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PubMed2006

Microstructure and self-assembly of inhomogeneous rigid rodlike chains between two neutral surfaces: A hybrid density functional approach.

We use a hybrid density functional approach to investigate the microstructure and self-assembly of inhomogeneous rigid rodlike chains between two neutral surfaces, i.e., two hard walls. In the calculation, the rodlike molecule is modeled as a rigid rod linearly connected by the tangent sphere beads. The hybrid method combines a single-chain Monte Carlo (MC) simulation for the ideal-gas part of Helmholtz energy and a DFT approach for the excess Helmholtz energy. The DFT approach includes a modified fundamental measure theory for the excluded-volume effect, the first order thermodynamics perturbation theory for chain connectivity, and the mean field approximation for the van der Waals attraction. We investigate the effect of the chain length (i.e., aspect ratio) of the rodlike molecule and the separation between two surfaces on the microstructure and self-assembly of inhomogeneous rigid rodlike chains. For the athermal systems, the rodlike chain fluids present a smaller partitioning coefficient compared to the flexible chain fluids. For the thermal systems, lamellar thin films formed by the rigid rodlike molecules perpendicular to the neutral surface are observed. The effects of the head-head interaction and the separation on the self-assembly of the rodlike chain fluids in the slit are investigated.

Journal Article↗
PubMed2004

Maternal rigidity in infancy and level of intelligence at school age in children born preterm.

Forty-four children who had been born preterm and their mothers participated in the follow-up study. At 3 and 14 months (corrected age) cognitive development was assessed using the BOS 2-30, the Dutch version of the Bayley Scales of Infant Development. The BOS yields measures of mental and motor development. At 7.5 years, intelligence was measured using the WISC-RN, the Dutch version of the WISC-R. A composite measure of maternal rigidity, tapping rigidity as a personality trait and rigid attitudes to child-rearing was used. The results of a multiple regression analysis indicated that maternal rigidity, measured in the first year of the child's life, was not associated with mental performance at 3 or 14 months. At 7.5. years, however, it was strongly associated with cognitive development, contributing uniquely to performance IQ.

Adult↗
PubMed2000

Absence of bacterial colonization of the airways after therapeutic rigid bronchoscopy without stenting.

Following airway stenting, bacterial colonization of the airways with potentially pathogenic micro-organisms occurs within 4 weeks after treatment in the majority of patients. The objective of this study was to prospectively investigate whether nonstenting therapeutic rigid bronchoscopy (using laser, cryotherapy, mechanical dilatation or debridement) is followed by airway colonization or infection. Protected specimen brush sampling of the central airways and quantitative culture were performed immediately prior to, and 4 weeks after nonstenting therapeutic rigid bronchoscopy in 20 consecutive patients with central airway lesions. Prior to therapeutic bronchoscopy, airway colonization/infection was present in nine of 20 (45%) patients. In these nine patients, 10 different potential pathogens were identified: Streptococcus pneumoniae (four cases), Pseudomonas aeruginosa (three), Haemophilus influenzae (two), and Serratia marcescens (one). Eight of these nine patients had a history of postobstructive infections, of which three were currently being treated with antibiotics. Four weeks following therapeutic bronchoscopy, airway colonization/infection was present in five of 20 (25%) patients, each of whom had airway colonization/infection prior to bronchoscopy. In three of these five patients, the same organisms were found 4 weeks after bronchoscopy as at baseline bronchoscopy. In two of five patients new organisms were identified: one case of Streptococcus viridans and one case of Haemophilus parainfluenzae, both considered to be nonpathogens. In four of nine patients with airway colonization/infection prior to bronchoscopy, the airways were clear of micro-organisms after the procedure. The authors conclude that: 1) nonstenting therapeutic rigid bronchoscopy is not complicated by airway colonization or infection by new potential pathogens; and 2) therapeutic rigid bronchoscopy led to clearing of airway colonization/infection in almost half of the patients studied.

Adult↗
PubMed1998

The relationship of vertical and horizontal velocity gradients in the perception of shape, rotation, and rigidity.

