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At least 433 records · Page 24Linked to original sources
PubMed2002

Use of the ion exchange method for the determination of stability constants of trivalent metal complexes with humic and fulvic acids--part I: Eu3+ and Am3+ complexes in weakly acidic conditions.

The conditional stability constants for tracer concentrations of Eu(III) and Am(III) with a red earth humic acid (REHA), a red earth fulvic acid (REFA) and a fulvic acid from weathered coal (WFA) were determined at pH 5.2-6.4 (such values are similar to those in non-calcareous soils) in the presence of HAc/NaAc or NaNO3 by using the cation exchange method. It was found that 1:1 complexes were predominately formed in weakly acidic conditions. The total exchangeable proton capacities and the degrees of dissociation of these humic substances were determined by using a potentiometric titration method. The key parameters necessary for the experimental determination of the conditional stability constants of metal ions with humic substances in weakly acidic conditions by using the cation exchange method were discussed. The conditional stability constants of 1:1 complexes obtained in this paper were compared with the literature data of Am(III) determined by using the ion exchange method and the solvent extraction method and with the stability constants of 1:1 complexes of UO2(2+) and Th4+ with the same soil humic substances. These results indicate the great stability of bivalent UO2(2+), trivalent Eu3+, Am3+ and tetravalent Th4+ complexes with humic and fulvic acids in weakly acidic conditions.

Journal Article↗
PubMed1980

The case of General Grigorenko: a psychiatric reexamination of a Soviet dissident.

Pyotr Grigorievich Grigorenko was the perfect realization of the Bolshevik dream. Emerging from the humblest soil of Czarist Russia, he rose to the highest precincts of Soviet power. An ardent patriot, a committed communist and effective leader, he became a Major General in the Red Army, exercised a deep and seminal influence on Soviet military theory, and was showered with medals, honors and promotions through five loyal decades of his Soviet life. In the early nineteen-sixties, at the height of his career, he turned dissident. Arrested, he was psychiatrically examined, declared mentally ill, and committed to prison hospitals for the criminally insane. Two years ago, after reaching the West, he asked for a second opinion on his psychiatric condition. This is a report on the examinations and the findings.

Communism↗
PubMed1964

MICROBIAL DEGRADATION OF CORRINOIDS. I. VITAMIN B12.

Scott, W. M. (Wayne State University, Detroit, Mich.), R. C. Burgus, J. B. Hufham, and J. J. Pfiffner. Microbial degradation of corrinoids. I. Vitamin B(12). J. Bacteriol. 88:581-585. 1964.-Microorganisms isolated from a variety of soil, sewage, and mud samples, and stock cultures, were examined for the ability to degrade vitamin B(12). More than 200 isolates which attack the vitamin were examined, and they all demonstrated reversible fading of the red vitamin. The color was restored by aeration. Very few microorganisms were able to degrade the vitamin to permanently colorless products, although many were able to degrade it partially, to produce new pigments. Some of these pigments appeared similar, if not identical, although they were produced by different bacteria. Radiotracer and electrophoretic mobility data are presented to show that the transformation products are derived from the vitamin. All the degradative microorganisms isolated were bacteria, and the most active was Pseudomonas rubescens.

Bacillus↗
PubMed1989

Isolation of microorganisms capable of degrading isoquinoline under aerobic conditions.

Isoquinoline-degrading microbial cultures were isolated from oil- and creosote-contaminated soils. The establishment of initial enrichment cultures required the use of emulsified isoquinoline. Once growth on isoquinoline was established, isoquinoline emulsification was no longer required for utilization of isoquinoline as the sole source of carbon and nitrogen by these cultures. An isoquinoline-degrading Acinetobacter strain was isolated from one of the enrichment cultures. The degradation of isoquinoline was accompanied by the accumulation of a red cell-associated pigment and of 1-hydroxyisoquinoline, which was further degraded to unknown intermediary ring-cleavage products and carbon dioxide.

Acinetobacter↗
PubMed1993

Effect of liming on plant accumulation of cadmium under upland or flooded conditions.

Liming a Cd-amended red earth (typical hapludalf) decreased plant shoot Cd content both in upland and in flooded conditions. The effect was due to the restriction of the total uptake of Cd from soil and the Cd transfer from roots to shoots following liming. Pot soil samples were sequentially extracted with 1 M ammonium acetate, 0.125 M Cu(II) acetate, and 1 m HNO3 to fractionate Cd into exchangeable, complexed, and acid-soluble forms. Results showed that soil flooding decreased exchangeable Cd and increased Cd in the complexed fraction. Liming also transferred Cd from exchangeable fraction to other lower available fractions depending on water regimes. With upland conditions, the Cd was transferred to the residual fraction, and to a lesser extent to the acid-soluble fraction, whereas in flooded soil the lost exchangeable Cd was recovered mainly in complexed fraction where the Cd was potentially more available for plants compared with that in residual and in acid-soluble fractions. Therefore, soil liming for controlling plant Cd uptake would be more favourable in upland rather than flooded conditions.

