The origin and early evolution of life on Earth.
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Atmosphere↗
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Climatological observations and predicted sublimation rates at Lake Hoare, Antarctica.
In December 1985, an automated meteorological station was established at Lake Hoare in the dry valley region of Antarctica. Here, we report on the first year-round observations available for any site in Taylor Valley. This dataset augments the year-round data obtained at Lake Vanda (Wright Valley) by winter-over crews during the late 1960s and early 1970s. The mean annual solar flux at Lake Hoare was 92 W m-2 during 1986, the mean air temperature -17.3 degrees C, and the mean 3-m wind speed 3.3 m s-1. The local climate is controlled by the wind regime during the 4-month sunless winter and by seasonal and diurnal variations in the incident solar flux during the remainder of the year. Temperature increases of 20 degrees-30 degrees C are frequently observed during the winter due to strong föhn winds descending from the Polar Plateau. A model incorporating nonsteady molecular diffusion into Kolmogorov-scale eddies in the interfacial layer and similarity-theory flux-profiles in the surface sublayer, is used to determine the rate of ice sublimation from the acquired meteorological data. Despite the frequent occurrence of strong winter föhns, the bulk of the annual ablation occurs during the summer due to elevated temperatures and persistent moderate winds. The annual ablation from Lake Hoare is estimated to have been 35.0 +/- 6.3 cm for 1986.
Antarctic Regions↗
Evolution of catalytic function.
An RNA-based evolution system was constructed in the laboratory and used to develop RNA enzymes with novel catalytic function. By controlling the nature of the catalytic task that the molecules must perform in order to survive, it is possible to direct the evolving population toward the expression of some desired catalytic behavior. More recently, this system has been coupled to an in vitro translation procedure, raising the possibility of evolving protein enzymes in the laboratory to produce novel proteins with desired catalytic properties. The aim of this line of research is to reduce darwinian evolution, the fundamental process of biology, to a laboratory procedure that can be made to operate in the service of organic synthesis.
Biological Evolution↗
Millimeter-scale variations of stable isotope abundances in carbonates from banded iron-formations in the Hamersley Group of Western Australia.
Several diamond drill cores from formations within the Hamersley Group of Western Australia have been studied for evidence of short-range variations in the isotopic compositions of the carbonates. For a set of 32 adjacent microbands analyzed in a specimen from the Marra Mamba Iron Formation, carbon isotope compositions of individual microbands ranged from -2.8 to -19.8 per mil compared to PDB and oxygen isotope compositions ranged from 10.2 to 20.8 per mil compared to SMOW. A pattern of alternating abundances was present, with the average isotopic contrasts between adjacent microbands being 3.0 per mil for carbon and 3.1 per mil for oxygen. Similar results were obtained for a suite of 34 microbands (in four groups) from the Bruno's Band unit of the Mount Sylvia Formation. Difficulties were experienced in preparing samples of single microbands from the Dales Gorge Member of the Brockman Iron Formation, but overall isotopic compositions were in good agreement with values reported by previous authors. Chemical analyses showed that isotopically light carbon and oxygen were correlated with increased concentrations of iron. The preservation of these millimeter-scale variations in isotopic abundances is interpreted as inconsistent with a metamorphic origin for the isotopically light carbon in the BIF carbonates. A biological origin is favored for the correlated variations in 13C and Fe, and it is suggested that the 13C-depleted carbonates may derive either from fermentative metabolism or from anaerobic respiration. A model is presented in which these processes occur near the sediment-water interface and are coupled with an initial oxidative precipitation of the iron.
Australia↗
Carbonate petrography, kerogen distribution, and carbon and oxygen isotope variations in an early Proterozoic transition from limestone to iron-formation deposition, Transvaal Supergroup, South Africa.
