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At least 433 records · Page 24Linked to original sources
PubMed1983

A comparison of native and covalently crosslinked creatine kinases: denaturation and reassembly.

Creatine kinase from rabbit muscle, a dimeric protein of molecular weight 81,000, was crosslinked with glutaraldehyde. The time course of the reaction was monitored by inhibition of activity, fluorescence polarization, and electrophoretic mobility in polyacrylamide slab gels containing sodium dodecyl sulfate. Inactivation is complete in 40 min. ADP (1.2 mM) decreases the rate but does not prevent complete inactivation. Fluorescence polarization analysis of N-dansylaziridyl creatine kinase suggests the formation of high molecular weight oligomers. This is confirmed through electrophoretic molecular weight analysis, which demonstrates the formation of products with molecular weight greater than 150,000 throughout the course of reaction with glutaraldehyde. During crosslinking at least three other products appear with apparent molecular weights of 150,000, 95,000, and 85,000. The 150,000 and 95,000 molecular weight products are transient, disappearing after 40 min of exposure to glutaraldehyde. Monomers of 40,000 molecular weight have also been eliminated by 40 min. The 85,000 molecular weight product, which is not present until 10 min after crosslinking, is the only product other than oligomers present at 60 min of crosslinking. These two products are separated by gel filtration. The isolated 85,000 molecular weight protein exhibits absorption and fluorescence spectra identical to those of noncrosslinked creatine kinase. Upon denaturation in 8 M urea, the noncrosslinked and crosslinked preparations undergo a 2.8-fold and 2.0-fold increase, respectively, in intrinsic protein fluorescence. Since crosslinked enzyme is incapable of dissociation upon denaturation, the difference in fluorescence (28%) between crosslinked and noncrosslinked protein in denaturant may be attributed to the contribution of dissociation to the total fluorescence change resulting from denaturation. The kinetics of reassembly of both preparations exhibit a rapid, initial decrease in fluorescence, followed by a slower, more protracted decline until the level of fluorescence of the undenatured proteins is achieved. The decrease in fluorescence during the first phase of reassembly is 93 and 72% of the total fluorescence change for crosslinked and noncrosslinked enzyme, respectively. Since, the magnitude of these changes is considerably greater than the fluorescence change attributed to association of subunits, the first kinetic phase cannot reflect dimerization, and most probably constitutes the refolding of subunits. The second, slower phase of reassembly, which is approximately 28% of the fluorescence change observed in the reassembly of noncrosslinked enzyme, but only 7% for crosslinked species, may be assigned to reassociation.

Animals↗
PubMed1984

Enzyme regulation in C4 photosynthesis: mechanism of activation of NADP-malate dehydrogenase by reduced thioredoxin.

The mechanism of activation of thioredoxin-linked NADP-malate dehydrogenase was investigated by using 14C-iodoacetate and 14C-dansylated thioredoxin m, and Sepharose affinity columns (thioredoxin m, NADP-malate dehydrogenase) as probes to monitor enzyme sulfhydryl status and enzyme-thioredoxin interaction. The data indicate that NADP-malate dehydrogenase, purified to homogeneity from corn leaves, is activated by a net transfer of reducing equivalents from thioredoxin m, reduced by dithiothreitol, to enzyme disulfide groups, thereby yielding oxidized thioredoxin m and reduced enzyme. The appearance of new sulfhydryl groups that accompanies the activation of NADP-malate dehydrogenase appears to involve a structural change that is independent of the formation of a stable complex between the enzyme and reduced thioredoxin m. The data are consistent with the conclusion that oxygen promotes deactivation of NADP-malate dehydrogenase through oxidation of SH groups on reduced thioredoxin and on the reduced (activated) enzyme.

Bacterial Proteins↗
PubMed1984

F1ATPase of Escherichia coli: a mutation (uncA401) located in the middle of the alpha subunit affects the conformation essential for F1 activity.

F1ATPase from the Escherichia coli mutant of H+-ATPase, AN120 (uncA401), has less than 1% of the wild type activity and has been shown to be defective in the alpha subunit by in vitro reconstitution experiments. In the present study, the mutation site was located within a domain of the subunit by recombinant DNA technology. For this, a series of recombinant plasmids carrying various portions of the alpha subunit gene were constructed and used for genetic recombination with AN120. Analysis of the recombinants indicated that the mutation site could be located between amino acid residues 370 and 387. The biochemical properties of the mutant F1 were analyzed further using the fluorescent ATP analog DNS-ATP (2'-(5-dimethylaminonaphthalene-1-sulfonyl)-amino-2'-deoxy ATP). The single turnover process of E. coli F1ATPase proposed by Matsuoka et al. [(1982) J. Biochem. 92, 1383-1398.] was compared in the mutant and wild type F1's. Mutant F1 bound DNS-ATP and hydrolyzed it as efficiently as wild type F1. Results showed that binding of ATP to a low affinity site, possibly in the beta subunit, caused decrease of fluorescence of DNS-ATP in the wild type F1 and that this effect of ATP binding was inhibited by DCCD (dicyclohexyl carbodiimide). However, this effect was not inhibited by DCCD in the mutant F1, suggesting that in the proposed process some step(s) after ATP binding to the low affinity site differed in the mutant and wild F1's. When Pi was added to F1 bound to DNS-ATP or to aurovertin, a fluorescent probe capable of binding to the beta subunit, the opposite changes of fluorescence of these probes in the mutant and wild type F1's were observed, suggesting that the conformational change induced by phosphate binding was altered in the mutant F1. On the basis of the estimated mutation site and the biochemical properties of the mutant F1, the correlation of the domain of this site in the alpha subunit with the function of F1 ATPase is discussed.