Journal Article↗
PubMedDate not supplied

Encystation in Acanthamoeba castellanii: development of biocide resistance.

Since the early 1960s, axenic culture and the development of procedures for the induction of encystation have made Acanthamoeba spp. superb experimental systems for studies of cell biology and differentiation. More recently, since their roles as human pathogens causing keratitis and encephalitis have become widely recognized, it has become urgent to understand the parameters that determine differentiation, as cysts are much more resistant to biocides than are the trophozoites. Viability of trophozoites of the soil amoeba Acanthamoeba castellanii (Neff), is conveniently measured by its ability to form plaques on a lawn of Escherichia coli. Use of confocal laser scanning microscopy with Calcofluor white, Congo Red or the anionic oxonol dye, DiBAC4(3) or flow cytometry with propidium iodide diacetate and fluorescein or oxonol provides more rapid assessment. For cysts, the plaque method is still the best, because dye exclusion does not necessarily indicate viability and therefore the plate count method has been used to study the sequence of development of biocide resistance during the differentiation process. After two hours, resistance to HCl was apparent. Polyhexamethylene biguanide, benzalkonium chloride, propamidine isethionate, pentamidine isethionate, dibromopropamine isethionate, and H2O2 and moist heat, all lost effectiveness at between 14 and 24 h after trophozoites were inoculated into encystation media. Chlorhexidine diacetate resistance was observed at between 24 and 36 h. The molecular biology and biochemistry of the modifications that underlie these changes are now being investigated.

Acanthamoeba↗
PubMed2004

Exploring field vegetation reflectance as an indicator of soil contamination in river floodplains.

This study investigated the relation between vegetation reflectance and elevated concentrations of the metals Ni, Cd, Cu, Zn and Pb in river floodplain soils. High-resolution vegetation reflectance spectra in the visible to near-infrared (400-1350 nm) were obtained using a field radiometer. The relations were evaluated using simple linear regression in combination with two spectral vegetation indices: the Difference Vegetation Index (DVI) and the Red-Edge Position (REP). In addition, a multivariate regression approach using partial least squares (PLS) regression was adopted. The three methods achieved comparable results. The best R(2) values for the relation between metals concentrations and vegetation reflectance were obtained for grass vegetation and ranged from 0.50 to 0.73. Herbaceous species displayed a larger deviation from the established relationships, resulting in lower R(2) values and larger cross-validation errors. The results corroborate the potential of hyperspectral remote sensing to contribute to the survey of elevated metal concentrations in floodplain soils under grassland using the spectral response of the vegetation as an indicator. Additional constraints will, however, have to be taken into account, as results are resolution- and location-dependent.

Environmental Monitoring↗
PubMed2003

PCR-targeted Streptomyces gene replacement identifies a protein domain needed for biosynthesis of the sesquiterpene soil odor geosmin.

Streptomycetes are high G+C Gram-positive, antibiotic-producing, mycelial soil bacteria. The 8.7-Mb Streptomyces coelicolor genome was previously sequenced by using an ordered library of Supercos-1 clones. Here, we describe an efficient procedure for creating precise gene replacements in the cosmid clones by using PCR targeting and lambda-Red-mediated recombination. The cloned Streptomyces genes are replaced with a cassette containing a selectable antibiotic resistance and oriT(RK2) for efficient transfer to Streptomyces by RP4-mediated intergeneric conjugation. Supercos-1 does not replicate in Streptomyces, but the clones readily undergo double-crossover recombination, thus creating gene replacements. The antibiotic resistance cassettes are flanked by yeast FLP recombinase target sequences for removal of the antibiotic resistance and oriT(RK2) to generate unmarked, nonpolar mutations. The technique has been used successfully by >20 researchers to mutate around 100 Streptomyces genes. As an example, we describe its application to the discovery of a gene involved in the production of geosmin, the ubiquitous odor of soil. The gene, Sco6073 (cyc2), codes for a protein with two sesquiterpene synthase domains, only one of which is required for geosmin biosynthesis, probably via a germacra-1 (10) E,5E-dien-11-ol intermediate generated by the sesquiterpene synthase from farnesyl pyrophosphate.