Perceived shape, rotation, and rigidity were investigated in displays with linear velocity gradients in the vertical and horizontal directions. Different temporal relationships between these gradients simulated perspective projections of frontally oriented or rotated translating dihedral angles, orthographic projections of rotating dihedral angles, or nonrigid motion. Displays with nonzero horizontal gradients were judged to represent greater angle magnitudes (less relative depth) than displays with 0 horizontal gradients. The temporal relationship between the vertical and horizontal gradients did not influence judged shape but did affect rotation and rigidity judgments; rigid rotations were judged to rotate most, and nonrigid displays were rated as least rigid. These results indicate that the visual system integrates information from more than 1 velocity field. Possible integration methods based on first-order optic flow analysis are discussed.

Form Perception↗
PubMed2001

Visual representation of malleable and rigid objects that deform as they rotate.

Most studies and theories of object recognition have addressed the perception of rigid objects. Yet, physical objects may also move in a nonrigid manner. A series of priming studies examined the conditions under which observers can recognize novel views of objects moving nonrigidly. Observers were primed with 2 views of a rotating object that were linked by apparent motion or presented statically. The apparent malleability of the rotating prime object varied such that the object appeared to be either malleable or rigid. Novel deformed views of malleable objects were primed when falling within the object's motion path. Priming patterns were significantly more restricted for deformed views of rigid objects. These results suggest that moving malleable objects may be represented as continuous events, whereas rigid objects may not. That is, object representations may be "dynamically remapped" during the analysis of the object's motion.

Analysis of Variance↗
PubMed1991

Relationship between rigidity-flexibility and cognitive abilities in adulthood.

The interrelationship of measures of rigidity-flexibility and of psychometric intelligence is examined. The latent factors of Attitudinal Flexibility, Motor-Cognitive Flexibility, and Psychomotor Speed are derived from the Test of Behavioral Rigidity, and factors of Inductive Reasoning, Spatial Orientation, Verbal Ability, Numeric Ability, Verbal Memory, and Perceptual Speed are derived from the Thurstone Primary Mental Abilities Test and the Educational Testing Service Kit of Factor-Referenced Tests. The data base in this study comes from the fifth wave of the Seattle Longitudinal Study (N = 1,628; age range, 22-95 years). The Rigidity-Flexibility factors were found to be independent of the cognitive domain. Also, longitudinal stability of the factor structure of the rigidity-flexibility domain was confirmed for 837 participants tested in both 1977 and 1984.

Adult↗
PubMed1987

Flexibility and rigidity, requirements for the function of proteins and protein pigment complexes. Eleventh Keilin memorial lecture.

Proteins may be rigid or flexible to various degrees as required for optimum function. Flexibility at the level of amino acid side-chains occurs universally and is important for binding and catalysis. Flexibility of large parts of a protein which rearrange or move are particularly interesting and will be discussed here. We differentiate between certain categories of large-scale flexibility although the boundaries between them are diffuse: flexibility of peptide segments, domain motions and order-disorder transitions of spatially contigous regions. The domains may be flexibly linked to allow rather unrestricted motion or the motion may be constrained to certain modes. The polypeptide segments linking the domains show characteristic structural features. The various categories of flexibility will be illustrated with the following examples. (a) Small protein proteinase inhibitors which are rather rigid molecules which provide binding surfaces complementary to their cognate proteases, but also show limited segmental flexibility and adaptation. (b) Large plasma inhibitors which exhibit large conformational changes upon interaction with proteases probably for regulatory purposes. (c) Pancreatic serine proteases which employ a disorder-order transition of their activation domain as a means to regulate enzymic activity. (d) Immunoglobulins in which rather unrestricted and also hinged domain motions occur in different parts of the molecule probably to allow binding to antigens in different arrangements. (e) Citrate synthase which adopts open and closed forms by a hinged domain motion to bind substrates and release products and to perform the catalytic condensation reaction, respectively. (f) The bifunctional multienzyme complex riboflavin synthase in which two enzymes (alpha and beta) catalyse two consecutive enzymic reactions. The beta-subunits form a shell, in which the alpha-subunits are enclosed. Diffusional motion of the catalytic intermediates is therefore restricted. In addition, segmental rearrangement occurs in the assembly of the beta-subunit. In contrast, rigidity is the dominant impression provided by the structures of the light harvesting complexes and the reaction centres involved the photosynthetic light reactions. These are large protein complexes in which the proteins serve as matrices to hold the pigments in the appropriate conformation and relative arrangement. Since motion would contribute to deactivation of the photo-excited states of the pigments and diminish the efficiency of light energy and electron transfer, a functional role for rigidity is easy to rationalize for these proteins.