Adenosine Triphosphate↗
PubMed1984

Binding of simple carbohydrates and some N-acetyllactosamine-containing oligosaccharides to Erythrina cristagalli agglutinin as followed with a fluorescent indicator ligand.

Erythrina cristagalli agglutinin, a dimeric lectin [J.L. Iglesias, et al. (1982) Eur. J. Biochem. 123, 247-252] was shown by equilibrium dialysis to be bivalent for 4-methylumbelliferyl-beta-D-galactoside. Upon binding to the lectin, this ligand showed a difference absorption spectrum with two maxima (at 322 and 336 nm) of equal intensity (delta epsilon = 1.2 X 10(3) M-1 cm-1). A similar spectrum with a comparable value of delta epsilon was obtained with 4-methylumbelliferyl-N-acetyl-beta-D-galactosaminide. Binding of methyl-alpha-D-galactoside, lactose, and N-acetyllactosamine all produced small but equally intense protein difference spectra with a maximum (delta epsilon = 2.8 X 10(2) M-1 cm-1) at 291.6 nm. Upon binding of N-dansyl-D-galactosamine to the lectin, there was a fivefold increase in fluorescence intensity of this ligand. The association constant for N-dansyl-D-galactosamine was caused by a very favorable delta S degree of the dansyl group without affecting the strictly carbohydrate-specific character of binding. N-Dansyl-D-galactosamine was employed as a fluorescent indicator ligand in substitution titrations. This involved the use of simple carbohydrates, N-acetyllactosamine, and oligosaccharides which occur in the carbohydrate units of N-glycoproteins; the latter were Gal(beta 1----4)GlcNAc(beta 1----2)Man, Gal(beta 1----4)GlcNAc(beta 1----6)Man, and Gal(beta 1----4)GlcNAc(beta 1----6)[Gal(beta 1----4)GlcNAc(beta 1----2)]Man. The titrations were performed at two temperatures to determine the thermodynamic parameters. In the series N-acetyl-D-galactosamine, methyl-alpha-D-galactoside, and lactose, -delta H degrees increased from 24 to 41 kJ mol-1; it increased further for N-acetyllactosamine and then remained unchanged for the N-acetyllactosamine-containing oligosaccharides (55 +/- 1 kJ mol-1. This indicated that the site specifically accommodated the disaccharide structure with an important contribution of the 2-acetamido group in the penultimate sugar. Beyond this, no additional contacts seemed to be formed. This conclusion also followed from considerations of delta S degrees values which became more unfavorable in the above series (-23 to -101 +/- 4 J mol-1 K-1); the most negative value of delta S degrees was observed with N-acetyllactosamine and the three N-acetyllactosamine-containing oligosaccharides.

Amino Sugars↗
PubMed1984

Inhibition of activated porcine factor IX by dansyl-glutamyl-glycyl-arginyl-chloromethylketone.

Activated porcine Factor IX is irreversibly inhibited by an active site histidine-directed serine protease inhibitor, dansyl-glutamyl-glycyl-arginyl-chloromethylketone (DEGR-CK). The kinetics of inhibition are second order up to inhibitor concentrations of 10(-5) M. The apparent second-order rate constant (in 0.20 M NaCl, pH 8.0) is 1.7 X 10(4) M-1 min-1, which is considerably lower than values reported for Factor Xa, thrombin, plasmin, and kallikrein. Reaction of increasing concentrations of DEGR-CK with Factor IXa, followed by analysis of residual enzymatic activity, yields 1.2 mol DEGR-CK/mol protein, indicating 1:1 stoichiometry for the DEGR-CK/Factor IXa interaction. DEGR-Factor IXa is a potent anticoagulant in vitro. A concentration of 1 nM causes 50% inhibition of the ability of normal porcine-citrated plasma to correct either Factor VIII- or Factor IX-deficient plasmas (intrinsic pathway factors). In contrast, more than 100 nM DEGR-Factor IXa is required to cause 50% inhibition of Factor VII (extrinsic pathway) or Factor X (common pathway) assays. Activation of porcine Factor VIII:C by thrombin in the presence of DEGR-Factor IXa and phosphatidylcholine-phosphatidylserine vesicles reveals that DEGR-Factor IXa markedly stabilizes the spontaneous loss of Factor VIII:Ca activity as does unmodified Factor IXa [P. Lollar, G.J. Knutson, and D. N. Fass (1984) Blood 63, 1303-1308]. These results suggest that DEGR-Factor IXa incorporates into the intrinsic pathway Factor X-activator enzymatic complex, and also that stabilization of Factor VIII:Ca by this complex is independent of the active site of Factor IXa. Inhibition of Factor IXa by DEGR-CK results in the first reported irreversible active-site-modified derivative of this enzyme. DEGR-CK promises to be a useful reagent in the study of the Factor X activator complex. Conceivably, its specific anticoagulant properties could have future clinical benefit.