Amino Acid Sequence↗
PubMed2002

Characterization and description of Anaeromyxobacter dehalogenans gen. nov., sp. nov., an aryl-halorespiring facultative anaerobic myxobacterium.

Five strains were isolated which form a physiologically and phylogenetically coherent group of chlororespiring microorganisms and represent the first taxon in the Myxobacteria capable of anaerobic growth. The strains were enriched and isolated from various soils and sediments based on their ability to grow using acetate as an electron donor and 2-chlorophenol (2-CPh) as an electron acceptor. They are slender gram-negative rods with a bright red pigmentation that exhibit gliding motility and form spore-like structures. These unique chlororespiring myxobacteria also grow with 2,6-dichlorophenol, 2,5-dichlorophenol, 2-bromophenol, nitrate, fumarate, and oxygen as terminal electron acceptors, with optimal growth occurring at low concentrations (<1 mM) of electron acceptor. 2-CPh is reduced by all strains as an electron acceptor in preference to nitrate, which is reduced to ammonium. Acetate, H(2), succinate, pyruvate, formate, and lactate were used as electron donors. None of the strains grew by fermentation. The 16S ribosomal DNA (rDNA) sequences of the five strains form a coherent cluster deeply branching within the family Myxococcaceae within the class Myxobacteria and are mostly closely associated with the Myxococcus subgroup. With the exception of anaerobic growth and lack of a characteristic fruiting body, these strains closely resemble previously characterized myxobacteria and therefore should be considered part of the Myxococcus subgroup. The anaerobic growth and 9.0% difference in 16S rDNA sequence from those of other myxobacterial genera are sufficient to place these strains in a new genus and species designated Anaeromyxobacter dehalogenans. The type strain is 2CP-1 (ATCC BAA-258).

Acetates↗
PubMed2004

Development of a plate technique for screening of polysaccharide-degrading microorganisms by using a mixture of insoluble chromogenic substrates.

A plate assay based on the visible solubilization of small substrate particles and the formation of haloes on Petri dishes, containing a mixture of different dye-labelled polysaccharides as substrates, provides a specific, reliable and rapid simultaneous detection of corresponding polysaccharide-degrading microorganisms. It has potential for increasing the efficacy of screening of microorganisms, utilizing different polysaccharides, in large numbers of natural samples. Diversely colored insoluble forms of amylose, xylan and hydroxyethyl-cellulose (HE-cellulose) were prepared as chromogenic substrates by using the cross-linking reagent 1,4-butanediol diglycidyl ether and the dyes Brilliant Red 3B-A, Cibacron Blue 3GA and Reactive Orange 14. Using the method, the bacteria with amylase or xylanase or cellulase or a combination of these activities were screened from soil and sludge samples, selected and identified according to 16S rDNA sequencing.

Amylose↗
PubMed2004

Disseminated cutaneous infection with Mycobacterium chelonae in a patient with steroid-dependent rheumatoid arthritis.

Mycobacterium chelonae is a rapidly growing atypical mycobacterium that is a normal commensal of water and soil. We report a case of a 61-year-old man with seronegative rheumatoid arthritis and fibrosing alveolitis on long-term prednisolone who presented with a number of tender, red, subcutaneous nodules on his upper arms and a pustule on his left cheek. Histopathologic examination revealed dense neutrophilic collections within the deep dermis and subcutaneous fat with abscess formation. Long filamentous organisms were seen within these collections and were subsequently identified by special stains and PCR as Mycobacterium chelonae. Treatment was not possible as the patient developed bacteria bronchopneumonia before identification of the organism and he subsequently died. Post-mortem revealed no extra-cutaneous evidence of mycobacterium infection.

Arthritis, Rheumatoid↗
PubMed1981

Studies of an outbreak of Corynebacterium equi pneumonia in foals.

Five out of 6 foals between 2 and 4 months old, on a ranch in northern California, developed pneumonia within a 3 week period in June and July 1978. Corynebacterium equi was recovered from each of the 5 foals by transtracheal aspiration. Clinical signs were variable but included increased respiratory rate, fever, cough, nasal discharge, harsh airway sounds over middle sized airways and wheezing over small airways. Cyanosis was present in the most severely affected foal. Radiographic findings included diffusely increased interstitial and peribronchial densities, areas of consolidation and, in 3 cases, dense focal areas indicating abscessation. Foals were treated with several different antimicrobial agents. Most were treated with penicillin and gentamicin. Four of the 5 affected foals recovered within 2 to 3 weeks but the first foal to be affected died 2 days after first receiving veterinary attention. At postmortem examination, pulmonary changes considered typical of C equi pneumonia were found, including wet, heavy dark red lungs which failed to collapse and numerous 1 to 7 cm thin-walled abscesses throughout the parenchyma, containing inspissated exudate. C equi was cultured from the exudate. Samples of soil and dust from 9 of 20 areas inhabited by infected foals yielded C equi of the same serological group as found in the foals. Eight paddocks in which foals had not been kept were negative for C equi. The organism was recovered from cobwebs in the stalls occupied by infected foals. Aerosol infection via dust was considered to be the route of infection. Pharyngeal, vaginal and faecal cultures from the dams of 3 affected foals were negative for C equi. Early diagnosis by transtracheal aspiration and appropriate therapy are considered to be extremely important in the successful treatment of C equi pneumonia. Preventive therapy should include control of environmental dust.