Citrate (si)-Synthase↗
PubMed2001

The effects of rigid collar placement on intracranial and cerebral perfusion pressures.

Rigid collars are routinely used to immobilise the cervical spine during early management of trauma victims until spinal injury is excluded. Spinal injuries commonly coexist in patients with severe head injury, and there is still uncertainty as to whether application of a rigid collar may adversely affect intracranial pressure. The aim of this study was to examine this effect by applying rigid collars to patients with traumatic head injury. The results showed a significant rise from the baseline intracranial pressure when the collars were applied (mean rise = 4.6 mmHg, p < 0.0001). The mean rise in intracranial pressure was greater in those patients with a baseline intracranial pressure > 15 mmHg compared to those with a baseline intracranial pressure < 15 mmHg (p < 0.05). Since there was no significant change in cardiorespiratory parameters during this time, venous compression in the neck seems a likely explanation for the effect observed. These findings suggest that in head-injured patients, rigid collars should be removed as soon as cervical spine injury has been excluded or, if this is delayed, an alternative method of spinal stabilisation considered.

Adolescent↗
PubMed2002

Co-phenylcaine as an alternative to Brompton's solution in rigid nasendoscopy: a pilot study.

BACKGROUND: Rigid nasendoscopy is a diagnostic aid that is frequently used in otorhinolaryngology clinics. Topical local anaesthetic and vasoconstriction is advised prior to the procedure. Options include both Brompton's solution and co-phenylcaine. Brompton's solution contains 10% cocaine, a controlled drug that has potentially serious side-effects. Even deaths have been reported as a consequence of its use as a nasal preparatory agent. OBJECTIVE: To compare the efficacy of cocaine in the form of Brompton's solution versus co-phenylcaine as both a vasoconstrictor and a local anaesthetic in out-patient diagnostic rigid nasendoscopy. METHOD: Thirty-three patients awaiting diagnostic rigid nasendoscopy were recruited to the study. Each patient served as his own control. Co-phenylcaine was delivered as a metered dose of two sprays to one nasal passage and Brompton's solution was delivered on a cotton wool pledget placed in the other nasal passage with the aid of Tilly's forceps. An endoscopist who was unaware of which nasal passage was treated with which agent scored the vasoconstricion at endoscopy 10 min after drug application using a scoring sheet. The patients gave a numerical assessment of how painful the procedure was for each nasal passage. Mean scores were compared using Student's t-test. RESULTS: There was no difference between the two agents with regard to nasal analgesia and vasoconstriction during rigid nasal endoscopy.

Administration, Intranasal↗
PubMed2000

Neurosensory differences after wire and rigid fixation in patients with mandibular advancement.

PURPOSE: The purpose of this analysis was to compare the frequency and severity of nerve damage with rigid and wire fixation in patients participating in a prospective, randomized clinical trial. PATIENTS AND METHODS: One hundred twenty-six patients who required a bilateral sagittal split osteotomy and mandibular advancement were randomly assigned to receive either rigid or wire fixation. Tactile sensation in the mental nerve region bilaterally was determined presurgically and throughout the subsequent 2 years by using monofilament detection and brush stroke direction. Neurosensory levels were compared between the types of fixation over time. RESULTS: Evaluation with monofilament detection showed no significant difference between types of fixation throughout the 2-year follow-up. However, brush stroke determination showed significantly greater hypesthesia with rigid compared with wire fixation from 8 weeks through 2 years postoperatively. CONCLUSION: Rigid fixation resulted in more anesthesia in the mental nerve distribution than wire fixation when tested with brush stroke direction. However, increased anesthesia was not present when measured with monofilament determination.

Adolescent↗
PubMed1988

[The older primipara: labor induction and rigidity of the soft tissues].

Textbooks and literature reports frequently view the primipara of advanced age as a group being at increased risk of prolonged labor, dystocia, injuries to the birth canal and fetal distress. Particularly, a rigid cervix and reduced elasticity of the soft tissues of the birth canal are claimed responsible for these risks. Clinically, this view causes a higher frequency of operative deliveries in this group of primipara. The aim of the study was to evaluate the influence of a rigid cervix and/or reduced elasticity of the soft tissues in the birth canal on the course of labor. According to the definition of the FIGO we identified 201 primipara of advanced age as being more than 35 years old in our database. 5966 primipara (age 18-34) served as control. No significant difference was found in regard to Bishop score, progress of labor, vaginal and perineal lacerations, fetal distress and anaesthesia. However, the overall frequency of operative deliveries was increased from 27% to 58% in the primiparas of advanced age. In particular, the incidence of caesarean section increased from 11.5% to 39%. In 66% rigid tissues were called as one of the reasons for operative delivery in this group of aged primipara. However, our analysis of clinical variables does not support the notion that these women in general have an increased frequency of dystocia and/or a more rigid cervix and decreased elasticity of the birth canal. We feel that in a considerable number of patients, the concern of the obstetricians and the women in a safer and less painful delivery by caesarean section are reasons for these increased operative procedures at the end of the reproductive period.