The transition zone comprises Campbellrand microbialaminated (replacing "cryptalgalaminate") limestone and shale, with minor dolomite, conformably overlain by the Kuruman Iron Formation of which the basal part is characterized by siderite-rich microbanded iron-formation with minor magnetite and some hematite-containing units. The iron-formation contains subordinate intraclastic and microbialaminated siderite mesobands and was deposited in deeper water than the limestones. The sequence is virtually unaltered with diagenetic mineral assemblages reflecting a temperature interval of about 110 degrees to 170 degrees C and pressures of 2 kbars. Carbonate minerals in the different rock types are represented by primary micritic precipitates (now recrystallized to microsparite), early precompactional sparry cements and concretions, deep burial limpid euhedral sparites, and spar cements precipitated from metamorphic fluids in close contact with diabase sills. Paragenetic pathways of the carbonate minerals are broadly similar in all lithofacies with kerogen intimately associated with them. Kerogen occurs as pigmentation in carbonate crystals, as reworked organic detritus in clastic-textured carbonate units, and as segregations of kerogen pigment around late diagenetic carbonate crystals. Locally kerogen may also be replaced by carbonate spar. Carbon isotope compositions of the carbonate minerals and kerogen are dependent on their mode of occurrence and on the composition of the dominant carbonate species in a specific lithofacies. Integration of sedimentary, petrographic, geochemical, and isotopic results makes it possible to distinguish between depositional, early diagenetic, deep burial, and metamorphic effects on the isotopic compositions of the carbonate minerals and the kerogen in the sequence. Major conclusions are that deep burial thermal decarboxylation led to 13C depletion in euhedral ferroan sparites and 13C enrichment in kerogen (organic carbon). Metamorphic sparites are most depleted in 13C. Carbonates in oxide-rich iron-formations are more depleted in 13C than those in siderite-rich iron-formation whereas the kerogens in oxide banded iron-formations (BIF) are more enriched. This implies that the siderite-rich iron-formations were not derived from oxide-rich iron-formation through reduction of ferric iron by organic matter. Organic matter oxidation by ferric iron did, however, decrease the abundance of kerogen in oxide-rich iron-formation and led to the formation of isotopically very light sparry carbonates. Siderite and calcmicrosparite both represent recrystallized primary micritic precipitates but differ in their 13C composition, with the siderites depleted in 13C by 4.6 per mil on average relative to calcmicrosparite. This means that the siderites were precipitated from water with dissolved inorganic carbon depleted in 13C by about 9 per mil relative to that from which the limestones precipitated. This implies an ocean system stratified with regard to total carbonate, with the deeper water, from which siderite-rich iron-formation formed, depleted in 13C. Iron-formations were deposited in areas of very low organic matter supply. Depletion of 13C may, therefore, derive not from degradation of organic matter but from hydrothermal activity, a conclusion which is supported by 18O composition of the carbonate minerals and trace element and rare earth element (REE) compositions of the iron-formations.
Calcium Carbonate↗
Revival of Dobell's "chromidia" hypothesis: chromatin bodies in the amoebomastigote Paratetramitus jugosus.
Multiple fission of a mature Paratetramitus jugosus (approx. 10 micrometers long) resulted in the production of many small, roughly spherical (2-7 micrometers in diameter) amoebae. Our observation of live material and examination of over two hundred micrographs lead us to suggest that DNA-containing membrane-bounded chromatin bodies bud amitotically from the nucleus. DAPI-stained bodies of these were observed in the cytoplasm of amoebae, mastigotes, and cysts, and at least some of these chromatin bodies seemed to be released into the medium. This interpretation revives for P. jugosus the "chromatin hypothesis" of Dobell. Our data, consistent with the descriptions of Dobell, Hogue, and Wherry, indicate that encysting amoebae may reproduce by chromidia. Dobell's original chromidia concept was limited to amoebae. Others claimed for it far-reaching consequences: "chromidia" were touted as an explanation for embryogenesis and histogenesis of metazoa. Although there is no evidence for chromidia in animals, outright rejection of Dobell's chromidia hypothesis sensu stricto as an amitotic multiple fission process in amoebae is unjustified.
Amoeba↗
Ecology and life history of an amoebomastigote, Paratetramitus jugosus, from a microbial mat: new evidence for multiple fission.
Five microbial habitats (gypsum crust, gypsum photosynthetic community, Microcoleus mat, Thiocapsa scum, and black mud) were sampled for the presence of the euryhaline, rapidly growing amoebomastigote, Paratetramitus jugosus. Field investigations of microbial mats from Baja California Norte, Mexico, and Salina Bido near Matanzas, Cuba, reveal that P. jugosus is most frequently found in the Thiocapsa layer of microbial mats. Various stages of the life history were studied using phase-contrast, differential-interference, and transmission electron microscopy. Mastigote stages were induced and studied by electron microscopy; mastigotes that actively feed on bacteria bear two or more undulipodia. A three-dimensional drawing of the kinetid ("basal apparatus") based on electron micrographs is presented. Although promitoses were occasionally observed, it is unlikely that they can account for the rapid growth of P. jugosus populations on culture media. Dense, refractile, spherical, and irregular-shaped bodies were seen at all times in all cultures along with small mononucleate (approximately 2-7 micrometers diameter) amoebae. Cytochemical studies employing two different fluorescent stains for DNA (DAPI, mithramycin) verified the presence of DNA in these small bodies. Chromatin-like material seen in electron micrographs within the cytoplasm and blebbing off nuclei were interpreted to the chromatin bodies. Our interpretation, consistent with the data but not proven, is that propagation by multiple fission of released chromatin bodies that become small amoebae may occur in Paratetramitus jugosus. These observations are consistent with descriptions of amoeba propagules in the early literature (Hogue, 1914).