Animals↗
PubMed2006

How do soil nutrients affect within-plant patterns of herbivory in seedlings of Eucalyptus nitens?

This study assessed how the palatability of leaves of different age classes (young, intermediate and older) of Eucalyptus nitens seedlings varied with plant nutrient status, based on captive feeding trials with two mammalian herbivores, red-bellied pademelons (Thylogale billardierii), and common brushtail possums (Trichosurus vulpecula). Seedlings were grown under three nutrient treatments (low, medium and high), and we determined how palatability was related to chemical and physical characteristics of the leaves. Pademelons ate more older leaves than young and intermediate leaves for all treatments. This pattern was best explained by sideroxylonals (formylated phloroglucinol compounds known to deter herbivory by other marsupials), and/or essential oil compounds that were present in lower concentrations in older leaves. In the low-nutrient treatment, possums also ate more of the older leaves. However, in the medium- and high-nutrient treatments, possums ate more intermediate leaves than older leaves and showed a behavioural preference for young leaves (consuming younger leaves first) over intermediate and older leaves, in spite of high levels of sideroxylonals and essential oils. The young leaves did, however, have the highest nitrogen concentration of all the leaf age classes. Thus, either sideroxylonals and essential oils provided little or no deterrent to possums, or the deterrent was outweighed by other factors such as high nitrogen. This study indicates that mammalian herbivores show different levels of relative use and damage to leaf age classes at varying levels of plant nutrient status and, therefore, their impact on plant fitness may vary with environment.

Animals↗
PubMedDate not supplied

Characterization of a temperate actinophage, MPphiWR-1, capable of infecting Micromonospora purpurea ATCC 15835.

A temperate actinophage was isolated from soil using the gentamicin-producing microorganism, Micromonospora purpurea ATCC 15835 as host. The characterization of the phage represents the initial step in its development as a cloning vector. The phage isolated, MPphiWR-1, formed red- to purple-pigmented turbid plaques. Cells isolated from these plaques were resistant to superinfection with lytic mutants of MPphiWR-1. Southern blots of genomic DNA from a resistant culture showed that MPphiWR-1 integrated into the host genome. The phage was UV- or Mitomycin C-inducible. The integration, resistance to superinfection and inducibility indicated a lysogenic relationship with the host. Using MPphiE-RCPM, a lytic derivative, the phage host range was demonstrated to include members of three genera: one species each of Ampullariella and Catellatospora, and 12 species of Micromonospora. The phage belonged to Ackerman's B1 morphotype having an isometric head and a flexible noncontractile tail. The density of the phage was 1.525 g/cc. Restriction site mapping demonstrated that the phage DNA was 57.9 kb long and had cohesive ends. Using EDTA enrichment, viable mutants with deletions of at least 3.5 kb were isolated and mapped. Phage adsorption, sensitivities and plating efficiency were investigated. Non-liposome PEG-mediated transfection was demonstrated.

Adsorption↗
PubMed2004

Foliar and soil deposition of pesticide sprays in peanuts and their washoff and runoff under simulated worst-case rainfall conditions.