Adult↗
PubMed2005

Rigid rod anchored to infinite membrane.

We investigate the shape deformation of an infinite membrane anchored by a rigid rod. The density profile of the rod is calculated by the self-consistent-field theory and the shape of the membrane is predicted by the Helfrich membrane elasticity theory [W. Helfrich, Z. Naturforsch. 28c, 693 (1973)]. It is found that the membrane bends away from the rigid rod when the interaction between the rod and the membrane is repulsive or weakly attractive (adsorption). However, the pulled height of the membrane at first increases and then decreases with the increase of the adsorption strength. Compared to a Gaussian chain with the same length, the rigid rod covers much larger area of the membrane, whereas exerts less local entropic pressure on the membrane. An evident gap is found between the membrane and the rigid rod because the membrane's curvature has to be continuous. These behaviors are compared with that of the flexible-polymer-anchored membranes studied by previous Monte Carlo simulations and theoretical analysis. It is straightforward to extend this method to more complicated and real biological systems, such as infinite membrane/multiple chains, protein inclusion, or systems with phase separation.

Adsorption↗
PubMed2001

Positional change of the hyoid bone after bilateral sagittal split osteotomy with rigid and wire fixation.

The purpose of this study was to compare positional changes of the hyoid bone and the amount of postsurgical compensation in mandibular position in patients who received either wire or rigid fixation after surgery. Data were analyzed from 97 patients (25 males and 72 females) who were randomized to receive wire (43) or rigid (54) fixation after mandibular advancement surgery as part of a multicenter clinical trial. Radiographs were digitized before surgery (T2), immediately after surgery (T3), and 8 weeks (T4), 6 months (T5), 1 year (T6), and 2 years (T7) after surgery. The wire group had greater sagittal relapse of the hyoid bone at T6 (P =.007), which persisted at T7 (P =.02). Both groups showed upward movement of the hyoid bone after surgery. There was no relationship between the vertical change in the the hyoid bone position and the vertical position of mandible (B point y coordinate, mandibular plane). However, there was a relationship between the horizontal hyoid bone position and B point during the postsurgical period (rigid, r = 0.450; wire, r = 0.517). The direct distance from the hyoid bone to basion increased (P <.001) in both groups at T3 and then recovered its original length after 8 weeks (P <.001). The rigid group showed no significant change in distance from the hyoid to the genial tubercles, but the wire group showed recovery of the muscle length at T6 (P <.05) and T7 (P <.05).

Bone Wires↗
PubMed1990

Ambiguous fluidity and rigidity and diamonds that ooze!

If white hemicircles rotate over the edges of a black diamond, there occurs an ambiguity of rigidity and motion. As the hemicircles obscure the vertices of the diamond, the figure transforms from a diamond to a rotating, nonrigid cross made of a tar-like fluid. When the corners reappear, the stimulus again becomes a rigid, solid diamond. Visibility of the vertices implies rigidity. If white squares are rotated, fluidity is not perceived. If the diamond has sawtooth edges and the hemicircles are rotated, no fluidity is perceived. Similarly, if illusory contours suggest the amodal completion of the vertices, rigidity is maintained.

Adult↗
PubMed2002

Protein unfolding: rigidity lost.