Amoeba↗
The post-Paleozoic chronology and mechanism of 13C depletion in primary marine organic matter.
Carbon-isotopic compositions of geoporphyrins have been measured from marine sediments of Mesozoic and Cenozoic age in order to elucidate the timing and extent of depletion of 13C in marine primary producers. These results indicate that the difference in isotopic composition of coeval marine carbonates and marine primary photosynthate was approximately 5 to 7 permil greater during the Mesozoic and early Cenozoic than at present. In contrast to the isotopic record of marine primary producers, isotopic compositions of terrestrial organic materials have remained approximately constant for this same interval of time. This difference in the isotopic records of marine and terrestrial organic matter is considered in terms of the mechanisms controlling the isotopic fractionation associated with photosynthetic fixation of carbon. We show that the decreased isotopic fractionation between marine carbonates and organic matter from the Early to mid-Cenozoic may record variations in the abundance of atmospheric CO2.
Atmosphere↗
Modelling the Phanerozoic carbon cycle and climate: constraints from the 87Sr/86Sr isotopic ratio of seawater.
A numerical model describing the coupled evolution of the biogeochemical cycles of carbon, sulfur, calcium, magnesium, phosphorus, and strontium has been developed to describe the long-term changes of atmospheric carbon dioxide and climate during the Phanerozoic. The emphasis is on the effects of coupling the cycles of carbon and strontium. Various interpretations of the observed Phanerozoic history of the seawater 87Sr/86Sr ratio are investigated with the model. More specifically, the abilities of continental weathering, volcanism, and surface lithology in generating that signal are tested and compared. It is suggested that the observed fluctuations are mostly due to a changing weatherability over time. It is shown that such a conclusion is very important for the modelling of the carbon cycle. Indeed, it implies that the conventional belief that the evolution of atmospheric carbon dioxide and climate on a long time scale is governed by the balance between the volcanic input of CO2 and the rate of silicate weathering is not true. Rather carbon exchanges between the mantle and the exogenic system are likely to have played a key role too. Further, the increase of the global weathering rates with increasing surface temperature and/or atmospheric CO2 pressure usually postulated in long-term carbon cycle and climate modelling is also inconsistent with the new model. Other factors appear to have modulated the weatherability of the continents through time, such as mountain building and the existence of glaciers and ice sheets. Based on these observations, a history of atmospheric carbon dioxide and climate during Phanerozoic time, consistent with the strontium isotopic data, is reconstructed with the model and is shown to be compatible with paleoclimatic indicators, such as the timing of glaciation and the estimates of Cretaceous paleotemperatures.
Atmosphere↗
Sources of carbon and sulfur nutrition for consumers in three meromictic lakes of New York State.
The trophic importance of bacterioplankton as a source of carbon and sulfur nutrition for consumers in meromictic lakes was tested using stable carbon (delta 13C) and sulfur (delta 34S) isotopic measurements. Studies in three lakes near Syracuse, New York, showed that most consumers ultimately derive their C and S nutrition from a mixture of terrestrial detritus, phytoplankton, and littoral vegetation, rather than from bacterioplankton. Food webs in these meromictic lakes are thus similar to those in other lakes that lack dense populations of bacterioplankton.
Animals↗
Manganese oxidation in pH and O2 microenvironments produced by phytoplankton.
Pure cultures of Chlorella sp. catalyzed the oxidation of soluble Mn(II) to particulate, extracellular, manganic oxides. Manganese oxidation was dependent on photosynthetic activity: no oxidation was observed in the dark when cells were grown heterotrophically on glucose, or in the light when photosystem II was inhibited by the addition of DCMU. Manganates were not formed when media were buffered below pH 8.0, suggesting that an important driving force for manganese oxidation was the high pH resulting from photosynthesis. Field studies with minielectrodes in Oneida Lake, New York, demonstrated steep gradients of O2 and pH and the presence of particulate manganic oxides associated with pelagic aggregates of the cyanobacterium Microcystis sp. The manganese oxidation reaction apparently occurs only when photosynthesizing algae are present as dense populations that can generate microenvironments of high (>9.0) pH, either as aggregates in the pelagic zone or concentrated cell cultures in the laboratory. A large-scale transition from soluble to particulate manganese was measured in the surface waters of Oneida Lake throughout summer 1986. Removal of Mn(II) was correlated with the presence of aggregate-forming cyanobacteria that oxidize Mn(II) by the mechanism described above.