Amino Acid Chloromethyl Ketones↗
PubMed1985

Mitochondrial nicotinamide nucleotide transhydrogenase: inhibition by ethoxyformic anhydride, dansyl chloride, and pyridoxal phosphate.

Mitochondrial energy-linked nicotinamide nucleotide transhydrogenase (TH; EC 1.6.1.1) was inactivated by treatment with pyridoxal phosphate, ethoxyformic anhydride (EFA) or dansyl chloride. NADP and NADPH, but not NAD and NADH, protected TH against inhibition by pyridoxal phosphate, and L-lysine reversed this inhibition. The results suggested modification of an essential lysyl residue by pyridoxal phosphate, possibly at the NADP(H) binding site of TH. EFA and dansyl chloride inhibited TH in a similar manner. The effect of pH on the rate of inhibition of TH by EFA and dansyl chloride was the same, and in both cases addition of NADP and particularly NADPH accelerated the rate of inhibition, while addition of NAD or NADH had no effect. Double inhibition studies, using in one experiment dithiothreitol-reversible inhibition by 5,5'-dithiobis(2-nitrobenzoic acid) to protect the thiol groups of TH, and in another experiment lysine-reversible inhibition by pyridoxal phosphate to protect the putative essential lysyl residues of the enzyme, followed in each case by further treatment of the protected TH with EFA or dansyl chloride, suggested that the inhibitions by EFA and dansyl chloride were independent of the inhibitions by 5,5'-dithiobis (2-nitrobenzoic acid) and pyridoxal phosphate. The inhibitors discussed above are interesting, because pyridoxal phosphate is the only reagent known which appears to modify an essential residue in the NADP(H), but not the NAD(H), binding site of TH, and EFA and dansyl chloride are the only inhibitors known which appear to react with essential residues outside the active site of TH. It is possible that EFA and dansyl chloride inhibitions involve modification of essential prototropic residues in the proton translocation domain of the enzyme.

Animals↗
PubMed1986

The incorporation of a fluorescent probe into the active sites of one- and two-chain tissue-type plasminogen activator.

Dansyl-glutamyl-glycyl-arginyl chloromethyl ketone (DEGR-CK) was shown to inactivate both one- and two-chain human, recombinant tissue-type plasminogen activator (t-PA). The interaction of DEGR-CK with both forms of t-PA was accompanied by an identical increase in the fluorescence intensity and a blue shift in the wavelength of maximum emission, which suggests that the environment of the incorporated DEGR is similar in both one- and two-chain t-PA. The kinetics of the interaction of t-PA with DEGR-CK could be followed by both loss of activity and increase in fluorescence. The second order rate constants (k2/Ki) obtained with these two methods agreed quite well. With two-chain t-PA the values were 42 X 10(4) M-1 min-1 and 46 X 10(4) M-1 min-1 by the activity loss and fluorescence methods, respectively. With one-chain t-PA the results were 2.5 X 10(4) M-1 min-1 and 3.1 X 10(4) M-1 min-1. The rate at which one-chain t-PA is inactivated by DEGR-CK is 15 times lower than the rate with two-chain t-PA. The results demonstrated, however, that the cleavage of the one-chain protein to the two-chain form is not required for reactivity with DEGR-CK. This fluorescently labeled t-PA should be useful in probing the interactions of one- and two-chain t-PA with other proteins.

Affinity Labels↗
PubMed1985

Membrane-specific inhibitors of the bovine heart mitochondrial ATPase.

New cationic inhibitors of the bovine heart mitochondrial ATPase have been synthesized by quaternizing 1-dansylamido-3-dimethypropylamine with decyl and hexadecyl iodides. These ligands are unique in their mode of action because they inhibit the submitochondrial membrane-associated forms of the enzyme more potently than the soluble form of the enzyme (F1). Derivatives prepared with propyl or hexyl iodides are weak inhibitors and exhibit little affinity for submitochondrial membranes particle. The inhibitory effectiveness of these derivatives measured either in the direction of ATP synthesis or ATP hydrolysis results from efficient insertion into the membrane. Other inhibitory organic cations such as the 3:1 4,7-diphenyl-1,10-phenanthroline-ferrous chelate and alkyl guanidines inhibit both the membrane-associated and soluble ATPase comparably.

Adenosine Triphosphatases↗