We relate the unfolding of a protein to its loss of structural stability or rigidity. Rigidity and flexibility are well defined concepts in mathematics and physics, with a body of theorems and algorithms that have been applied successfully to materials, allowing the constraints in a network to be related to its deformability. Here we simulate the weakening or dilution of the noncovalent bonds during protein unfolding, and identify the emergence of flexible regions as unfolding proceeds. The transition state is determined from the inflection point in the change in the number of independent bond-rotational degrees of freedom (floppy modes) of the protein as its mean atomic coordination decreases. The first derivative of the fraction of floppy modes as a function of mean coordination is similar to the fraction-folded curve for a protein as a function of denaturant concentration or temperature. The second derivative, a specific heat-like quantity, shows a peak around a mean coordination of = 2.41 for the 26 diverse proteins we have studied. As the protein denatures, it loses rigidity at the transition state, proceeds to a state where just the initial folding core remains stable, then becomes entirely denatured or flexible. This universal behavior for proteins of diverse architecture, including monomers and oligomers, is analogous to the rigid to floppy phase transition in network glasses. This approach provides a unifying view of the phase transitions of proteins and glasses, and identifies the mean coordination as the relevant structural variable, or reaction coordinate, along the unfolding pathway.

Databases, Protein↗
PubMed1997

Search for rigid sub domains in DNA from molecular dynamics simulations.

A strategy is presented for searching which atoms can be regrouped within rigid sub-units during the time course of Molecular Dynamics simulations of biopolymers. The root mean square fluctuations of the interatomic distances are used as a criterion. The number of rigid sub-units which are found depends on the tolerance rc for the definition of a rigid body, i.e. until which value the fluctuations can be neglected. The method is applied to two self-complementary oligonucleotides belonging to the B-form family which give identical results. With rc = 0.027 nm each nucleotide may be described as 3 rigid sub-units: the sugar ring, the base and the backbone (PO4 + C5' atoms). With rc = 0.01 nm, the same sub-units are obtained except that C5' can no more be regrouped with the PO4 atoms. It is shown that the variation of the coulombic potential owing to the deformation of the sub-units during the time course of the simulation is on the same order of magnitude as the inaccuracy due to the choice of the force field parameters.

Computer Simulation↗
PubMed1989

Flexural rigidity of marginal bands isolated from erythrocytes of the newt.

The marginal band is a bundle of microtubules residing at the periphery of nucleated erythrocytes of nonmammalian vertebrates and some invertebrates. Marginal bands from erythrocytes of the newt (Notopthalmus viridescens) were isolated from the cells as intact structures by treatment with detergent and either mild protease or high salt. Isolated bands were subjected to mechanical testing by stretching the band between a glass microhook and a calibrated glass fiber. The deflection of the fiber provided a measure of the force on the band. The flexural rigidity of the band was determined from measurements of the band deformation as a function of applied force. Bands isolated with either of two proteases (pepsin or elastase) or with high salt exhibited elastic behavior with a flexural rigidity of approximately 9.0 X 10(-12) dyn.cm2. Treatment of bands with chymopapain caused an increase in band rigidity and inelastic behavior. Estimates of the contribution of the band to cellular rigidity are made based on the measurements of the structural properties of the isolated band. The band provides the cell with a large resistance to indentations at the rim and to large extensions, while maintaining a high degree of flexibility in small extensions or flexure.

Animals↗
PubMed2001

Non-rigid image registration using a median-filtered coarse-to-fine displacement field and a symmetric correlation ratio.

Conventional approaches to image registration are generally limited to image-wide rigid transformations. However, the body and its internal organs are non-rigid structures that change shape due to changes in the body's posture during image acquisition, and due to normal, pathological and treatment-related variations. Inter-subject matching also constitutes a non-rigid registration problem. In this paper, we present a fully automated non-rigid image registration method that maximizes a local voxel-based similarity metric. Overlapping image blocks are defined on a 3D grid. The transformation vector field representing image deformation is found by translating each block so as to maximize the local similarity measure. The resulting sparsely sampled vector field is median filtered and interpolated by a Gaussian function to ensure a locally smooth transformation. A hierarchical strategy is adopted to progressively establish local registration associated with image structures at diminishing scale. Simulation studies were carried out to evaluate the proposed algorithm and to determine the robustness of various voxel-based cost functions. Mutual information, normalized mutual information, correlation ratio (CR) and a new symmetric version of CR were evaluated and compared. A T1-weighted magnetic resonance (MR) image was used to test intra-modality registration. Proton density and T2-weighted MR images of the same subject were used to evaluate inter-modality registration. The proposed algorithm was tested on the 2D MR images distorted by known deformations and 3D images simulating inter-subject distortions. We studied the robustness of cost functions with respect to image sampling. Results indicate that the symmetric CR gives comparable registration to mutual information in intra- and inter-modality tasks at full sampling and is superior to mutual information in registering sparsely sampled images.

Algorithms↗