Chlorella↗
Diploptene: an indicator of terrigenous organic carbon in Washington coastal sediments.
The pentacyclic triterpene 17 beta(H),21 beta(H)-hop-22(29)-ene (diploptene) occurs in sediments throughout the Columbia River drainage basin and off the southern coast of Washington state in concentrations comparable to long-chain plantwax n-alkanes. The same relationship is evident for diploptene and long-chain n-alkanes in soils from the Willamette Valley. Microorganisms indigenous to soils and soil erosion are indicated as the biological source and physical process, respectively, for diploptene in coastal sediments. Similarity between the stable carbon isotopic composition (delta 13CPDB) of diploptene isolated from soil in the Willamette Valley (-31.2 +/- 0.3%) and from sediments deposited throughout the Washington coastal environment (-31.2 +/- 0.5%) supports this argument. Values of delta for diploptene in river sediments are variable and 8-17% lighter, indicating that an additional biological source such as methane-oxidizing bacteria makes a significant contribution to the diploptene record in river sediments. Selective biodegradation resulting from a difference in the physicochemical association within eroded particles can explain the absence of the more-13C-depleted form of diploptene in Washington coastal sediments, but this mechanism remains unproven.
Alkanes↗
Chemical studies on the existence of extraterrestrial life.
Although the search for extraterrestrial intelligence has not produced any direct evidence of extraterrestrial life, the emergence of life on Earth, which appears to be controlled by universal laws of physics and chemistry, must have been repeated elsewhere in the universe. The experimental approaches in our laboratory to understand the origin of life on the Earth are summarized in an attempt to obtain a better insight into the chemical basis of extraterrestrial life.
Amino Acids↗
Effects of fuel and forest conservation on future levels of atmospheric carbon dioxide.
We develop a numerical simulation of the global biogeochemical cycles of carbon that works over time scales extending from years to millions of years. The ocean is represented by warm and cold shallow water reservoirs, a thermocline reservoir, and deep Atlantic, Indian, and Pacific reservoirs. The atmosphere is characterized by a single carbon reservoir and the global biota by a single biomass reservoir. The simulation includes the rock cycle, distinguishing between shelf carbonate and pelagic carbonate precipitation, with distinct lysocline depths in the three deep ocean reservoirs. Dissolution of pelagic carbonates in response to decrease in lysocline depth is included. The simulation is tuned to reproduce the observed radiocarbon record resulting from atomic weapon testing. It is tuned also to reproduce the distribution of dissolved phosphate and total dissolved carbon between the ocean reservoirs as well as the carbon isotope ratios for both 13C and 14C in ocean and atmosphere. The simulation reproduces reasonably well the historical record of carbon dioxide partial pressure as well as the atmospheric isotope ratios for 13C and 14C over the last 200 yr as these have changed in response to fossil fuel burning and land use changes, principally forest clearance. The agreements between observation and calculation involves the assumption of a carbon dioxide fertilization effect in which the rate of production of biomass increases with increasing carbon dioxide partial pressure. At present the fertilization effect of increased carbon dioxide outweighs the effects of forest clearance, so the biota comprises an overall sink of atmospheric carbon dioxide sufficiently large to bring the budget approximately into balance. This simulation is used to examine the future evolution of carbon dioxide and its sensitivity to assumptions about the rate of fossil fuel burning and of forest clearance. Over times extending up to thousands of years, the results are insensitive to the formulation of the rock cycle and to the dissolution of deep sea carbonate sediments. Atmospheric carbon dioxide continues to increase as long fossil fuel is burned at a significant rate, because the rate of fossil fuel production of carbon dioxide far exceeds the rates at which geochemical processes can remove carbon dioxide from the atmosphere. The maximum concentration of carbon dioxide achieved in the atmosphere depends on the total amount of fossil fuel burned, but only weakly on the rate of burning. The future course of atmospheric carbon dioxide is, however, very sensitive to the fate of the forests in this simulation because of the important role assigned to carbon dioxide fertilization of plant growth rate. Forest clearance drives up atmospheric carbon dioxide not only by converting biomass into atmospheric carbon dioxide but more importantly by reducing the capacity of the biota to sequester fossil fuel carbon dioxide. In this simulation, atmospheric carbon dioxide levels could be sustained indefinitely below 500 parts per million (ppm) if fossil fuel combustion rates were immediately cut from their present value of 5 x 10(14) m/y to 0.2 x 10(14) m/y (a factor of 25 reduction) and if further forest clearance were halted. If neither of these conditions is met and if we consume most of the world's fossil fuel reserves, peak carbon dioxide concentrations of 1000-2000 ppm are probable within the next few centuries.