There are few studies that relate the timing and amounts of pesticide washoff from plant foliage during rainfall to runoff losses at the edge of the field. We hypothesized that foliar deposits, if washed onto the soil slowly during rainfall, may then undergo less leaching during the period of infiltration that occurs prior to soil saturation and runoff, thus exhibiting larger runoff losses than pesticides on/in the soil at the beginning of rain. We measured the runoff of ethalfluralin, metolachlor, chlorothalonil, and rhodamine WT dye using simulated rainfall on 450 m2 mesoplots planted in peanut. Ethalfluralin was applied preplant incorporated, and metolachlor was applied preemergence on bare soil. Chlorothalonil and rhodamine WT were applied to the peanut canopy at maturity. Rainfall was simulated 24 h after each chemical application (in May and July, 1998, and May and August, 1999) using raindrop sprinklers, applying 5.5 +/- 0.5 cm over a 2 h period to create reasonable worst-case conditions; between 3 and 9 mm of runoff was generated. Volume-weighted average concentrations of chemicals in runoff were 7, 104, 163, and 179 ug L(-1) for ethalfluralin, metolachlor, chlorothalonil, and rhodamine WT, respectively. The total amounts of chemicals lost in the runoff events were 0.04 +/- 0.01, 0.2 +/- 0.1, 0.6 +/- 0.5, and 0.2 +/- 0.1, as percents of amounts applied, respectively. Rhodamine WT formed a vivid red solution on wetting and provided visual clues to the dynamics of chemical washoff/runoff. The washoff from rain-exposed peanut foliage appeared to be complete within a few minutes of the beginning of rainfall, and disappearance of dye from rain-exposed soil surface occurred within the first 10 min of rainfall. However, dye was present in runoff water at near-constant concentrations throughout the 2 h runoff event, indicating that near-constant amounts of chemical remained in the soil extraction zone. These results confirm earlier studies showing that soil incorporation at application significantly reduces runoff losses and that a majority of foliar residues can be washable if rainfall occurs within a few days after application. Runoff losses of foliar-applied pesticides were small relative to washoff amounts but were sensitive to runoff timing relative to washoff.

Arachis↗
PubMedDate not supplied

[On the ecology of marine chromatiaceae and chlorobiaceae (author's transl)].

Number and genera (types) of phototrophic red and green sulfur bacteria have been determined in the upper layer of eleven marine sediment samples from the euphotic zone in the Mediterranean Sea. Origin and nature of the sediment samples are given as well as their pH, total nitrogen and sulfide content. The results show that the sediments studied did not provide good growth conditions for Chromatiaceae (Chromatium, Thiocystis, Thiocapsa) and Chlorobiaceae (Prosthecochloris). The total number of these bacteria varied in agreement with the total nitrogen content (organic matter) of the samples; the organic matter content is, therefore, of primary importance for the occurrence of the red and green sulfur bacteria in the samples.

Chromatiaceae↗
PubMed2001

[Development of a cultivation technology and selection of leaf vegetable cultures for space greenhouse].

We plan to perform space experiments on development of a technology for cultivation of leaf vegetables that might be a component of future life support systems for space crews. For this purpose, we are going to fly research greenhouses with the crop area from 0.03 up to 0.1 m2 inside the universal docking module of the ISS Russian segment. To prepare for future space experiments, ground investigations were made in order to compare crop capacity of various artificial soils used to grow leaf vegetables in greenhouse Svet. Useful life of root module Svet can be extended with a new technology based on resupply of fibrous substrate with nutrients. The most effective volume of soil per a plant was determined which sustains high productivity of leaf vegetables in Svet. To select leaf vegetables for in-space cultivation, we conducted investigations of productivity, morphometric and biochemical characteristics, and palatability of 18 cultures including alternative greens highly popular in Japan and China which have been earlier tested neither in laboratory nor in space within the closed eco-system projects. We would prioritize mizuna, pak choi, tatsoi, rapina or broccoli raab, and red giant mustard as objects for in-space investigations.

Agrochemicals↗
PubMed2004

Phenotypic variation of Pseudomonas brassicacearum as a plant root-colonization strategy.

Pseudomonas brassicacearum was isolated as a major root-colonizing population from Arabidopsis thaliana. The strain NFM421 of P. brassicacearum undergoes phenotypic variation during A. thaliana and Brassica napus root colonization in vitro as well as in soil, resulting in different colony appearance on agar surfaces. Bacteria forming translucent colonies (phase II cells) essentially were localized at the surface of young roots and root tips, whereas wild-type cells (phase I cells) were localized at the basal part of roots. The ability of phase II cells to spread and colonize new sites on root surface correlates with over-production of flagellin as evidenced by sodium dodecyl sulfate-polyacrylamide gel electrophoresis analysis of surface proteins and microsequencing. Moreover, phase II cells showed a higher ability to swim and to swarm on semisolid agar medium. Phase I and phase II cells of P. brassicacearum NFM421 were tagged genetically with green fluorescent protein and red fluorescent protein. Confocal scanning laser microscopy was used to localize phase II cells on secondary roots and root tips of A. thaliana, whereas phase I cells essentially were localized at the basal part of roots. These experiments were conducted in vitro and in soil. Phenotypic variation on plant roots is likely to be a colonization strategy that may explain the high colonization power of P. brassicacearum.

Arabidopsis↗