop of inhibition is established. When the PKCs are overactivated, PKI55 induces degradation of the enzyme and prevents the isozyme overexpression implicated in a number of important diseases including cancer, diabetes, and disorders of the immune system. The presence of the PKI55 sequence in Macaca fascicularis as well as in human chromosomes 10, 15, and 20 indicates a selective advantage for the PKI55 sequence and the adaptive value of the feedback mechanism.

Animals↗