Atmosphere↗
Vendian microfossils in metasedimentary cherts of the Scotia Group, Prins Karls Forland, Svalbard.
Sedimentary rocks of the Scotia Group, Prins Karls Forland, Svalbard, have been metamorphosed to lower greenschist facies. Yet Scotia chert nodules contain abundant organic-walled microfossils belonging to at least seventeen taxa. Their black colour indicates that the fossils underwent substantial thermal alteration. However, it is suggested that preservation in a matrix of early diagenetic silica shielded them from the most destructive mechanical and chemical effects of metamorphism. Microbial mats and large acanthomorphic acritarchs suggest a coastal marine depositional environment; the acritarchs further indicate an early Vendian age for the sediments. The Scotia fossils bear a close resemblance to assemblages described from the Doushantuo Formation, China and elsewhere, demonstrating the broad geographical distribution of biostratigraphically important Vendian taxa. Briareus and Echinosphaeridium are described as new genera; Briareus borealis is described as a new species, while Echinosphaeridium maximum is proposed as a new combination.
Cyanobacteria↗
Crystallization of amorphous ice as the cause of comet P/Halley's outburst at 14 AU.
The post-perihelion eruption of comet P/Halley, detected in Feb. 1991 and believed to have started 3 months earlier, can be explained by crystallization of amorphous ice taking place in the interior of the porous nucleus, at depths a few tens of meters, accompanied by the release of trapped gases. Numerical calculations show that for a bulk density of 0.5 g cm-3 and a pore size of 1 millimicron crystallization occurs on the outbound leg of comet P/Halley's orbit, at heliocentric distances between 5 AU and 17 AU. The trapped gas is released and flows to the surface through the porous medium. It may also open wider channels, as the internal pressures obtained surpass the tensile strength of cometary ice. The outflowing gas carries with it grains of ice and dust, and thus can explain the large amounts of dust observed in the coma at 14.3 AU and beyond. The typical decline time of the process is found to be on the order of months, in agreement with observations. The rate of outgassing is two or three orders of magnitude higher than in quiescence. In an asymmetric, non-uniform nucleus--in contrast to the one-dimensional spherical model--the process should occur intermittently, such as was observed for comet P/Halley beyond 5 AU.
Astronomical Phenomena↗
Impacts and the origin of life.
As living creatures, all of us have some interest in the question of how life originated. To some, the question is more religious than scientific; nonetheless, a small but dedicated group of scientists spend their careers trying to answer it from a rational standpoint. Logically, the question can be broken down into the three standard divisions of any mystery: When did life originate? Where did it originate? And how did it originate? Of these three sub-questions the last is by far the most difficult and I will make no attempt to address it here. I will however take a personal look at the two easier parts of the problem. In particular, I will outline my current view of the physical environment of the early Earth, and I will try to show how observations of other solar system bodies, especially our own Moon, provide clues as to when and where life could have originated.
Atmosphere↗
Box models for the evolution of atmospheric oxygen: an update.
A simple 3-box model of the atmosphere/ocean system is used to describe the various stages in the evolution of atmospheric oxygen. In Stage I, which probably lasted until redbeds began to form about 2.0 Ga ago, the Earth's surface environment was generally devoid of free O2, except possibly in localized regions of high productivity in the surface ocean. In Stage II, which may have lasted for less than 150 Ma, the atmosphere and surface ocean were oxidizing, while the deep ocean remained anoxic. In Stage III, which commenced with the disappearance of banded iron formations around 1.85 Ga ago and has lasted until the present, all three surface reservoirs contained appreciable amounts of free O2. Recent and not-so-recent controversies regarding the abundance of oxygen in the Archean atmosphere are identified and discussed. The rate of O2 increase during the Middle and Late Proterozoic is identified as another outstanding question.
Atmosphere↗